CONSTRUCT { _:193124 up:source unirule:MF_00488 . _:193125 up:source unirule:MF_00488 . _:193126 up:source unirule:MF_00488 . _:193127 up:source unirule:MF_00488 . _:193128 up:source unirule:MF_00488 . _:193129 up:source unirule:MF_00488 . _:193130 up:source unirule:MF_00488 . _:193131 up:source unirule:MF_00488 . _:193132 up:source unirule:MF_00488 . _:193133 up:source unirule:MF_00488 . _:193134 up:source unirule:MF_00488 . _:193135 up:source unirule:MF_00488 . _:193136 up:source unirule:MF_00488 . _:193137 up:source unirule:MF_00488 . _:193138 up:source unirule:MF_00488 . _:193139 up:source unirule:MF_00488 . _:193140 up:source unirule:MF_00488 . _:193141 up:source unirule:MF_00488 . _:193142 up:source unirule:MF_00488 . _:193143 up:source unirule:MF_00488 . _:193144 up:source unirule:MF_00488 . _:193145 up:source unirule:MF_00488 . _:193146 up:source unirule:MF_00488 . _:193147 up:source unirule:MF_00488 . _:193148 up:source unirule:MF_00488 . _:193149 up:source unirule:MF_00488 . _:193150 up:source unirule:MF_00488 . _:193151 up:source unirule:MF_00488 . _:193152 up:source unirule:MF_00488 . _:193153 up:source unirule:MF_00488 . _:193154 up:source unirule:MF_00488 . _:193155 up:source unirule:MF_00488 . _:193156 up:source unirule:MF_00488 . _:193157 up:source unirule:MF_00488 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 , ?annotation9 ; up:classifiedWith GO:0004459 , GO:0005737 , GO:0006096 , keyword:520 , keyword:560 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '1.1.1.27' ; up:fullName 'L-lactate dehydrogenase' ; up:shortName 'L-LDH' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'ldh' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the conversion of lactate to pyruvate.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/23444>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.1.1.27>. ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Fermentation; pyruvate fermentation to lactate; (S)-lactate from pyruvate: step 1/1.' . ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Homotetramer.' . ?annotation7 a up:Subcellular_Location_Annotation . ?annotation7li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation9 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the LDH/MDH superfamily. LDH family.' . ?case10 up:classifiedWith keyword:21 . ?case11 up:classifiedWith keyword:597 . ?case12 up:classifiedWith keyword:346 . ?pfs13 up:annotation ?annotation14 , ?annotation20 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:32966 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:32966 . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphotyrosine' . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:57540 . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf chebi:57540 . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf ?molecule51 . ?molecule51 rdfs:label 'substrate' . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf ?molecule59 . ?molecule59 rdfs:label 'substrate' . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb64 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:57540 . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf chebi:57540 . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; up:ligand ?ligand86 ; rdf:type up:Binding_Site_Annotation . ?pfsb84 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?ligand86 rdfs:subClassOf chebi:57540 . ?pfs89 up:annotation ?annotation90 . ?annotation90 faldo:begin ?pfsb91 ; faldo:end ?pfse92 ; up:ligand ?ligand93 ; rdf:type up:Binding_Site_Annotation . ?pfsb91 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?pfse92 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?ligand93 rdfs:subClassOf chebi:57540 . ?pfs96 up:annotation ?annotation97 . ?annotation97 faldo:begin ?pfsb98 ; faldo:end ?pfse99 ; up:ligand ?ligand100 ; rdf:type up:Binding_Site_Annotation . ?pfsb98 faldo:position ?thisPositionOn102 ; rdf:type faldo:ExactPosition . ?pfse99 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?ligand100 rdfs:subClassOf ?molecule101 . ?molecule101 rdfs:label 'substrate' . ?pfs104 up:annotation ?annotation105 . ?annotation105 faldo:begin ?pfsb106 ; faldo:end ?pfse107 ; up:ligand ?ligand108 ; rdf:type up:Binding_Site_Annotation . ?pfsb106 faldo:position ?thisPositionOn110 ; rdf:type faldo:ExactPosition . ?pfse107 faldo:position ?thisPositionOn111 ; rdf:type faldo:ExactPosition . ?ligand108 rdfs:subClassOf ?molecule109 . ?molecule109 rdfs:label 'substrate' . ?pfs112 up:annotation ?annotation113 . ?annotation113 faldo:begin ?pfsb114 ; faldo:end ?pfse115 ; up:ligand ?ligand116 ; rdf:type up:Binding_Site_Annotation . ?pfsb114 faldo:position ?thisPositionOn117 ; rdf:type faldo:ExactPosition . ?pfse115 faldo:position ?thisPositionOn118 ; rdf:type faldo:ExactPosition . ?ligand116 rdfs:subClassOf chebi:57540 . ?pfs119 up:annotation ?annotation120 . ?annotation120 faldo:begin ?pfsb121 ; faldo:end ?pfse122 ; up:ligand ?ligand123 ; rdf:type up:Binding_Site_Annotation . ?pfsb121 faldo:position ?thisPositionOn124 ; rdf:type faldo:ExactPosition . ?pfse122 faldo:position ?thisPositionOn125 ; rdf:type faldo:ExactPosition . ?ligand123 rdfs:subClassOf chebi:57540 . ?pfs126 up:annotation ?annotation127 . ?annotation127 faldo:begin ?pfsb128 ; faldo:end ?pfse129 ; up:ligand ?ligand130 ; rdf:type up:Binding_Site_Annotation . ?pfsb128 faldo:position ?thisPositionOn132 ; rdf:type faldo:ExactPosition . ?pfse129 faldo:position ?thisPositionOn133 ; rdf:type faldo:ExactPosition . ?ligand130 rdfs:subClassOf ?molecule131 . ?molecule131 rdfs:label 'substrate' . _:193158 a rdf:Statement ; up:attribution _:193124 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:193159 a rdf:Statement ; up:attribution _:193125 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:193160 a rdf:Statement ; up:attribution _:193126 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:193161 a rdf:Statement ; up:attribution _:193127 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:193162 a rdf:Statement ; up:attribution _:193128 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:193163 a rdf:Statement ; up:attribution _:193129 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:193164 a rdf:Statement ; up:attribution _:193130 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:193165 a rdf:Statement ; up:attribution _:193131 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:193166 a rdf:Statement ; up:attribution _:193132 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:193167 a rdf:Statement ; up:attribution _:193133 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:193168 a rdf:Statement ; up:attribution _:193134 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:193169 a rdf:Statement ; up:attribution _:193135 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004459 . _:193170 a rdf:Statement ; up:attribution _:193136 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006096 . _:193171 a rdf:Statement ; up:attribution _:193137 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:193172 