@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:213749 up:source unirule:MF_00549 . _:213750 up:source unirule:MF_00549 . _:213751 up:source unirule:MF_00549 . _:213752 up:source unirule:MF_00549 . _:213753 up:source unirule:MF_00549 . _:213754 up:source unirule:MF_00549 . _:213755 up:source unirule:MF_00549 . _:213756 up:source unirule:MF_00549 . _:213757 up:source unirule:MF_00549 . _:213758 up:source unirule:MF_00549 . _:213759 up:source unirule:MF_00549 . _:213760 up:source unirule:MF_00549 . _:213761 up:source unirule:MF_00549 . _:213762 up:source unirule:MF_00549 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 ; up:classifiedWith GO:0008929 , GO:0019242 , keyword:456 ; up:recommendedName ?name0 . ?name0 up:ecName '4.2.3.3' ; up:fullName 'Methylglyoxal synthase' ; up:shortName 'MGS' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'mgsA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity ; up:enzymeClass . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the methylglyoxal synthase family.' . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; up:ligand ?ligand10 ; rdf:type up:Binding_Site_Annotation . ?pfsb8 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?ligand10 rdfs:subClassOf ?molecule11 . ?molecule11 rdfs:label 'substrate' . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf ?molecule19 . ?molecule19 rdfs:label 'substrate' . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor/acceptor' . ?pfsb24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf ?molecule33 . ?molecule33 rdfs:label 'substrate' . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf ?molecule41 . ?molecule41 rdfs:label 'substrate' . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf ?molecule49 . ?molecule49 rdfs:label 'substrate' . _:213763 a rdf:Statement ; up:attribution _:213749 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:213764 a rdf:Statement ; up:attribution _:213750 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:213765 a rdf:Statement ; up:attribution _:213751 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:213766 a rdf:Statement ; up:attribution _:213752 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:213767 a rdf:Statement ; up:attribution _:213753 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:213768 a rdf:Statement ; up:attribution _:213754 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:213769 a rdf:Statement ; up:attribution _:213755 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008929 . _:213770 a rdf:Statement ; up:attribution _:213756 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019242 . _:213771 a rdf:Statement ; up:source unirule:MF_00549 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:213772 a rdf:Statement ; up:attribution _:213757 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:213773 a rdf:Statement ; up:source unirule:MF_00549 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:213774 a rdf:Statement ; up:attribution _:213758 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:213775 a rdf:Statement ; up:source unirule:MF_00549 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:213776 a rdf:Statement ; up:attribution _:213759 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:213777 a rdf:Statement ; up:source unirule:MF_00549 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:213778 a rdf:Statement ; up:attribution _:213760 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:213779 a rdf:Statement ; up:source unirule:MF_00549 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:213780 a rdf:Statement ; up:attribution _:213761 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:213781 a rdf:Statement ; up:source unirule:MF_00549 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:213782 a rdf:Statement ; up:attribution _:213762 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00549 #Rule MF_00549 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01 VALUES ?supertaxon52 {taxon:2157 taxon:2} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00549 . ?thisOrganism rdfs:subClassOf+ ?supertaxon52 . BIND(URI(CONCAT(STR(?this), '#MF_00549a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00549a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00549a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00549a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionP0A73158 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A73160 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A731MF_0054953 . ?templateMotifSequenceMatchRegionP0A73158 faldo:begin ?templateMotifSequenceMatchBeginP0A73159 . ?templateMotifSequenceMatchBeginP0A73159 faldo:position ?templateMotifSequenceMatchBeginPositionP0A73154 ; faldo:reference isoform:P0A731-1 . ?templateMotifSequenceProfileAlignmentOperationP0A73160 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . ?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054964 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A731MF_0054955 . ?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054963 . ?targetMotifMatchRegionMatchBeginMF_0054963 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054956 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0054964 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_0054953, 1, (STRLEN(?templateMotifCigarP0A731MF_0054953) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_0054953, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0A73154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_0054955, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054955) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_0054955, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054955) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) . BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0054956) - 1) AS ?thisPositionOn12) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_0054953, 1, (STRLEN(?templateMotifCigarP0A731MF_0054953) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_0054953, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP0A73154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_0054955, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054955) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_0054955, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054955) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) . BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0054956) - 1) AS ?thisPositionOn13) . BIND(?this AS ?pfs1t69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse9) . FILTER (REGEX('TG[TAS]T', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) . BIND(URI(CONCAT(STR(?this), '#MF_00549a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionP0A73175 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A73177 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A731MF_0054970 . ?templateMotifSequenceMatchRegionP0A73175 faldo:begin ?templateMotifSequenceMatchBeginP0A73176 . ?templateMotifSequenceMatchBeginP0A73176 faldo:position ?templateMotifSequenceMatchBeginPositionP0A73171 ; faldo:reference isoform:P0A731-1 . ?templateMotifSequenceProfileAlignmentOperationP0A73177 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . ?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054981 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A731MF_0054972 . ?