CONSTRUCT { _:90582 up:source unirule:MF_00219 . _:90583 up:source unirule:MF_00219 . _:90584 up:source unirule:MF_00219 . _:90585 up:source unirule:MF_00219 . _:90586 up:source unirule:MF_00219 . _:90587 up:source unirule:MF_00219 . _:90588 up:source unirule:MF_00219 . _:90589 up:source unirule:MF_00219 . _:90590 up:source unirule:MF_00219 . _:90591 up:source unirule:MF_00219 . _:90592 up:source unirule:MF_00219 . _:90593 up:source unirule:MF_00219 . _:90594 up:source unirule:MF_00219 . _:90595 up:source unirule:MF_00219 . _:90596 up:source unirule:MF_00219 . _:90597 up:source unirule:MF_00219 . _:90598 up:source unirule:MF_00219 . _:90599 up:source unirule:MF_00219 . _:90600 up:source unirule:MF_00219 . _:90601 up:source unirule:MF_00219 . _:90602 up:source unirule:MF_00219 . _:90603 up:source unirule:MF_00219 . _:90604 up:source unirule:MF_00219 . _:90605 up:source unirule:MF_00219 . _:90606 up:source unirule:MF_00219 . _:90607 up:source unirule:MF_00219 . _:90608 up:source unirule:MF_00219 . _:90609 up:source unirule:MF_00219 . _:90610 up:source unirule:MF_00219 . _:90611 up:source unirule:MF_00219 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0004151 , GO:0006221 , GO:0008270 , keyword:378 , keyword:479 , keyword:665 , keyword:862 ; up:recommendedName ?name0 . ?name0 up:ecName '3.5.2.3' ; up:fullName 'Dihydroorotase' ; up:shortName 'DHOase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'pyrC' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/24296>; up:enzymeClass <http://purl.uniprot.org/enzyme/3.5.2.3>. ?annotation5 up:cofactor chebi:29105 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 Zn(2+) ions per subunit.' . ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 3/3.' . ?annotation7 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class II DHOase subfamily.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf ?molecule14 . ?molecule14 rdfs:label 'substrate' . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Active_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:29105 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:29105 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'via carbamate group' . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:29105 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'via carbamate group' . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:29105 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:29105 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:29105 . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:29105 . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; up:ligand ?ligand76 ; rdf:type up:Binding_Site_Annotation . ?pfsb74 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?ligand76 rdfs:subClassOf ?molecule77 . ?molecule77 rdfs:label 'substrate' . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; up:ligand ?ligand84 ; rdf:type up:Binding_Site_Annotation . ?pfsb82 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?ligand84 rdfs:subClassOf ?molecule85 . ?molecule85 rdfs:label 'substrate' . ?pfs88 up:annotation ?annotation89 . ?annotation89 faldo:begin ?pfsb90 ; faldo:end ?pfse91 ; up:ligand ?ligand92 ; rdf:type up:Binding_Site_Annotation . ?pfsb90 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?pfse91 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?ligand92 rdfs:subClassOf ?molecule93 . ?molecule93 rdfs:label 'substrate' . ?pfs96 up:annotation ?annotation97 . ?annotation97 faldo:begin ?pfsb98 ; faldo:end ?pfse99 ; up:ligand ?ligand100 ; rdf:type up:Binding_Site_Annotation . ?pfsb98 faldo:position ?thisPositionOn102 ; rdf:type faldo:ExactPosition . ?pfse99 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?ligand100 rdfs:subClassOf ?molecule101 . ?molecule101 rdfs:label 'substrate' . ?pfs104 up:annotation ?annotation105 . ?annotation105 faldo:begin ?pfsb106 ; faldo:end ?pfse107 ; up:ligand ?ligand108 ; rdf:type up:Binding_Site_Annotation . ?pfsb106 faldo:position ?thisPositionOn110 ; rdf:type faldo:ExactPosition . ?pfse107 faldo:position ?thisPositionOn111 ; rdf:type faldo:ExactPosition . ?ligand108 rdfs:subClassOf ?molecule109 . ?molecule109 rdfs:label 'substrate' . ?pfs112 up:annotation ?annotation113 . ?annotation113 faldo:begin ?pfsb114 ; faldo:end ?pfse115 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-carboxylysine' . ?pfsb114 faldo:position ?thisPositionOn116 ; rdf:type faldo:ExactPosition . ?pfse115 faldo:position ?thisPositionOn117 ; rdf:type faldo:ExactPosition . _:90612 a rdf:Statement ; up:attribution _:90582 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:90613 a rdf:Statement ; up:attribution _:90583 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:90614 a rdf:Statement ; up:attribution _:90584 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:90615 a rdf:Statement ; up:attribution _:90585 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:90616 a rdf:Statement ; up:attribution _:90586 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:90617 a rdf:Statement ; up:attribution _:90587 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:90618 a rdf:Statement ; up:attribution _:90588 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:90619 a rdf:Statement ; up:attribution _:90589 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:90620 a rdf:Statement ; up:attribution _:90590 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:90621 a rdf:Statement ; up:attribution _:90591 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:90622 a rdf:Statement ; up:attribution _:90592 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:665 . _:90623 a rdf:Statement ; up:attribution _:90593 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:90624 a rdf:Statement ; up:attribution _:90594 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004151 . _:90625 a rdf:Statement ; up:attribution _:90595 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:90626 a rdf:Statement ; up:attribution _:90596 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006221 . _:90627 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:90628 a rdf:Statement ; up:attribution _:90597 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:90629 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:90630 a rdf:Statement ; up:attribution _:90598 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:90631 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:90632 a rdf:Statement ; up:attribution _:90599 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:90633 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:90634 a rdf:Statement ; up:attribution _:90600 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:90635 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:90636 a rdf:Statement ; up:attribution _:90601 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:90637 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:90638 a rdf:Statement ; up:attribution _:90602 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:90639 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:90640 a rdf:Statement ; up:attribution _:90603 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:90641 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:90642 a rdf:Statement ; up:attribution _:90604 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:90643 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:90644 a rdf:Statement ; up:attribution _:90605 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:90645 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:90646 a rdf:Statement ; up:attribution _:90606 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:90647 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:90648 a rdf:Statement ; up:attribution _:90607 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:90649 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:90650 a rdf:Statement ; up:attribution _:90608 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:90651 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:90652 a rdf:Statement ; up:attribution _:90609 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:90653 