a rdf:Statement ; up:attribution _:193138 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:21 . _:193173 a rdf:Statement ; up:attribution _:193139 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:193174 a rdf:Statement ; up:attribution _:193140 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object keyword:346 . _:193175 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:193176 a rdf:Statement ; up:attribution _:193141 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:193177 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:193178 a rdf:Statement ; up:attribution _:193142 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:193179 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:193180 a rdf:Statement ; up:attribution _:193143 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:193181 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:193182 a rdf:Statement ; up:attribution _:193144 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:193183 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:193184 a rdf:Statement ; up:attribution _:193145 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:193185 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:193186 a rdf:Statement ; up:attribution _:193146 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:193187 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:193188 a rdf:Statement ; up:attribution _:193147 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:193189 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:193190 a rdf:Statement ; up:attribution _:193148 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:193191 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:193192 a rdf:Statement ; up:attribution _:193149 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:193193 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:193194 a rdf:Statement ; up:attribution _:193150 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:193195 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:193196 a rdf:Statement ; up:attribution _:193151 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:193197 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs89 ; rdf:predicate up:annotation ; rdf:object ?annotation90 . _:193198 a rdf:Statement ; up:attribution _:193152 ; rdf:subject ?pfs89 ; rdf:predicate up:annotation ; rdf:object ?annotation90 . _:193199 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:193200 a rdf:Statement ; up:attribution _:193153 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:193201 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:193202 a rdf:Statement ; up:attribution _:193154 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:193203 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs112 ; rdf:predicate up:annotation ; rdf:object ?annotation113 . _:193204 a rdf:Statement ; up:attribution _:193155 ; rdf:subject ?pfs112 ; rdf:predicate up:annotation ; rdf:object ?annotation113 . _:193205 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs119 ; rdf:predicate up:annotation ; rdf:object ?annotation120 . _:193206 a rdf:Statement ; up:attribution _:193156 ; rdf:subject ?pfs119 ; rdf:predicate up:annotation ; rdf:object ?annotation120 . _:193207 a rdf:Statement ; up:source unirule:MF_00488 ; rdf:subject ?pfs126 ; rdf:predicate up:annotation ; rdf:object ?annotation127 . _:193208 a rdf:Statement ; up:attribution _:193157 ; rdf:subject ?pfs126 ; rdf:predicate up:annotation ; rdf:object ?annotation127 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00488 #Rule MF_00488 Created by:bairoch on:2001-11-23 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00488 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00488a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00488a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00488a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00488a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00488a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00488a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00488a9')) AS ?annotation9) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP00344139 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344141 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488134 . ?templateMotifSequenceMatchRegionP00344139 faldo:begin ?templateMotifSequenceMatchBeginP00344140 . ?templateMotifSequenceMatchBeginP00344140 faldo:position ?templateMotifSequenceMatchBeginPositionP00344135 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344141 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488145 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488136 . ?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488144 . ?targetMotifMatchRegionMatchBeginMF_00488144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488137 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488145 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488134, 1, (STRLEN(?templateMotifCigarP00344MF_00488134) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488134, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP00344135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488136, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488136) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488136, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488136) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) . BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_00488137) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488134, 1, (STRLEN(?templateMotifCigarP00344MF_00488134) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488134, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionP00344135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488136, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488136) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488136, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488136) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00488137) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP13714157 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13714159 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP13714MF_00488152 . ?templateMotifSequenceMatchRegionP13714157 faldo:begin ?templateMotifSequenceMatchBeginP13714158 . ?templateMotifSequenceMatchBeginP13714158 faldo:position ?templateMotifSequenceMatchBeginPositionP13714153 ; faldo:reference isoform:P13714-1 . ?templateMotifSequenceProfileAlignmentOperationP13714159 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488163 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP13714MF_00488154 . ?