CONSTRUCT { _:237246 up:source unirule:MF_00624 . _:237247 up:source unirule:MF_00624 . _:237248 up:source unirule:MF_00624 . _:237249 up:source unirule:MF_00624 . _:237250 up:source unirule:MF_00624 . _:237251 up:source unirule:MF_00624 . _:237252 up:source unirule:MF_00624 . _:237253 up:source unirule:MF_00624 . _:237254 up:source unirule:MF_00624 . _:237255 up:source unirule:MF_00624 . _:237256 up:source unirule:MF_00624 . _:237257 up:source unirule:MF_00624 . _:237258 up:source unirule:MF_00624 . _:237259 up:source unirule:MF_00624 . _:237260 up:source unirule:MF_00624 . _:237261 up:source unirule:MF_00624 . _:237262 up:source unirule:MF_00624 . _:237263 up:source unirule:MF_00624 . _:237264 up:source unirule:MF_00624 . _:237265 up:source unirule:MF_00624 . _:237266 up:source unirule:MF_00624 . _:237267 up:source unirule:MF_00624 . _:237268 up:source unirule:MF_00624 . _:237269 up:source unirule:MF_00624 . _:237270 up:source unirule:MF_00624 . _:237271 up:source unirule:MF_00624 . _:237272 up:source unirule:MF_00624 . _:237273 up:source unirule:MF_00624 . _:237274 up:source unirule:MF_00624 . _:237275 up:source unirule:MF_00624 . _:237276 up:source unirule:MF_00624 . _:237277 up:source unirule:MF_00624 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0005978 , GO:0008878 , keyword:119 , keyword:320 , keyword:321 , keyword:547 , keyword:548 , keyword:67 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.27' ; up:fullName 'Glucose-1-phosphate adenylyltransferase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'ADP-glucose pyrophosphorylase' ; up:shortName 'ADPGlc PPase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'ADP-glucose synthase' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'glgC' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/12120>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.27>. ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Glycan biosynthesis; glycogen biosynthesis.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.' . ?case9 up:classifiedWith keyword:21 . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; up:ligand ?ligand15 ; rdf:type up:Binding_Site_Annotation . ?pfsb13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?ligand15 rdfs:subClassOf chebi:58601 . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:58601 . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:58601 . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:58601 . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; rdf:type up:Site_Annotation ; rdfs:comment 'Could play a key role in the communication between the regulatory and the substrate sites' . ?pfsb41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; rdf:type up:Site_Annotation ; rdfs:comment 'Could play a key role in the communication between the regulatory and the substrate sites' . ?pfsb47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:32966 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:32966 . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:32966 . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; up:ligand ?ligand76 ; rdf:type up:Binding_Site_Annotation . ?pfsb74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand76 rdfs:subClassOf chebi:456215 . ?pfs79 up:annotation ?annotation80 . ?annotation80 faldo:begin ?pfsb81 ; faldo:end ?pfse82 ; up:ligand ?ligand83 ; rdf:type up:Binding_Site_Annotation . ?pfsb81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?ligand83 rdfs:subClassOf chebi:456215 . ?pfs86 up:annotation ?annotation87 . ?annotation87 faldo:begin ?pfsb88 ; faldo:end ?pfse89 ; up:ligand ?ligand90 ; rdf:type up:Binding_Site_Annotation . ?pfsb88 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?ligand90 rdfs:subClassOf chebi:456215 . ?pfs93 up:annotation ?annotation94 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; up:ligand ?ligand97 ; rdf:type up:Binding_Site_Annotation . ?pfsb95 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?ligand97 rdfs:subClassOf chebi:456215 . ?pfs100 up:annotation ?annotation101 . ?annotation101 faldo:begin ?pfsb102 ; faldo:end ?pfse103 ; up:ligand ?ligand104 ; rdf:type up:Binding_Site_Annotation . ?pfsb102 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?pfse103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?ligand104 rdfs:subClassOf chebi:456215 . ?pfs107 up:annotation ?annotation108 . ?annotation108 faldo:begin ?pfsb109 ; faldo:end ?pfse110 ; up:ligand ?ligand111 ; rdf:type up:Binding_Site_Annotation . ?pfsb109 faldo:position ?thisPositionOn112 ; rdf:type faldo:ExactPosition . ?pfse110 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?ligand111 rdfs:subClassOf chebi:456215 . _:237278 a rdf:Statement ; up:attribution _:237246 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:237279 a rdf:Statement ; up:attribution _:237247 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:237280 a rdf:Statement ; up:attribution _:237248 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:237281 a rdf:Statement ; up:attribution _:237249 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:237282 a rdf:Statement ; up:attribution _:237250 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:237283 a rdf:Statement ; up:attribution _:237251 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:237284 a rdf:Statement ; up:attribution _:237252 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:237285 a rdf:Statement ; up:attribution _:237253 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:237286 a rdf:Statement ; up:attribution _:237254 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:119 . _:237287 a rdf:Statement ; up:attribution _:237255 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:320 . _:237288 a rdf:Statement ; up:attribution _:237256 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:321 . _:237289 a rdf:Statement ; up:attribution _:237257 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:237290 a rdf:Statement ; up:attribution _:237258 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:237291 a rdf:Statement ; up:attribution _:237259 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:237292 a rdf:Statement ; up:attribution _:237260 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008878 . _:237293 a rdf:Statement ; up:attribution _:237261 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005978 . _:237294 a rdf:Statement ; up:attribution _:237262 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:21 . _:237295 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:237296 a rdf:Statement ; up:attribution _:237263 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:237297 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:237298 a rdf:Statement ; up:attribution _:237264 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:237299 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:237300 a rdf:Statement ; up:attribution _:237265 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:237301 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:237302 a rdf:Statement ; up:attribution _:237266 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:237303 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:237304 a rdf:Statement ; up:attribution _:237267 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:237305 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:237306 a rdf:Statement ; up:attribution _:237268 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:237307 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:237308 a rdf:Statement ; up:attribution _:237269 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:237309 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:237310 a rdf:Statement ; up:attribution _:237270 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:237311 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:237312 a rdf:Statement ; up:attribution _:237271 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:237313 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:237314 a rdf:Statement ; up:attribution _:237272 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:237315 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:237316 a rdf:Statement ; up:attribution _:237273 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:237317 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:237318 a rdf:Statement ; up:attribution _:237274 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:237319 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:237320 a rdf:Statement ; up:attribution _:237275 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:237321 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:237322 a rdf:Statement ; up:attribution _:237276 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:237323 a rdf:Statement ; up:source unirule:MF_00624 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . _:237324 a rdf:Statement ; up:attribution _:237277 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00624 #Rule MF_00624 Created by:bairoch on:2003-03-11 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00624 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00624a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00624a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00624a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00624a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00624a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00624a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP0A6V1119 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1121 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624114 . ?templateMotifSequenceMatchRegionP0A6V1119 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1120 . ?templateMotifSequenceMatchBeginP0A6V1120 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1115 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1121 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624125 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624116 . ?