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054980 . ?targetMotifMatchRegionMatchBeginMF_0054980 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054973 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0054981 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_0054970, 1, (STRLEN(?templateMotifCigarP0A731MF_0054970) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_0054970, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP0A73171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_0054972, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054972) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054972, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_0054972, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054972) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054972, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) . BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0054973) - 1) AS ?thisPositionOn20) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_0054970, 1, (STRLEN(?templateMotifCigarP0A731MF_0054970) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_0054970, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0A73171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_0054972, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054972) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054972, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_0054972, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054972) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054972, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) . BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0054973) - 1) AS ?thisPositionOn21) . BIND(?this AS ?pfs1t86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)) = 'SG')) . BIND(URI(CONCAT(STR(?this), '#MF_00549a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionP0A73192 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A73194 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A731MF_0054987 . ?templateMotifSequenceMatchRegionP0A73192 faldo:begin ?templateMotifSequenceMatchBeginP0A73193 . ?templateMotifSequenceMatchBeginP0A73193 faldo:position ?templateMotifSequenceMatchBeginPositionP0A73188 ; faldo:reference isoform:P0A731-1 . ?templateMotifSequenceProfileAlignmentOperationP0A73194 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . ?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054998 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A731MF_0054989 . ?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054997 . ?targetMotifMatchRegionMatchBeginMF_0054997 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054990 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0054998 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_0054987, 1, (STRLEN(?templateMotifCigarP0A731MF_0054987) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_0054987, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP0A73188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_0054989, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054989) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054989, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_0054989, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054989) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054989, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0054990) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00549a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP0A731107 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A731109 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A731MF_00549102 . ?templateMotifSequenceMatchRegionP0A731107 faldo:begin ?templateMotifSequenceMatchBeginP0A731108 . ?templateMotifSequenceMatchBeginP0A731108 faldo:position ?templateMotifSequenceMatchBeginPositionP0A731103 ; faldo:reference isoform:P0A731-1 . ?templateMotifSequenceProfileAlignmentOperationP0A731109 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . ?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00549113 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A731MF_00549104 . ?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00549112 . ?targetMotifMatchRegionMatchBeginMF_00549112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00549105 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00549113 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_00549102, 1, (STRLEN(?templateMotifCigarP0A731MF_00549102) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_00549102, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP0A731103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_00549104, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_00549104, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_00549105) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs1t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00549a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP0A731122 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A731124 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A731MF_00549117 . ?templateMotifSequenceMatchRegionP0A731122 faldo:begin ?templateMotifSequenceMatchBeginP0A731123 . ?templateMotifSequenceMatchBeginP0A731123 faldo:position ?templateMotifSequenceMatchBeginPositionP0A731118 ; faldo:reference isoform:P0A731-1 . ?templateMotifSequenceProfileAlignmentOperationP0A731124 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . ?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00549128 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A731MF_00549119 . ?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00549127 . ?targetMotifMatchRegionMatchBeginMF_00549127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00549120 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00549128 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_00549117, 1, (STRLEN(?templateMotifCigarP0A731MF_00549117) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_00549117, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP0A731118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_00549119, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_00549119, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_00549120) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00549a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP0A731137 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A731139 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A731MF_00549132 . ?templateMotifSequenceMatchRegionP0A731137 faldo:begin ?templateMotifSequenceMatchBeginP0A731138 . ?templateMotifSequenceMatchBeginP0A731138 faldo:position ?templateMotifSequenceMatchBeginPositionP0A731133 ; faldo:reference isoform:P0A731-1 . ?templateMotifSequenceProfileAlignmentOperationP0A731139 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . ?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00549143 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A731MF_00549134 . ?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00549142 . ?targetMotifMatchRegionMatchBeginMF_00549142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00549135 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00549143 edam:has_input signature:MF_00549 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_00549132, 1, (STRLEN(?templateMotifCigarP0A731MF_00549132) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_00549132, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionP0A731133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_00549134, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_00549134, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00549135) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs1t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00549a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } } """ . .