CONSTRUCT { _:258687 up:source unirule:MF_00692 . _:258688 up:source unirule:MF_00692 . _:258689 up:source unirule:MF_00692 . _:258690 up:source unirule:MF_00692 . _:258691 up:source unirule:MF_00692 . _:258692 up:source unirule:MF_00692 . _:258693 up:source unirule:MF_00692 . _:258694 up:source unirule:MF_00692 . _:258695 up:source unirule:MF_00692 . _:258696 up:source unirule:MF_00692 . _:258697 up:source unirule:MF_00692 . _:258698 up:source unirule:MF_00692 . _:258699 up:source unirule:MF_00692 . _:258700 up:source unirule:MF_00692 . _:258701 up:source unirule:MF_00692 . _:258702 up:source unirule:MF_00692 . _:258703 up:source unirule:MF_00692 . _:258704 up:source unirule:MF_00692 . _:258705 up:source unirule:MF_00692 . _:258706 up:source unirule:MF_00692 . _:258707 up:source unirule:MF_00692 . _:258708 up:source unirule:MF_00692 . _:258709 up:source unirule:MF_00692 . _:258710 up:source unirule:MF_00692 . _:258711 up:source unirule:MF_00692 . _:258712 up:source unirule:MF_00692 . _:258713 up:source unirule:MF_00692 . _:258714 up:source unirule:MF_00692 . _:258715 up:source unirule:MF_00692 . _:258716 up:source unirule:MF_00692 . _:258717 up:source unirule:MF_00692 . _:258718 up:source unirule:MF_00692 . _:258719 up:source unirule:MF_00692 . _:258720 up:source unirule:MF_00692 . _:258721 up:source unirule:MF_00692 . _:258722 up:source unirule:MF_00692 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation9 , ?annotation11 , ?annotation13 , ?annotation15 , ?annotation17 , ?annotation18 ; up:classifiedWith GO:0000287 , GO:0005524 , GO:0016779 , GO:0030145 , keyword:460 , keyword:464 , keyword:479 , keyword:547 , keyword:548 , keyword:67 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.-' ; up:fullName 'Protein nucleotidyltransferase YdiU' ; rdf:type up:Structured_Name . ?name1 up:ecName '2.7.7.108' ; up:fullName 'Protein adenylyltransferase YdiU' ; rdf:type up:Structured_Name . ?name2 up:ecName '2.7.7.-' ; up:fullName 'Protein uridylyltransferase YdiU' ; rdf:type up:Structured_Name . ?gene3 skos:altLabel 'selO' ; skos:prefLabel 'ydiU' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Nucleotidyltransferase involved in the post-translational modification of proteins. It can catalyze the addition of adenosine monophosphate (AMP) or uridine monophosphate (UMP) to a protein, resulting in modifications known as AMPylation and UMPylation.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/58120>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.108>. ?annotation7 up:activity ?activity8 ; rdf:type up:Catalytic_Activity_Annotation . ?activity8 up:catalyticActivity <http://rdf.rhea-db.org/54292>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.108>. ?annotation9 up:activity ?activity10 ; rdf:type up:Catalytic_Activity_Annotation . ?activity10 up:catalyticActivity <http://rdf.rhea-db.org/54288>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.108>. ?annotation11 up:activity ?activity12 ; rdf:type up:Catalytic_Activity_Annotation . ?activity12 up:catalyticActivity <http://rdf.rhea-db.org/83891>. ?annotation13 up:activity ?activity14 ; rdf:type up:Catalytic_Activity_Annotation . ?activity14 up:catalyticActivity <http://rdf.rhea-db.org/64604>. ?annotation15 up:activity ?activity16 ; rdf:type up:Catalytic_Activity_Annotation . ?activity16 up:catalyticActivity <http://rdf.rhea-db.org/83887>. ?annotation17 up:cofactor chebi:18420 , chebi:29035 ; rdf:type up:Cofactor_Annotation . ?annotation18 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the SELO family.' . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:30616 . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:30616 . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf chebi:30616 . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf chebi:30616 . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; up:ligand ?ligand57 ; rdf:type up:Binding_Site_Annotation . ?pfsb55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?ligand57 rdfs:subClassOf chebi:30616 . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; up:ligand ?ligand64 ; rdf:type up:Binding_Site_Annotation . ?pfsb62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?ligand64 rdfs:subClassOf chebi:30616 . ?pfs67 up:annotation ?annotation68 . ?annotation68 faldo:begin ?pfsb69 ; faldo:end ?pfse70 ; up:ligand ?ligand71 ; rdf:type up:Binding_Site_Annotation . ?pfsb69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?ligand71 rdfs:subClassOf chebi:30616 . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; up:ligand ?ligand78 ; rdf:type up:Binding_Site_Annotation . ?pfsb76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?ligand78 rdfs:subClassOf chebi:30616 . ?pfs81 up:annotation ?annotation82 . ?annotation82 faldo:begin ?pfsb83 ; faldo:end ?pfse84 ; up:ligand ?ligand85 ; rdf:type up:Binding_Site_Annotation . ?pfsb83 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?pfse84 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?ligand85 rdfs:subClassOf chebi:18420 . ?pfs88 up:annotation ?annotation89 . ?annotation89 faldo:begin ?pfsb90 ; faldo:end ?pfse91 ; up:ligand ?ligand92 ; rdf:type up:Binding_Site_Annotation . ?pfsb90 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?pfse91 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?ligand92 rdfs:subClassOf chebi:30616 . ?pfs95 up:annotation ?annotation96 . ?annotation96 faldo:begin ?pfsb97 ; faldo:end ?pfse98 ; up:ligand ?ligand99 ; rdf:type up:Binding_Site_Annotation . ?pfsb97 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?pfse98 faldo:position ?thisPositionOn101 ; rdf:type faldo:ExactPosition . ?ligand99 rdfs:subClassOf chebi:18420 . _:258723 a rdf:Statement ; up:attribution _:258687 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:258724 a rdf:Statement ; up:attribution _:258688 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:258725 a rdf:Statement ; up:attribution _:258689 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:258726 a rdf:Statement ; up:attribution _:258690 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:258727 a rdf:Statement ; up:attribution _:258691 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:258728 a rdf:Statement ; up:attribution _:258692 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:258729 a rdf:Statement ; up:attribution _:258693 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:258730 a rdf:Statement ; up:attribution _:258694 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:258731 a rdf:Statement ; up:attribution _:258695 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:258732 a rdf:Statement ; up:attribution _:258696 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:258733 a rdf:Statement ; up:attribution _:258697 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:258734 a rdf:Statement ; up:attribution _:258698 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:258735 a rdf:Statement ; up:attribution _:258699 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:258736 a rdf:Statement ; up:attribution _:258700 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:258737 a rdf:Statement ; up:attribution _:258701 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:258738 a rdf:Statement ; up:attribution _:258702 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:464 . _:258739 a rdf:Statement ; up:attribution _:258703 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:258740 a rdf:Statement ; up:attribution _:258704 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:258741 a rdf:Statement ; up:attribution _:258705 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:258742 a rdf:Statement ; up:attribution _:258706 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:258743 a rdf:Statement ; up:attribution _:258707 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:258744 a rdf:Statement ; up:attribution _:258708 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:258745 a rdf:Statement ; up:attribution _:258709 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030145 . _:258746 a rdf:Statement ; up:attribution _:258710 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016779 . _:258747 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:258748 a rdf:Statement ; up:attribution _:258711 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:258749 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:258750 a rdf:Statement ; up:attribution _:258712 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:258751 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:258752 a rdf:Statement ; up:attribution _:258713 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:258753 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:258754 a rdf:Statement ; up:attribution _:258714 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:258755 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:258756 a rdf:Statement ; up:attribution _:258715 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:258757 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:258758 a rdf:Statement ; up:attribution _:258716 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:258759 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:258760 a rdf:Statement ; up:attribution _:258717 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:258761 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:258762 a rdf:Statement ; up:attribution _:258718 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:258763 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:258764 a rdf:Statement ; up:attribution _:258719 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:258765 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:258766 a rdf:Statement ; up:attribution _:258720 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:258767 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:258768 a rdf:Statement ; up:attribution _:258721 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:258769 a rdf:Statement ; up:source unirule:MF_00692 ; rdf:subject ?pfs95 ; rdf:predicate up:annotation ; rdf:object ?annotation96 . _:258770 a rdf:Statement ; up:attribution _:258722 ; rdf:subject ?pfs95 ; rdf:predicate up:annotation ; rdf:object ?annotation96 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00692 #Rule MF_00692 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-02-14 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00692 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00692a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00692a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00692a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00692a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00692a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00692a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00692a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00692a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_00692a13')) AS ?annotation13) . BIND(URI(CONCAT(STR(?this), '#MF_00692a15')) AS ?annotation15) . BIND(URI(CONCAT(STR(?this), '#MF_00692a17')) AS ?annotation17) . BIND(URI(CONCAT(STR(?this), '#MF_00692a18')) AS ?annotation18) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionQ87VB1107 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1109 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692102 . ?templateMotifSequenceMatchRegionQ87VB1107 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1108 . ?templateMotifSequenceMatchBeginQ87VB1108 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1103 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1109 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692113 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692104 . ?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692112 . ?targetMotifMatchRegionMatchBeginMF_00692112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692105 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692113 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692102, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692102) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692102, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionQ87VB1103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692104, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692104) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692104, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692104) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_00692105) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionQ87VB1122 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1124 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692117 . ?templateMotifSequenceMatchRegionQ87VB1122 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1123 . ?templateMotifSequenceMatchBeginQ87VB1123 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1118 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1124 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692128 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692119 . ?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692127 . ?targetMotifMatchRegionMatchBeginMF_00692127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692120 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692128 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692117, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692117) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692117, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ87VB1118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692119, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692119) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692119, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692119) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_00692120) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs1t131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionQ87VB1137 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1139 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692132 . ?templateMotifSequenceMatchRegionQ87VB1137 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1138 . ?templateMotifSequenceMatchBeginQ87VB1138 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1133 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1139 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692143 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692134 . ?