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624124 . ?targetMotifMatchRegionMatchBeginMF_00624124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624117 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624125 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624114, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624114) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624114, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionP0A6V1115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624116, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624116) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624116, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624116) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) . BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_00624117) - 1) AS ?thisPositionOn16) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624114, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624114) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624114, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP0A6V1115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624116, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624116) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624116, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624116) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) . BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_00624117) - 1) AS ?thisPositionOn17) . BIND(?this AS ?pfs1t130) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)) = 'EK')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP0A6V1136 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1138 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624131 . ?templateMotifSequenceMatchRegionP0A6V1136 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1137 . ?templateMotifSequenceMatchBeginP0A6V1137 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1132 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1138 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624142 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624133 . ?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624141 . ?targetMotifMatchRegionMatchBeginMF_00624141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624134 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624142 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624131, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624131) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624131, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP0A6V1132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624133, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624133) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624133, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624133) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) . BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_00624134) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t145) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP0A6V1151 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1153 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624146 . ?templateMotifSequenceMatchRegionP0A6V1151 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1152 . ?templateMotifSequenceMatchBeginP0A6V1152 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1147 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1153 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624157 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624148 . ?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624156 . ?targetMotifMatchRegionMatchBeginMF_00624156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624149 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624157 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624146, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624146) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624146, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP0A6V1147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624148, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624148) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624148, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624148) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) . BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_00624149) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs1t160) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP0A6V1166 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1168 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624161 . ?templateMotifSequenceMatchRegionP0A6V1166 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1167 . ?templateMotifSequenceMatchBeginP0A6V1167 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1162 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1168 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624172 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624163 . ?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624171 . ?targetMotifMatchRegionMatchBeginMF_00624171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624164 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624172 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624161, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624161) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624161, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP0A6V1162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624163, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624163) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624163, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624163) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) . BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00624164) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t175) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP0A6V1181 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1183 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624176 . ?templateMotifSequenceMatchRegionP0A6V1181 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1182 . ?templateMotifSequenceMatchBeginP0A6V1182 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1177 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1183 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624187 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624178 . ?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624186 . ?targetMotifMatchRegionMatchBeginMF_00624186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624179 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624187 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624176, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624176) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624176, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP0A6V1177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624178, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624178) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624178, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624178) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) . BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_00624179) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs1t190) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP0A6V1196 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1198 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624191 . ?templateMotifSequenceMatchRegionP0A6V1196 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1197 . ?templateMotifSequenceMatchBeginP0A6V1197 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1192 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1198 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624202 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624193 . ?