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:90654 a rdf:Statement ; up:attribution _:90610 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:90655 a rdf:Statement ; up:source unirule:MF_00219 ; rdf:subject ?pfs112 ; rdf:predicate up:annotation ; rdf:object ?annotation113 . _:90656 a rdf:Statement ; up:attribution _:90611 ; rdf:subject ?pfs112 ; rdf:predicate up:annotation ; rdf:object ?annotation113 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00219 #Rule MF_00219 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00219 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00219a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00219a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00219a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00219a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00219a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00219a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00219a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP05020123 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020125 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219118 . ?templateMotifSequenceMatchRegionP05020123 faldo:begin ?templateMotifSequenceMatchBeginP05020124 . ?templateMotifSequenceMatchBeginP05020124 faldo:position ?templateMotifSequenceMatchBeginPositionP05020119 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020125 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219129 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219120 . ?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219128 . ?targetMotifMatchRegionMatchBeginMF_00219128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219121 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219129 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219118, 1, (STRLEN(?templateMotifCigarP05020MF_00219118) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219118, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP05020119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219120, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219120) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219120, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219120) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00219121) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219118, 1, (STRLEN(?templateMotifCigarP05020MF_00219118) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219118, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP05020119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219120, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219120) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219120, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219120) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00219121) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse12) . FILTER (REGEX('H[LFV]R', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) . BIND(URI(CONCAT(STR(?this), '#MF_00219a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP05020140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219135 . ?templateMotifSequenceMatchRegionP05020140 faldo:begin ?templateMotifSequenceMatchBeginP05020141 . ?templateMotifSequenceMatchBeginP05020141 faldo:position ?templateMotifSequenceMatchBeginPositionP05020136 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020142 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219145 . ?targetMotifMatchRegionMatchBeginMF_00219145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219146 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219135, 1, (STRLEN(?templateMotifCigarP05020MF_00219135) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219135, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP05020136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219137, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219137) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219137, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219137) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00219138) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t149) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP05020155 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020157 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219150 . ?templateMotifSequenceMatchRegionP05020155 faldo:begin ?templateMotifSequenceMatchBeginP05020156 . ?templateMotifSequenceMatchBeginP05020156 faldo:position ?templateMotifSequenceMatchBeginPositionP05020151 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020157 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219161 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219152 . ?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219160 . ?targetMotifMatchRegionMatchBeginMF_00219160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219153 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219161 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219150, 1, (STRLEN(?templateMotifCigarP05020MF_00219150) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219150, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP05020151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219152, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219152) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219152, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219152) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) . BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_00219153) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t164) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP05020170 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020172 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219165 . ?templateMotifSequenceMatchRegionP05020170 faldo:begin ?templateMotifSequenceMatchBeginP05020171 . ?templateMotifSequenceMatchBeginP05020171 faldo:position ?templateMotifSequenceMatchBeginPositionP05020166 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020172 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219176 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219167 . ?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219175 . ?targetMotifMatchRegionMatchBeginMF_00219175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219168 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219176 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219165, 1, (STRLEN(?templateMotifCigarP05020MF_00219165) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219165, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP05020166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219167, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219167) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219167, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219167) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) . BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_00219168) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t179) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP05020185 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020187 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219180 . ?templateMotifSequenceMatchRegionP05020185 faldo:begin ?templateMotifSequenceMatchBeginP05020186 . ?templateMotifSequenceMatchBeginP05020186 faldo:position ?templateMotifSequenceMatchBeginPositionP05020181 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020187 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219191 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219182 . ?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219190 . ?targetMotifMatchRegionMatchBeginMF_00219190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219183 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219191 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219180, 1, (STRLEN(?templateMotifCigarP05020MF_00219180) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219180, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP05020181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219182, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219182) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219182, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219182) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_00219183) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP05020200 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020202 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219195 . ?templateMotifSequenceMatchRegionP05020200 faldo:begin ?templateMotifSequenceMatchBeginP05020201 . ?templateMotifSequenceMatchBeginP05020201 faldo:position ?templateMotifSequenceMatchBeginPositionP05020196 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020202 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219206 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219197 . ?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219205 . ?targetMotifMatchRegionMatchBeginMF_00219205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219198 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219206 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219195, 1, (STRLEN(?templateMotifCigarP05020MF_00219195) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219195, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP05020196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219197, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219197) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219197, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219197) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) . BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_00219198) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t209) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP05020215 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020217 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219210 . ?templateMotifSequenceMatchRegionP05020215 faldo:begin ?templateMotifSequenceMatchBeginP05020216 . ?templateMotifSequenceMatchBeginP05020216 faldo:position ?templateMotifSequenceMatchBeginPositionP05020211 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020217 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219221 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219212 . ?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219220 . ?targetMotifMatchRegionMatchBeginMF_00219220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219213 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219221 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219210, 1, (STRLEN(?templateMotifCigarP05020MF_00219210) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219210, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP05020211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219212, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219212) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219212, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219212) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) . BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_00219213) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t224) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP05020230 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020232 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219225 . ?templateMotifSequenceMatchRegionP05020230 faldo:begin ?templateMotifSequenceMatchBeginP05020231 . ?templateMotifSequenceMatchBeginP05020231 faldo:position ?templateMotifSequenceMatchBeginPositionP05020226 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020232 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219236 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219227 . ?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219235 . ?targetMotifMatchRegionMatchBeginMF_00219235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219228 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219236 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219225, 1, (STRLEN(?templateMotifCigarP05020MF_00219225) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219225, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP05020226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219227, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219227) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219227, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219227) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) . BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_00219228) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t239) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP05020245 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020247 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219240 . ?templateMotifSequenceMatchRegionP05020245 faldo:begin ?templateMotifSequenceMatchBeginP05020246 . ?templateMotifSequenceMatchBeginP05020246 faldo:position ?templateMotifSequenceMatchBeginPositionP05020241 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020247 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219251 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219242 . ?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219250 . ?targetMotifMatchRegionMatchBeginMF_00219250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219243 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219251 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219240, 1, (STRLEN(?templateMotifCigarP05020MF_00219240) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219240, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP05020241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219242, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219242) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219242, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219242) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) . BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_00219243) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs1t254) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP05020260 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020262 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219255 . ?templateMotifSequenceMatchRegionP05020260 faldo:begin ?templateMotifSequenceMatchBeginP05020261 . ?templateMotifSequenceMatchBeginP05020261 faldo:position ?templateMotifSequenceMatchBeginPositionP05020256 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020262 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219266 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219257 . ?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219265 . ?targetMotifMatchRegionMatchBeginMF_00219265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219258 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219266 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219255, 1, (STRLEN(?templateMotifCigarP05020MF_00219255) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219255, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP05020256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219257, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219257) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219257, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219257) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) . BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_00219258) - 1) AS ?thisPositionOn78) . BIND(?thisPositionOn78 AS ?thisPositionOn79) . BIND(?this AS ?pfs1t269) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP05020275 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020277 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219270 . ?templateMotifSequenceMatchRegionP05020275 faldo:begin ?templateMotifSequenceMatchBeginP05020276 . ?templateMotifSequenceMatchBeginP05020276 faldo:position ?templateMotifSequenceMatchBeginPositionP05020271 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020277 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219281 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219272 . ?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219280 . ?targetMotifMatchRegionMatchBeginMF_00219280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219273 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219281 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219270, 1, (STRLEN(?templateMotifCigarP05020MF_00219270) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219270, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP05020271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219272, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219272) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219272, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219272) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) . BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00219273) - 1) AS ?thisPositionOn86) . BIND(?thisPositionOn86 AS ?thisPositionOn87) . BIND(?this AS ?pfs1t284) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse83) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP05020290 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020292 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219285 . ?templateMotifSequenceMatchRegionP05020290 faldo:begin ?templateMotifSequenceMatchBeginP05020291 . ?templateMotifSequenceMatchBeginP05020291 faldo:position ?templateMotifSequenceMatchBeginPositionP05020286 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020292 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219296 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219287 . ?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219295 . ?targetMotifMatchRegionMatchBeginMF_00219295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219288 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219296 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219285, 1, (STRLEN(?templateMotifCigarP05020MF_00219285) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219285, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionP05020286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219287, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219287) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219287, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219287) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) . BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_00219288) - 1) AS ?thisPositionOn94) . BIND(?thisPositionOn94 AS ?thisPositionOn95) . BIND(?this AS ?pfs1t299) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb90) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse91) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'L')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a89')) AS ?annotation89) . BIND(?this AS ?pfs88) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch304 faldo:location ?templateMotifSequenceMatchRegionP05020305 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020307 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219300 . ?templateMotifSequenceMatchRegionP05020305 faldo:begin ?templateMotifSequenceMatchBeginP05020306 . ?templateMotifSequenceMatchBeginP05020306 faldo:position ?templateMotifSequenceMatchBeginPositionP05020301 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020307 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch308 faldo:location ?targetMotifMatchRegionMatch309 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219311 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219302 . ?targetMotifMatchRegionMatch309 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219310 . ?targetMotifMatchRegionMatchBeginMF_00219310 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219303 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219311 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219300, 1, (STRLEN(?templateMotifCigarP05020MF_00219300) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219300, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionP05020301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219302, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219302) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219302, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219302) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) . BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_00219303) - 1) AS ?thisPositionOn102) . BIND(?thisPositionOn102 AS ?thisPositionOn103) . BIND(?this AS ?pfs1t314) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse99) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a97')) AS ?annotation97) . BIND(?this AS ?pfs96) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP05020320 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020322 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219315 . ?templateMotifSequenceMatchRegionP05020320 faldo:begin ?templateMotifSequenceMatchBeginP05020321 . ?templateMotifSequenceMatchBeginP05020321 faldo:position ?templateMotifSequenceMatchBeginPositionP05020316 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020322 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219326 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219317 . ?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219325 . ?targetMotifMatchRegionMatchBeginMF_00219325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219318 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219326 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219315, 1, (STRLEN(?templateMotifCigarP05020MF_00219315) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219315, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionP05020316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219317, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219317) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219317, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219317) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) . BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_00219318) - 1) AS ?thisPositionOn110) . BIND(?thisPositionOn110 AS ?thisPositionOn111) . BIND(?this AS ?pfs1t329) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse107) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'A')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a105')) AS ?annotation105) . BIND(?this AS ?pfs104) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP05020335 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020337 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05020MF_00219330 . ?templateMotifSequenceMatchRegionP05020335 faldo:begin ?templateMotifSequenceMatchBeginP05020336 . ?templateMotifSequenceMatchBeginP05020336 faldo:position ?templateMotifSequenceMatchBeginPositionP05020331 ; faldo:reference isoform:P05020-1 . ?templateMotifSequenceProfileAlignmentOperationP05020337 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . ?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219341 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05020MF_00219332 . ?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219340 . ?targetMotifMatchRegionMatchBeginMF_00219340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219333 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00219341 edam:has_input signature:MF_00219 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219330, 1, (STRLEN(?templateMotifCigarP05020MF_00219330) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219330, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP05020331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219332, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219332) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219332, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219332) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) . BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_00219333) - 1) AS ?thisPositionOn116) . BIND(?thisPositionOn116 AS ?thisPositionOn117) . BIND(?this AS ?pfs1t344) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb114) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse115) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00219a113')) AS ?annotation113) . BIND(?this AS ?pfs112) . } }