CONSTRUCT { _:99387 up:source unirule:MF_00235 . _:99388 up:source unirule:MF_00235 . _:99389 up:source unirule:MF_00235 . _:99390 up:source unirule:MF_00235 . _:99391 up:source unirule:MF_00235 . _:99392 up:source unirule:MF_00235 . _:99393 up:source unirule:MF_00235 . _:99394 up:source unirule:MF_00235 . _:99395 up:source unirule:MF_00235 . _:99396 up:source unirule:MF_00235 . _:99397 up:source unirule:MF_00235 . _:99398 up:source unirule:MF_00235 . _:99399 up:source unirule:MF_00235 . _:99400 up:source unirule:MF_00235 . _:99401 up:source unirule:MF_00235 . _:99402 up:source unirule:MF_00235 . _:99403 up:source unirule:MF_00235 . _:99404 up:source unirule:MF_00235 . _:99405 up:source unirule:MF_00235 . _:99406 up:source unirule:MF_00235 . _:99407 up:source unirule:MF_00235 . _:99408 up:source unirule:MF_00235 . _:99409 up:source unirule:MF_00235 . _:99410 up:source unirule:MF_00235 . _:99411 up:source unirule:MF_00235 . _:99412 up:source unirule:MF_00235 . _:99413 up:source unirule:MF_00235 . _:99414 up:source unirule:MF_00235 . _:99415 up:source unirule:MF_00235 . _:99416 up:source unirule:MF_00235 . _:99417 up:source unirule:MF_00235 . _:99418 up:source unirule:MF_00235 . _:99419 up:source unirule:MF_00235 . _:99420 up:source unirule:MF_00235 . _:99421 up:source unirule:MF_00235 . _:99422 up:source unirule:MF_00235 . _:99423 up:source unirule:MF_00235 . _:99424 up:source unirule:MF_00235 . _:99425 up:source unirule:MF_00235 . _:99426 up:source unirule:MF_00235 . _:99427 up:source unirule:MF_00235 . ?this up:alternativeName ?name1 , ?name2 , ?name3 ; up:annotation ?annotation5 , ?annotation6 , ?annotation8 , ?annotation9 , ?annotation10 , ?annotation12 ; up:classifiedWith GO:0004017 , GO:0005524 , GO:0005737 , GO:0044209 , keyword:418 , keyword:545 , keyword:547 , keyword:67 , keyword:808 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.4.3' ; up:fullName 'Adenylate kinase' ; up:shortName 'AK' ; rdf:type up:Structured_Name . ?name1 up:fullName 'ATP-AMP transphosphorylase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'ATP:AMP phosphotransferase' ; rdf:type up:Structured_Name . ?name3 up:fullName 'Adenylate monophosphate kinase' ; rdf:type up:Structured_Name . ?gene4 skos:prefLabel 'adk' . ?annotation5 a up:Function_Annotation ; rdfs:comment 'Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.' . ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/12973>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.4.3>. ?annotation8 a up:Pathway_Annotation ; rdfs:comment 'Purine metabolism; AMP biosynthesis via salvage pathway; AMP from ADP: step 1/1.' . ?annotation9 a up:Subunit_Annotation ; rdfs:comment 'Monomer.' . ?annotation10 a up:Subcellular_Location_Annotation . ?annotation10li11 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation12 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the adenylate kinase family.' . ?case13 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 . ?pfs15 up:annotation ?annotation16 , ?annotation22 , ?annotation28 , ?annotation34 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:29105 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:29105 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:29105 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:29105 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; rdf:type up:Region_Annotation ; rdfs:comment 'NMP' . ?pfsb42 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; rdf:type up:Region_Annotation ; rdfs:comment 'LID' . ?pfsb48 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf chebi:30616 . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; up:ligand ?ligand63 ; rdf:type up:Binding_Site_Annotation . ?pfsb61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?ligand63 rdfs:subClassOf chebi:30616 . ?pfs66 up:annotation ?annotation67 . ?annotation67 faldo:begin ?pfsb68 ; faldo:end ?pfse69 ; up:ligand ?ligand70 ; rdf:type up:Binding_Site_Annotation . ?pfsb68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfse69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?ligand70 rdfs:subClassOf chebi:456215 . ?pfs73 up:annotation ?annotation74 . ?annotation74 faldo:begin ?pfsb75 ; faldo:end ?pfse76 ; up:ligand ?ligand77 ; rdf:type up:Binding_Site_Annotation . ?pfsb75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?ligand77 rdfs:subClassOf chebi:456215 . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; up:ligand ?ligand84 ; rdf:type up:Binding_Site_Annotation . ?pfsb82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?ligand84 rdfs:subClassOf chebi:30616 . ?pfs87 up:annotation ?annotation88 . ?annotation88 faldo:begin ?pfsb89 ; faldo:end ?pfse90 ; up:ligand ?ligand91 ; rdf:type up:Binding_Site_Annotation . ?pfsb89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse90 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?ligand91 rdfs:subClassOf chebi:456215 . ?pfs94 up:annotation ?annotation95 . ?annotation95 faldo:begin ?pfsb96 ; faldo:end ?pfse97 ; up:ligand ?ligand98 ; rdf:type up:Binding_Site_Annotation . ?pfsb96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?pfse97 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?ligand98 rdfs:subClassOf chebi:456215 . ?pfs101 up:annotation ?annotation102 . ?annotation102 faldo:begin ?pfsb103 ; faldo:end ?pfse104 ; up:ligand ?ligand105 ; rdf:type up:Binding_Site_Annotation . ?pfsb103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?pfse104 faldo:position ?thisPositionOn107 ; rdf:type faldo:ExactPosition . ?ligand105 rdfs:subClassOf chebi:456215 . ?pfs108 up:annotation ?annotation109 . ?annotation109 faldo:begin ?pfsb110 ; faldo:end ?pfse111 ; up:ligand ?ligand112 ; rdf:type up:Binding_Site_Annotation . ?pfsb110 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?pfse111 faldo:position ?thisPositionOn114 ; rdf:type faldo:ExactPosition . ?ligand112 rdfs:subClassOf chebi:30616 . ?pfs115 up:annotation ?annotation116 . ?annotation116 faldo:begin ?pfsb117 ; faldo:end ?pfse118 ; up:ligand ?ligand119 ; rdf:type up:Binding_Site_Annotation . ?pfsb117 faldo:position ?thisPositionOn120 ; rdf:type faldo:ExactPosition . ?pfse118 faldo:position ?thisPositionOn121 ; rdf:type faldo:ExactPosition . ?ligand119 rdfs:subClassOf chebi:456215 . ?pfs122 up:annotation ?annotation123 . ?annotation123 faldo:begin ?pfsb124 ; faldo:end ?pfse125 ; up:ligand ?ligand126 ; rdf:type up:Binding_Site_Annotation . ?pfsb124 faldo:position ?thisPositionOn127 ; rdf:type faldo:ExactPosition . ?pfse125 faldo:position ?thisPositionOn128 ; rdf:type faldo:ExactPosition . ?ligand126 rdfs:subClassOf chebi:456215 . _:99428 a rdf:Statement ; up:attribution _:99387 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:99429 a rdf:Statement ; up:attribution _:99388 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:99430 a rdf:Statement ; up:attribution _:99389 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:99431 a rdf:Statement ; up:attribution _:99390 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:99432 a rdf:Statement ; up:attribution _:99391 ; rdf:subject ?gene4 ; rdf:predicate up:encodedBy ; rdf:object ?gene4 . _:99433 a rdf:Statement ; up:attribution _:99392 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:99434 a rdf:Statement ; up:attribution _:99393 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:99435 a rdf:Statement ; up:attribution _:99394 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:99436 a rdf:Statement ; up:attribution _:99395 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:99437 a rdf:Statement ; up:attribution _:99396 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:99438 a rdf:Statement ; up:attribution _:99397 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:99439 a rdf:Statement ; up:attribution _:99398 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:99440 a rdf:Statement ; up:attribution _:99399 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:99441 a rdf:Statement ; up:attribution _:99400 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:99442 a rdf:Statement ; up:attribution _:99401 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:418 . _:99443 a rdf:Statement ; up:attribution _:99402 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:99444 a rdf:Statement ; up:attribution _:99403 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:545 . _:99445 a rdf:Statement ; up:attribution _:99404 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004017 . _:99446 a rdf:Statement ; up:attribution _:99405 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:99447 a rdf:Statement ; up:attribution _:99406 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0044209 . _:99448 a rdf:Statement ; up:attribution _:99407 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:99449 a rdf:Statement ; up:attribution _:99408 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:99450 a rdf:Statement ; up:attribution _:99409 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:99451 a rdf:Statement ; up:attribution _:99410 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:99452 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:99453 a rdf:Statement ; up:attribution _:99411 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:99454 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:99455 a rdf:Statement ; up:attribution _:99412 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:99456 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:99457 a rdf:Statement ; up:attribution _:99413 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:99458 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:99459 a rdf:Statement ; up:attribution _:99414 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:99460 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:99461 a rdf:Statement ; up:attribution _:99415 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:99462 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:99463 a rdf:Statement ; up:attribution _:99416 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:99464 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:99465 a rdf:Statement ; up:attribution _:99417 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:99466 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:99467 a rdf:Statement ; up:attribution _:99418 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:99468 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:99469 a rdf:Statement ; up:attribution _:99419 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:99470 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:99471 a rdf:Statement ; up:attribution _:99420 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:99472 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:99473 a rdf:Statement ; up:attribution _:99421 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:99474 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:99475 a rdf:Statement ; up:attribution _:99422 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:99476 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:99477 a rdf:Statement ; up:attribution _:99423 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:99478 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:99479 a rdf:Statement ; up:attribution _:99424 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:99480 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs108 ; rdf:predicate up:annotation ; rdf:object ?annotation109 . _:99481 a rdf:Statement ; up:attribution _:99425 ; rdf:subject ?pfs108 ; rdf:predicate up:annotation ; rdf:object ?annotation109 . _:99482 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs115 ; rdf:predicate up:annotation ; rdf:object ?annotation116 . _:99483 a rdf:Statement ; up:attribution _:99426 ; rdf:subject ?pfs115 ; rdf:predicate up:annotation ; rdf:object ?annotation116 . _:99484 a rdf:Statement ; up:source unirule:MF_00235 ; rdf:subject ?pfs122 ; rdf:predicate up:annotation ; rdf:object ?annotation123 . _:99485 a rdf:Statement ; up:attribution _:99427 ; rdf:subject ?pfs122 ; rdf:predicate up:annotation ; rdf:object ?annotation123 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00235 #Rule MF_00235 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2025-08-19 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03172 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03172 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03171 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03170 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03169 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03168 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03172 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03172 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03171 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03170 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03169 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03168 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00235 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } BIND(URI(CONCAT(STR(?this), '#MF_00235a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00235a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00235a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00235a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_00235a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00235a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00235a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00235a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00235a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_00235a12')) AS ?annotation12) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP16304134 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16304136 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP16304MF_00235129 . ?templateMotifSequenceMatchRegionP16304134 faldo:begin ?templateMotifSequenceMatchBeginP16304135 . ?templateMotifSequenceMatchBeginP16304135 faldo:position ?templateMotifSequenceMatchBeginPositionP16304130 ; faldo:reference isoform:P16304-1 . ?templateMotifSequenceProfileAlignmentOperationP16304136 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235140 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP16304MF_00235131 . ?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235139 . ?targetMotifMatchRegionMatchBeginMF_00235139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235132 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235140 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16304MF_00235129, 1, (STRLEN(?templateMotifCigarP16304MF_00235129) - STRLEN(REPLACE(?templateMotifCigarP16304MF_00235129, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP16304130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00235132) - 1) AS ?thisPositionOn20) . BIND(?thisPositionOn20 AS ?thisPositionOn21) . BIND(?this AS ?pfs1t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16304MF_00235129, 1, (STRLEN(?templateMotifCigarP16304MF_00235129) - STRLEN(REPLACE(?templateMotifCigarP16304MF_00235129, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP16304130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00235132) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16304MF_00235129, 1, (STRLEN(?templateMotifCigarP16304MF_00235129) - STRLEN(REPLACE(?templateMotifCigarP16304MF_00235129, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP16304130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00235132) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs1t149) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16304MF_00235129, 1, (STRLEN(?templateMotifCigarP16304MF_00235129) - STRLEN(REPLACE(?templateMotifCigarP16304MF_00235129, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP16304130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) . BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00235132) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t152) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER (REGEX('[CD]', SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1))) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP69441158 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441160 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235153 . ?templateMotifSequenceMatchRegionP69441158 faldo:begin ?templateMotifSequenceMatchBeginP69441159 . ?templateMotifSequenceMatchBeginP69441159 faldo:position ?templateMotifSequenceMatchBeginPositionP69441154 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441160 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235164 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235155 . ?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235163 . ?targetMotifMatchRegionMatchBeginMF_00235163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235156 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235164 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235153, 1, (STRLEN(?templateMotifCigarP69441MF_00235153) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235153, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionP69441154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235155, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235155) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235155, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235155) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) . BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00235156) - 1) AS ?thisPositionOn44) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235153, 1, (STRLEN(?templateMotifCigarP69441MF_00235153) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235153, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP69441154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235155, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235155) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235155, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235155) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) . BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_00235156) - 1) AS ?thisPositionOn45) . BIND(?this AS ?pfs2t169) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) . FILTER ((BOUND(?thisPositionOn44) && BOUND(?thisPositionOn45))) . BIND(URI(CONCAT(STR(?this), '#MF_00235a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP69441175 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441177 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235170 . ?templateMotifSequenceMatchRegionP69441175 faldo:begin ?templateMotifSequenceMatchBeginP69441176 . ?templateMotifSequenceMatchBeginP69441176 faldo:position ?templateMotifSequenceMatchBeginPositionP69441171 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441177 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235181 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235172 . ?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235180 . ?targetMotifMatchRegionMatchBeginMF_00235180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235173 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235181 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235170, 1, (STRLEN(?templateMotifCigarP69441MF_00235170) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235170, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP69441171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235172, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235172) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235172, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235172) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) . BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_00235173) - 1) AS ?thisPositionOn50) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235170, 1, (STRLEN(?templateMotifCigarP69441MF_00235170) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235170, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP69441171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235172, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235172) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235172, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235172) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) . BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_00235173) - 1) AS ?thisPositionOn51) . BIND(?this AS ?pfs2t186) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) . FILTER ((BOUND(?thisPositionOn50) && BOUND(?thisPositionOn51))) . BIND(URI(CONCAT(STR(?this), '#MF_00235a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP69441192 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441194 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235187 . ?templateMotifSequenceMatchRegionP69441192 faldo:begin ?templateMotifSequenceMatchBeginP69441193 . ?templateMotifSequenceMatchBeginP69441193 faldo:position ?templateMotifSequenceMatchBeginPositionP69441188 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441194 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235198 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235189 . ?