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624201 . ?targetMotifMatchRegionMatchBeginMF_00624201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624194 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624202 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624191, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624191) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624191, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP0A6V1192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624193, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624193) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624193, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624193) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) . BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_00624194) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t205) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) . FILTER (REGEX('[WF]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00624a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP0A6V1211 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1213 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624206 . ?templateMotifSequenceMatchRegionP0A6V1211 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1212 . ?templateMotifSequenceMatchBeginP0A6V1212 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1207 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1213 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624217 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624208 . ?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624216 . ?targetMotifMatchRegionMatchBeginMF_00624216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624209 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624217 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:543 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624206, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624206) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624206, CONCAT('^(?:-*[^-]){', STR(((419 - ?templateMotifSequenceMatchBeginPositionP0A6V1207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624208, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624208) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624208, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624208) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) . BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_00624209) - 1) AS ?thisPositionOn56) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624206, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624206) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624206, CONCAT('^(?:-*[^-]){', STR(((423 - ?templateMotifSequenceMatchBeginPositionP0A6V1207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624208, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624208) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624208, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624208) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) . BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_00624209) - 1) AS ?thisPositionOn57) . BIND(?this AS ?pfs2t222) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER (REGEX('R[ED][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn56, (?thisPositionOn57 - ?thisPositionOn56)))) . BIND(URI(CONCAT(STR(?this), '#MF_00624a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP0A6V1228 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1230 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624223 . ?templateMotifSequenceMatchRegionP0A6V1228 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1229 . ?templateMotifSequenceMatchBeginP0A6V1229 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1224 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1230 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624234 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624225 . ?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624233 . ?targetMotifMatchRegionMatchBeginMF_00624233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624226 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624234 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:543 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624223, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624223) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624223, CONCAT('^(?:-*[^-]){', STR(((429 - ?templateMotifSequenceMatchBeginPositionP0A6V1224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624225, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624225) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624225, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624225) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) . BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_00624226) - 1) AS ?thisPositionOn63) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624223, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624223) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624223, CONCAT('^(?:-*[^-]){', STR(((431 - ?templateMotifSequenceMatchBeginPositionP0A6V1224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624225, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624225) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624225, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624225) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) . BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_00624226) - 1) AS ?thisPositionOn64) . BIND(?this AS ?pfs2t239) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, (?thisPositionOn64 - ?thisPositionOn63)) = 'QER')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP0A6V1245 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1247 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624240 . ?templateMotifSequenceMatchRegionP0A6V1245 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1246 . ?templateMotifSequenceMatchBeginP0A6V1246 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1241 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1247 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624251 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624242 . ?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624250 . ?targetMotifMatchRegionMatchBeginMF_00624250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624243 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624251 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:543 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624240, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624240) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624240, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP0A6V1241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624242, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624242) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624242, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624242) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) . BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_00624243) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs2t254) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP0A6V1260 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1262 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624255 . ?templateMotifSequenceMatchRegionP0A6V1260 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1261 . ?templateMotifSequenceMatchBeginP0A6V1261 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1256 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1262 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624266 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624257 . ?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624265 . ?targetMotifMatchRegionMatchBeginMF_00624265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624258 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624266 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:543 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624255, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624255) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624255, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP0A6V1256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624257, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624257) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624257, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624257) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) . BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_00624258) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs2t269) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP0A6V1275 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1277 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624270 . ?templateMotifSequenceMatchRegionP0A6V1275 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1276 . ?templateMotifSequenceMatchBeginP0A6V1276 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1271 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1277 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624281 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624272 . ?