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488162 . ?targetMotifMatchRegionMatchBeginMF_00488162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488155 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488163 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagPhosphotyrosine) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13714MF_00488152, 1, (STRLEN(?templateMotifCigarP13714MF_00488152) - STRLEN(REPLACE(?templateMotifCigarP13714MF_00488152, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionP13714153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13714MF_00488154, 1, (STRLEN(?targetMotifMatchCigarP13714MF_00488154) - STRLEN(REPLACE(?targetMotifMatchCigarP13714MF_00488154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13714MF_00488154, 1, (STRLEN(?targetMotifMatchCigarP13714MF_00488154) - STRLEN(REPLACE(?targetMotifMatchCigarP13714MF_00488154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) . BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00488155) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs2t166) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_00488a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP00344172 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344174 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488167 . ?templateMotifSequenceMatchRegionP00344172 faldo:begin ?templateMotifSequenceMatchBeginP00344173 . ?templateMotifSequenceMatchBeginP00344173 faldo:position ?templateMotifSequenceMatchBeginPositionP00344168 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344174 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488178 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488169 . ?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488177 . ?targetMotifMatchRegionMatchBeginMF_00488177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488170 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488178 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488167, 1, (STRLEN(?templateMotifCigarP00344MF_00488167) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488167, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP00344168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488169, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488169) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488169, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488169) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) . BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_00488170) - 1) AS ?thisPositionOn37) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488167, 1, (STRLEN(?templateMotifCigarP00344MF_00488167) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488167, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP00344168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488169, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488169) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488169, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488169) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) . BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00488170) - 1) AS ?thisPositionOn38) . BIND(?this AS ?pfs3t183) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER (REGEX('G[AVL]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) . BIND(URI(CONCAT(STR(?this), '#MF_00488a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP00344189 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344191 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488184 . ?templateMotifSequenceMatchRegionP00344189 faldo:begin ?templateMotifSequenceMatchBeginP00344190 . ?templateMotifSequenceMatchBeginP00344190 faldo:position ?templateMotifSequenceMatchBeginPositionP00344185 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344191 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488195 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488186 . ?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488194 . ?targetMotifMatchRegionMatchBeginMF_00488194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488187 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488195 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488184, 1, (STRLEN(?templateMotifCigarP00344MF_00488184) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488184, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP00344185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488186, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488186) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488186, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488186) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) . BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_00488187) - 1) AS ?thisPositionOn44) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488184, 1, (STRLEN(?templateMotifCigarP00344MF_00488184) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488184, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP00344185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488186, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488186) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488186, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488186) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) . BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_00488187) - 1) AS ?thisPositionOn45) . BIND(?this AS ?pfs3t200) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) . FILTER (REGEX('[AIV][ARNDCQEGHILKMFPSTWYVBZJUOX]N', SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)))) . BIND(URI(CONCAT(STR(?this), '#MF_00488a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionP00344206 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344208 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488201 . ?templateMotifSequenceMatchRegionP00344206 faldo:begin ?templateMotifSequenceMatchBeginP00344207 . ?templateMotifSequenceMatchBeginP00344207 faldo:position ?templateMotifSequenceMatchBeginPositionP00344202 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344208 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488212 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488203 . ?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488211 . ?targetMotifMatchRegionMatchBeginMF_00488211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488204 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488212 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488201, 1, (STRLEN(?templateMotifCigarP00344MF_00488201) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488201, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP00344202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488203, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488203) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488203, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488203) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) . BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_00488204) - 1) AS ?thisPositionOn52) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488201, 1, (STRLEN(?templateMotifCigarP00344MF_00488201) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488201, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP00344202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488203, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488203) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488203, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488203) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) . BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00488204) - 1) AS ?thisPositionOn53) . BIND(?this AS ?pfs3t217) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) . FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn52, (?thisPositionOn53 - ?thisPositionOn52)))) . BIND(URI(CONCAT(STR(?this), '#MF_00488a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionP00344223 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344225 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488218 . ?templateMotifSequenceMatchRegionP00344223 faldo:begin ?templateMotifSequenceMatchBeginP00344224 . ?templateMotifSequenceMatchBeginP00344224 faldo:position ?templateMotifSequenceMatchBeginPositionP00344219 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344225 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488229 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488220 . ?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488228 . ?targetMotifMatchRegionMatchBeginMF_00488228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488221 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488229 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488218, 1, (STRLEN(?templateMotifCigarP00344MF_00488218) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488218, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP00344219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488220, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488220) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488220, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488220) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) . BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_00488221) - 1) AS ?thisPositionOn60) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488218, 1, (STRLEN(?templateMotifCigarP00344MF_00488218) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488218, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP00344219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488220, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488220) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488220, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488220) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) . BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_00488221) - 1) AS ?thisPositionOn61) . BIND(?this AS ?pfs3t234) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) . FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)))) . BIND(URI(CONCAT(STR(?this), '#MF_00488a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP00344240 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344242 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488235 . ?templateMotifSequenceMatchRegionP00344240 faldo:begin ?templateMotifSequenceMatchBeginP00344241 . ?templateMotifSequenceMatchBeginP00344241 faldo:position ?templateMotifSequenceMatchBeginPositionP00344236 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344242 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488246 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488237 . ?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488245 . ?targetMotifMatchRegionMatchBeginMF_00488245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488238 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488246 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488235, 1, (STRLEN(?templateMotifCigarP00344MF_00488235) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488235, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP00344236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488237, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488237) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488237, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488237) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) . BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_00488238) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs3t249) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00488a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP00344255 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344257 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488250 . ?templateMotifSequenceMatchRegionP00344255 faldo:begin ?templateMotifSequenceMatchBeginP00344256 . ?templateMotifSequenceMatchBeginP00344256 faldo:position ?templateMotifSequenceMatchBeginPositionP00344251 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344257 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488261 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488252 . ?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488260 . ?targetMotifMatchRegionMatchBeginMF_00488260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488253 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488261 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488250, 1, (STRLEN(?templateMotifCigarP00344MF_00488250) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488250, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP00344251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488252, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488252) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488252, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488252) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) . BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_00488253) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs3t264) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'V')) . BIND(URI(CONCAT(STR(?this), '#MF_00488a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP00344270 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344272 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488265 . ?templateMotifSequenceMatchRegionP00344270 faldo:begin ?templateMotifSequenceMatchBeginP00344271 . ?templateMotifSequenceMatchBeginP00344271 faldo:position ?templateMotifSequenceMatchBeginPositionP00344266 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344272 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488276 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488267 . ?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488275 . ?targetMotifMatchRegionMatchBeginMF_00488275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488268 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488276 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488265, 1, (STRLEN(?templateMotifCigarP00344MF_00488265) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488265, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP00344266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488267, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488267) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488267, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488267) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) . BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_00488268) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs3t279) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) . FILTER (REGEX('[DNE]', SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00488a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP00344285 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344287 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488280 . ?templateMotifSequenceMatchRegionP00344285 faldo:begin ?templateMotifSequenceMatchBeginP00344286 . ?templateMotifSequenceMatchBeginP00344286 faldo:position ?templateMotifSequenceMatchBeginPositionP00344281 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344287 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488291 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488282 . ?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488290 . ?targetMotifMatchRegionMatchBeginMF_00488290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488283 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488291 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488280, 1, (STRLEN(?templateMotifCigarP00344MF_00488280) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488280, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP00344281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488282, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488282) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488282, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488282) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) . BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_00488283) - 1) AS ?thisPositionOn87) . BIND(?thisPositionOn87 AS ?thisPositionOn88) . BIND(?this AS ?pfs3t294) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00488a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionP00344300 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344302 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488295 . ?templateMotifSequenceMatchRegionP00344300 faldo:begin ?templateMotifSequenceMatchBeginP00344301 . ?templateMotifSequenceMatchBeginP00344301 faldo:position ?templateMotifSequenceMatchBeginPositionP00344296 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344302 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488306 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488297 . ?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488305 . ?targetMotifMatchRegionMatchBeginMF_00488305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488298 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488306 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488295, 1, (STRLEN(?templateMotifCigarP00344MF_00488295) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488295, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP00344296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488297, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488297) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488297, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488297) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) . BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_00488298) - 1) AS ?thisPositionOn94) . BIND(?thisPositionOn94 AS ?thisPositionOn95) . BIND(?this AS ?pfs3t309) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_00488a90')) AS ?annotation90) . BIND(?this AS ?pfs89) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionP00344315 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344317 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488310 . ?templateMotifSequenceMatchRegionP00344315 faldo:begin ?templateMotifSequenceMatchBeginP00344316 . ?templateMotifSequenceMatchBeginP00344316 faldo:position ?templateMotifSequenceMatchBeginPositionP00344311 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344317 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488321 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488312 . ?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488320 . ?targetMotifMatchRegionMatchBeginMF_00488320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488313 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488321 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488310, 1, (STRLEN(?templateMotifCigarP00344MF_00488310) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488310, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP00344311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488312, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488312) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488312, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488312) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) . BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_00488313) - 1) AS ?thisPositionOn102) . BIND(?thisPositionOn102 AS ?thisPositionOn103) . BIND(?this AS ?pfs3t324) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse99) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_00488a97')) AS ?annotation97) . BIND(?this AS ?pfs96) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch329 faldo:location ?templateMotifSequenceMatchRegionP00344330 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344332 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488325 . ?templateMotifSequenceMatchRegionP00344330 faldo:begin ?templateMotifSequenceMatchBeginP00344331 . ?templateMotifSequenceMatchBeginP00344331 faldo:position ?templateMotifSequenceMatchBeginPositionP00344326 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344332 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch333 faldo:location ?targetMotifMatchRegionMatch334 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488336 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488327 . ?targetMotifMatchRegionMatch334 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488335 . ?targetMotifMatchRegionMatchBeginMF_00488335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488328 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488336 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488325, 1, (STRLEN(?templateMotifCigarP00344MF_00488325) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488325, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP00344326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1337) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488327, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488327) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488327, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488327) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), '')))), '[^-]', ''))) AS ?step2338) . BIND(((?step2338 + ?targetMotifMatchRegionMatchBeginPositionMF_00488328) - 1) AS ?thisPositionOn110) . BIND(?thisPositionOn110 AS ?thisPositionOn111) . BIND(?this AS ?pfs3t339) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse107) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00488a105')) AS ?annotation105) . BIND(?this AS ?pfs104) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch344 faldo:location ?templateMotifSequenceMatchRegionP00344345 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344347 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488340 . ?templateMotifSequenceMatchRegionP00344345 faldo:begin ?templateMotifSequenceMatchBeginP00344346 . ?templateMotifSequenceMatchBeginP00344346 faldo:position ?templateMotifSequenceMatchBeginPositionP00344341 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344347 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch348 faldo:location ?targetMotifMatchRegionMatch349 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488351 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488342 . ?targetMotifMatchRegionMatch349 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488350 . ?targetMotifMatchRegionMatchBeginMF_00488350 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488343 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488351 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488340, 1, (STRLEN(?templateMotifCigarP00344MF_00488340) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488340, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP00344341) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1352) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488342, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488342) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488342, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488342) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), '')))), '[^-]', ''))) AS ?step2353) . BIND(((?step2353 + ?targetMotifMatchRegionMatchBeginPositionMF_00488343) - 1) AS ?thisPositionOn117) . BIND(?thisPositionOn117 AS ?thisPositionOn118) . BIND(?this AS ?pfs3t354) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb114) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse115) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00488a113')) AS ?annotation113) . BIND(?this AS ?pfs112) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch359 faldo:location ?templateMotifSequenceMatchRegionP00344360 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344362 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488355 . ?templateMotifSequenceMatchRegionP00344360 faldo:begin ?templateMotifSequenceMatchBeginP00344361 . ?templateMotifSequenceMatchBeginP00344361 faldo:position ?templateMotifSequenceMatchBeginPositionP00344356 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344362 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch363 faldo:location ?targetMotifMatchRegionMatch364 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488366 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488357 . ?targetMotifMatchRegionMatch364 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488365 . ?targetMotifMatchRegionMatchBeginMF_00488365 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488358 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488366 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488355, 1, (STRLEN(?templateMotifCigarP00344MF_00488355) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488355, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP00344356) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1367) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488357, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488357) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488357, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488357) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), '')))), '[^-]', ''))) AS ?step2368) . BIND(((?step2368 + ?targetMotifMatchRegionMatchBeginPositionMF_00488358) - 1) AS ?thisPositionOn124) . BIND(?thisPositionOn124 AS ?thisPositionOn125) . BIND(?this AS ?pfs3t369) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse122) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn124, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00488a120')) AS ?annotation120) . BIND(?this AS ?pfs119) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch374 faldo:location ?templateMotifSequenceMatchRegionP00344375 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344377 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00344MF_00488370 . ?templateMotifSequenceMatchRegionP00344375 faldo:begin ?templateMotifSequenceMatchBeginP00344376 . ?templateMotifSequenceMatchBeginP00344376 faldo:position ?templateMotifSequenceMatchBeginPositionP00344371 ; faldo:reference isoform:P00344-1 . ?templateMotifSequenceProfileAlignmentOperationP00344377 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . ?targetMotifMatch378 faldo:location ?targetMotifMatchRegionMatch379 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488381 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00344MF_00488372 . ?targetMotifMatchRegionMatch379 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488380 . ?targetMotifMatchRegionMatchBeginMF_00488380 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488373 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00488381 edam:has_input signature:MF_00488 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488370, 1, (STRLEN(?templateMotifCigarP00344MF_00488370) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488370, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP00344371) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1382) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488372, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488372) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1382), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488372, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488372) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1382), '}'), '')))), '[^-]', ''))) AS ?step2383) . BIND(((?step2383 + ?targetMotifMatchRegionMatchBeginPositionMF_00488373) - 1) AS ?thisPositionOn132) . BIND(?thisPositionOn132 AS ?thisPositionOn133) . BIND(?this AS ?pfs3t384) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfsb128) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfse129) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn132, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_00488a127')) AS ?annotation127) . BIND(?this AS ?pfs126) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag385) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag385, ?UNBOUND_VARIABLE) AS ?case10) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag386) . } BIND(IF(BOUND(?tagPhosphotyrosine), ?caseWithTag386, ?UNBOUND_VARIABLE) AS ?case11) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism up:scientificName ?name387 . FILTER (CONTAINS(?containsName388, ?name387)) . BIND(?this AS ?case12) . } }