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692142 . ?targetMotifMatchRegionMatchBeginMF_00692142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692135 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692143 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692132, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692132) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692132, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionQ87VB1133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692134, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692134) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692134, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692134) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00692135) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionQ87VB1152 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1154 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692147 . ?templateMotifSequenceMatchRegionQ87VB1152 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1153 . ?templateMotifSequenceMatchBeginQ87VB1153 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1148 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1154 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692158 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692149 . ?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692157 . ?targetMotifMatchRegionMatchBeginMF_00692157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692150 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692158 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692147, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692147) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692147, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionQ87VB1148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692149, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692149) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692149, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692149) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_00692150) - 1) AS ?thisPositionOn44) . BIND(?thisPositionOn44 AS ?thisPositionOn45) . BIND(?this AS ?pfs1t161) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionQ87VB1167 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1169 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692162 . ?templateMotifSequenceMatchRegionQ87VB1167 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1168 . ?templateMotifSequenceMatchBeginQ87VB1168 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1163 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1169 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692173 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692164 . ?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692172 . ?targetMotifMatchRegionMatchBeginMF_00692172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692165 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692173 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692162, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692162) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692162, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionQ87VB1163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692164, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692164) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692164, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692164) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_00692165) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs1t176) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionQ87VB1182 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1184 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692177 . ?templateMotifSequenceMatchRegionQ87VB1182 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1183 . ?templateMotifSequenceMatchBeginQ87VB1183 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1178 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1184 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692188 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692179 . ?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692187 . ?targetMotifMatchRegionMatchBeginMF_00692187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692180 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692188 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692177, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692177) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692177, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionQ87VB1178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692179, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692179) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692179, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692179) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) . BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_00692180) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs1t191) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionQ87VB1197 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1199 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692192 . ?templateMotifSequenceMatchRegionQ87VB1197 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1198 . ?templateMotifSequenceMatchBeginQ87VB1198 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1193 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1199 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692203 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692194 . ?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692202 . ?targetMotifMatchRegionMatchBeginMF_00692202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692195 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692203 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692192, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692192) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692192, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionQ87VB1193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692194, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692194) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692194, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692194) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) . BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_00692195) - 1) AS ?thisPositionOn65) . BIND(?thisPositionOn65 AS ?thisPositionOn66) . BIND(?this AS ?pfs1t206) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionQ87VB1212 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1214 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692207 . ?templateMotifSequenceMatchRegionQ87VB1212 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1213 . ?templateMotifSequenceMatchBeginQ87VB1213 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1208 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1214 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692218 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692209 . ?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692217 . ?targetMotifMatchRegionMatchBeginMF_00692217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692210 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692218 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692207, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692207) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692207, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ87VB1208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692209, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692209) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692209, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692209) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) . BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_00692210) - 1) AS ?thisPositionOn72) . BIND(?thisPositionOn72 AS ?thisPositionOn73) . BIND(?this AS ?pfs1t221) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a68')) AS ?annotation68) . BIND(?this AS ?pfs67) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionQ87VB1227 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1229 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692222 . ?templateMotifSequenceMatchRegionQ87VB1227 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1228 . ?templateMotifSequenceMatchBeginQ87VB1228 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1223 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1229 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692233 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692224 . ?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692232 . ?targetMotifMatchRegionMatchBeginMF_00692232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692225 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692233 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692222, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692222) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692222, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionQ87VB1223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692224, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692224) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692224, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692224) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) . BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_00692225) - 1) AS ?thisPositionOn79) . BIND(?thisPositionOn79 AS ?thisPositionOn80) . BIND(?this AS ?pfs1t236) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionQ87VB1242 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1244 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692237 . ?templateMotifSequenceMatchRegionQ87VB1242 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1243 . ?templateMotifSequenceMatchBeginQ87VB1243 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1238 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1244 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692248 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692239 . ?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692247 . ?targetMotifMatchRegionMatchBeginMF_00692247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692240 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692248 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692237, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692237) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692237, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionQ87VB1238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692239, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692239) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692239, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692239) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) . BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_00692240) - 1) AS ?thisPositionOn86) . BIND(?thisPositionOn86 AS ?thisPositionOn87) . BIND(?this AS ?pfs1t251) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a82')) AS ?annotation82) . BIND(?this AS ?pfs81) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionQ87VB1257 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1259 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692252 . ?templateMotifSequenceMatchRegionQ87VB1257 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1258 . ?templateMotifSequenceMatchBeginQ87VB1258 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1253 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1259 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692263 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692254 . ?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692262 . ?targetMotifMatchRegionMatchBeginMF_00692262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692255 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692263 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692252, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692252) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692252, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionQ87VB1253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692254, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692254) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692254, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692254) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) . BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_00692255) - 1) AS ?thisPositionOn93) . BIND(?thisPositionOn93 AS ?thisPositionOn94) . BIND(?this AS ?pfs1t266) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a89')) AS ?annotation89) . BIND(?this AS ?pfs88) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionQ87VB1272 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1274 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ87VB1MF_00692267 . ?templateMotifSequenceMatchRegionQ87VB1272 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1273 . ?templateMotifSequenceMatchBeginQ87VB1273 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1268 ; faldo:reference isoform:Q87VB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ87VB1274 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . ?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692278 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ87VB1MF_00692269 . ?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692277 . ?targetMotifMatchRegionMatchBeginMF_00692277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692270 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00692278 edam:has_input signature:MF_00692 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692267, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692267) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692267, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionQ87VB1268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692269, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692269) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692269, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692269) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) . BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_00692270) - 1) AS ?thisPositionOn100) . BIND(?thisPositionOn100 AS ?thisPositionOn101) . BIND(?this AS ?pfs1t281) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00692a96')) AS ?annotation96) . BIND(?this AS ?pfs95) . } }