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624280 . ?targetMotifMatchRegionMatchBeginMF_00624280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624273 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624281 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:543 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624270, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624270) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624270, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP0A6V1271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624272, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624272) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624272, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624272) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) . BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00624273) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs2t284) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a80')) AS ?annotation80) . BIND(?this AS ?pfs79) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP0A6V1290 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1292 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624285 . ?templateMotifSequenceMatchRegionP0A6V1290 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1291 . ?templateMotifSequenceMatchBeginP0A6V1291 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1286 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1292 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624296 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624287 . ?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624295 . ?targetMotifMatchRegionMatchBeginMF_00624295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624288 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624296 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:543 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624285, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624285) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624285, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP0A6V1286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624287, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624287, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) . BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_00624288) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs2t299) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a87')) AS ?annotation87) . BIND(?this AS ?pfs86) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch304 faldo:location ?templateMotifSequenceMatchRegionP0A6V1305 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1307 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624300 . ?templateMotifSequenceMatchRegionP0A6V1305 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1306 . ?templateMotifSequenceMatchBeginP0A6V1306 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1301 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1307 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch308 faldo:location ?targetMotifMatchRegionMatch309 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624311 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624302 . ?targetMotifMatchRegionMatch309 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624310 . ?targetMotifMatchRegionMatchBeginMF_00624310 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624303 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624311 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:543 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624300, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624300) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624300, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP0A6V1301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624302, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624302) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624302, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624302) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) . BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_00624303) - 1) AS ?thisPositionOn98) . BIND(?thisPositionOn98 AS ?thisPositionOn99) . BIND(?this AS ?pfs2t314) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00624a94')) AS ?annotation94) . BIND(?this AS ?pfs93) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP0A6V1320 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1322 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624315 . ?templateMotifSequenceMatchRegionP0A6V1320 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1321 . ?templateMotifSequenceMatchBeginP0A6V1321 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1316 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1322 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624326 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624317 . ?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624325 . ?targetMotifMatchRegionMatchBeginMF_00624325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624318 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624326 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:543 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624315, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624315) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624315, CONCAT('^(?:-*[^-]){', STR(((370 - ?templateMotifSequenceMatchBeginPositionP0A6V1316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624317, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624317) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624317, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624317) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) . BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_00624318) - 1) AS ?thisPositionOn105) . BIND(?thisPositionOn105 AS ?thisPositionOn106) . BIND(?this AS ?pfs2t329) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) . FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00624a101')) AS ?annotation101) . BIND(?this AS ?pfs100) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP0A6V1335 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1337 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6V1MF_00624330 . ?templateMotifSequenceMatchRegionP0A6V1335 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1336 . ?templateMotifSequenceMatchBeginP0A6V1336 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1331 ; faldo:reference isoform:P0A6V1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6V1337 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624341 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6V1MF_00624332 . ?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624340 . ?targetMotifMatchRegionMatchBeginMF_00624340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624333 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00624341 edam:has_input signature:MF_00624 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:543 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624330, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624330) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624330, CONCAT('^(?:-*[^-]){', STR(((386 - ?templateMotifSequenceMatchBeginPositionP0A6V1331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624332, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624332) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624332, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624332) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) . BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_00624333) - 1) AS ?thisPositionOn112) . BIND(?thisPositionOn112 AS ?thisPositionOn113) . BIND(?this AS ?pfs2t344) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00624a108')) AS ?annotation108) . BIND(?this AS ?pfs107) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1763 . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:543 . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1763 . })) . BIND(?this AS ?case10) . } }