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235197 . ?targetMotifMatchRegionMatchBeginMF_00235197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235190 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235198 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235187, 1, (STRLEN(?templateMotifCigarP69441MF_00235187) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235187, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP69441188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235189, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235189) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235189, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235189) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) . BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_00235190) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs2t201) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) . FILTER (BOUND(?thisPositionOn57)) . BIND(URI(CONCAT(STR(?this), '#MF_00235a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionP69441207 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441209 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235202 . ?templateMotifSequenceMatchRegionP69441207 faldo:begin ?templateMotifSequenceMatchBeginP69441208 . ?templateMotifSequenceMatchBeginP69441208 faldo:position ?templateMotifSequenceMatchBeginPositionP69441203 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441209 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235213 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235204 . ?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235212 . ?targetMotifMatchRegionMatchBeginMF_00235212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235205 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235213 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235202, 1, (STRLEN(?templateMotifCigarP69441MF_00235202) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235202, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP69441203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235204, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235204) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235204, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235204) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) . BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00235205) - 1) AS ?thisPositionOn64) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235202, 1, (STRLEN(?templateMotifCigarP69441MF_00235202) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235202, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP69441203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235204, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235204) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235204, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235204) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) . BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_00235205) - 1) AS ?thisPositionOn65) . BIND(?this AS ?pfs2t218) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) . FILTER (REGEX('[GA][ARNDCQEGHILKMFPSTWYVBZJUOX]GK[GST][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn64, (?thisPositionOn65 - ?thisPositionOn64)))) . BIND(URI(CONCAT(STR(?this), '#MF_00235a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionP69441224 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441226 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235219 . ?templateMotifSequenceMatchRegionP69441224 faldo:begin ?templateMotifSequenceMatchBeginP69441225 . ?templateMotifSequenceMatchBeginP69441225 faldo:position ?templateMotifSequenceMatchBeginPositionP69441220 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441226 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235230 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235221 . ?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235229 . ?targetMotifMatchRegionMatchBeginMF_00235229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235222 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235230 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235219, 1, (STRLEN(?templateMotifCigarP69441MF_00235219) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235219, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP69441220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235221, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235221) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235221, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235221) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) . BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_00235222) - 1) AS ?thisPositionOn71) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235219, 1, (STRLEN(?templateMotifCigarP69441MF_00235219) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235219, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP69441220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235221, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235221) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235221, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235221) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) . BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_00235222) - 1) AS ?thisPositionOn72) . BIND(?this AS ?pfs2t235) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][LYF][VILM]', SUBSTR(?thisSequenceValue, ?thisPositionOn71, (?thisPositionOn72 - ?thisPositionOn71)))) . BIND(URI(CONCAT(STR(?this), '#MF_00235a67')) AS ?annotation67) . BIND(?this AS ?pfs66) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionP69441241 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441243 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235236 . ?templateMotifSequenceMatchRegionP69441241 faldo:begin ?templateMotifSequenceMatchBeginP69441242 . ?templateMotifSequenceMatchBeginP69441242 faldo:position ?templateMotifSequenceMatchBeginPositionP69441237 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441243 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235247 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235238 . ?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235246 . ?targetMotifMatchRegionMatchBeginMF_00235246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235239 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235247 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235236, 1, (STRLEN(?templateMotifCigarP69441MF_00235236) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235236, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP69441237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235238, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235238) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235238, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235238) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) . BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_00235239) - 1) AS ?thisPositionOn78) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235236, 1, (STRLEN(?templateMotifCigarP69441MF_00235236) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235236, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP69441237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235238, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235238) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235238, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235238) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) . BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_00235239) - 1) AS ?thisPositionOn79) . BIND(?this AS ?pfs2t252) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) . FILTER (REGEX('G[FY]PR', SUBSTR(?thisSequenceValue, ?thisPositionOn78, (?thisPositionOn79 - ?thisPositionOn78)))) . BIND(URI(CONCAT(STR(?this), '#MF_00235a74')) AS ?annotation74) . BIND(?this AS ?pfs73) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch257 faldo:location ?templateMotifSequenceMatchRegionP69441258 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441260 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235253 . ?templateMotifSequenceMatchRegionP69441258 faldo:begin ?templateMotifSequenceMatchBeginP69441259 . ?templateMotifSequenceMatchBeginP69441259 faldo:position ?templateMotifSequenceMatchBeginPositionP69441254 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441260 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch261 faldo:location ?targetMotifMatchRegionMatch262 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235264 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235255 . ?targetMotifMatchRegionMatch262 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235263 . ?targetMotifMatchRegionMatchBeginMF_00235263 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235256 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235264 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235253, 1, (STRLEN(?templateMotifCigarP69441MF_00235253) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235253, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP69441254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235255, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235255) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235255, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235255) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) . BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_00235256) - 1) AS ?thisPositionOn85) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235253, 1, (STRLEN(?templateMotifCigarP69441MF_00235253) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235253, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP69441254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235255, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235255) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235255, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235255) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) . BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_00235256) - 1) AS ?thisPositionOn86) . BIND(?this AS ?pfs2t269) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) . FILTER (REGEX('[STVI][YFH]', SUBSTR(?thisSequenceValue, ?thisPositionOn85, (?thisPositionOn86 - ?thisPositionOn85)))) . BIND(URI(CONCAT(STR(?this), '#MF_00235a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP69441275 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441277 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235270 . ?templateMotifSequenceMatchRegionP69441275 faldo:begin ?templateMotifSequenceMatchBeginP69441276 . ?templateMotifSequenceMatchBeginP69441276 faldo:position ?templateMotifSequenceMatchBeginPositionP69441271 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441277 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235281 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235272 . ?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235280 . ?targetMotifMatchRegionMatchBeginMF_00235280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235273 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235281 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235270, 1, (STRLEN(?templateMotifCigarP69441MF_00235270) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235270, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP69441271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235272, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235272) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235272, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235272) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) . BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00235273) - 1) AS ?thisPositionOn92) . BIND(?thisPositionOn92 AS ?thisPositionOn93) . BIND(?this AS ?pfs2t284) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00235a88')) AS ?annotation88) . BIND(?this AS ?pfs87) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP69441290 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441292 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235285 . ?templateMotifSequenceMatchRegionP69441290 faldo:begin ?templateMotifSequenceMatchBeginP69441291 . ?templateMotifSequenceMatchBeginP69441291 faldo:position ?templateMotifSequenceMatchBeginPositionP69441286 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441292 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235296 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235287 . ?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235295 . ?targetMotifMatchRegionMatchBeginMF_00235295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235288 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235296 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235285, 1, (STRLEN(?templateMotifCigarP69441MF_00235285) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235285, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP69441286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235287, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235287) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235287, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235287) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) . BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_00235288) - 1) AS ?thisPositionOn99) . BIND(?thisPositionOn99 AS ?thisPositionOn100) . BIND(?this AS ?pfs2t299) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00235a95')) AS ?annotation95) . BIND(?this AS ?pfs94) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch304 faldo:location ?templateMotifSequenceMatchRegionP69441305 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441307 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235300 . ?templateMotifSequenceMatchRegionP69441305 faldo:begin ?templateMotifSequenceMatchBeginP69441306 . ?templateMotifSequenceMatchBeginP69441306 faldo:position ?templateMotifSequenceMatchBeginPositionP69441301 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441307 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch308 faldo:location ?targetMotifMatchRegionMatch309 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235311 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235302 . ?targetMotifMatchRegionMatch309 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235310 . ?targetMotifMatchRegionMatchBeginMF_00235310 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235303 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235311 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235300, 1, (STRLEN(?templateMotifCigarP69441MF_00235300) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235300, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP69441301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235302, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235302) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235302, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235302) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) . BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_00235303) - 1) AS ?thisPositionOn106) . BIND(?thisPositionOn106 AS ?thisPositionOn107) . BIND(?this AS ?pfs2t314) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_00235a102')) AS ?annotation102) . BIND(?this AS ?pfs101) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP69441320 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441322 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235315 . ?templateMotifSequenceMatchRegionP69441320 faldo:begin ?templateMotifSequenceMatchBeginP69441321 . ?templateMotifSequenceMatchBeginP69441321 faldo:position ?templateMotifSequenceMatchBeginPositionP69441316 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441322 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235326 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235317 . ?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235325 . ?targetMotifMatchRegionMatchBeginMF_00235325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235318 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235326 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235315, 1, (STRLEN(?templateMotifCigarP69441MF_00235315) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235315, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionP69441316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235317, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235317) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235317, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235317) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) . BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_00235318) - 1) AS ?thisPositionOn113) . BIND(?thisPositionOn113 AS ?thisPositionOn114) . BIND(?this AS ?pfs2t329) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00235a109')) AS ?annotation109) . BIND(?this AS ?pfs108) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP69441335 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441337 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235330 . ?templateMotifSequenceMatchRegionP69441335 faldo:begin ?templateMotifSequenceMatchBeginP69441336 . ?templateMotifSequenceMatchBeginP69441336 faldo:position ?templateMotifSequenceMatchBeginPositionP69441331 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441337 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235341 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235332 . ?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235340 . ?targetMotifMatchRegionMatchBeginMF_00235340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235333 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235341 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235330, 1, (STRLEN(?templateMotifCigarP69441MF_00235330) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235330, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP69441331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235332, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235332) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235332, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235332) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) . BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_00235333) - 1) AS ?thisPositionOn120) . BIND(?thisPositionOn120 AS ?thisPositionOn121) . BIND(?this AS ?pfs2t344) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00235a116')) AS ?annotation116) . BIND(?this AS ?pfs115) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch349 faldo:location ?templateMotifSequenceMatchRegionP69441350 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441352 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69441MF_00235345 . ?templateMotifSequenceMatchRegionP69441350 faldo:begin ?templateMotifSequenceMatchBeginP69441351 . ?templateMotifSequenceMatchBeginP69441351 faldo:position ?templateMotifSequenceMatchBeginPositionP69441346 ; faldo:reference isoform:P69441-1 . ?templateMotifSequenceProfileAlignmentOperationP69441352 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . ?targetMotifMatch353 faldo:location ?targetMotifMatchRegionMatch354 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235356 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69441MF_00235347 . ?targetMotifMatchRegionMatch354 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235355 . ?targetMotifMatchRegionMatchBeginMF_00235355 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235348 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00235356 edam:has_input signature:MF_00235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235345, 1, (STRLEN(?templateMotifCigarP69441MF_00235345) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235345, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionP69441346) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1357) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235347, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235347) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1357), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235347, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235347) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1357), '}'), '')))), '[^-]', ''))) AS ?step2358) . BIND(((?step2358 + ?targetMotifMatchRegionMatchBeginPositionMF_00235348) - 1) AS ?thisPositionOn127) . BIND(?thisPositionOn127 AS ?thisPositionOn128) . BIND(?this AS ?pfs2t359) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00235a123')) AS ?annotation123) . BIND(?this AS ?pfs122) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag360) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag360, ?UNBOUND_VARIABLE) AS ?case13) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag361) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag361, ?UNBOUND_VARIABLE) AS ?case14) . }