CONSTRUCT { _:294802 up:source unirule:MF_00842 . _:294803 up:source unirule:MF_00842 . _:294804 up:source unirule:MF_00842 . _:294805 up:source unirule:MF_00842 . _:294806 up:source unirule:MF_00842 . _:294807 up:source unirule:MF_00842 . _:294808 up:source unirule:MF_00842 . _:294809 up:source unirule:MF_00842 . _:294810 up:source unirule:MF_00842 . _:294811 up:source unirule:MF_00842 . _:294812 up:source unirule:MF_00842 . _:294813 up:source unirule:MF_00842 . _:294814 up:source unirule:MF_00842 . _:294815 up:source unirule:MF_00842 . _:294816 up:source unirule:MF_00842 . _:294817 up:source unirule:MF_00842 . _:294818 up:source unirule:MF_00842 . _:294819 up:source unirule:MF_00842 . _:294820 up:source unirule:MF_00842 . _:294821 up:source unirule:MF_00842 . _:294822 up:source unirule:MF_00842 . _:294823 up:source unirule:MF_00842 . _:294824 up:source unirule:MF_00842 . _:294825 up:source unirule:MF_00842 . _:294826 up:source unirule:MF_00842 . _:294827 up:source unirule:MF_00842 . _:294828 up:source unirule:MF_00842 . _:294829 up:source unirule:MF_00842 . _:294830 up:source unirule:MF_00842 . _:294831 up:source unirule:MF_00842 . _:294832 up:source unirule:MF_00842 . _:294833 up:source unirule:MF_00842 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0009279 , GO:0015288 , GO:0034220 , keyword:1134 , keyword:406 , keyword:472 , keyword:626 , keyword:812 , keyword:813 , keyword:998 ; up:recommendedName ?name0 . ?name0 up:fullName 'Outer membrane protein A' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Outer membrane porin A' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'ompA' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'With TolR probably plays a role in maintaining the position of the peptidoglycan cell wall in the periplasm. Acts as a porin with low permeability that allows slow penetration of small solutes; an internal gate slows down solute passage.' . ?annotation4 a up:Subunit_Annotation ; rdfs:comment 'Monomer and homodimer.' . ?annotation5 a up:Subcellular_Location_Annotation . ?annotation5li6 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation7 a up:Domain_Annotation ; rdfs:comment 'The extracellular loops are most variable in sequence, and in some bacteria confer sensitivity to phage and/or colicins.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the outer membrane OOP (TC 1.B.6) superfamily. OmpA family.' . ?case9 up:classifiedWith keyword:1015 . ?case10 up:classifiedWith keyword:184 . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; rdf:type up:Disulfide_Bond_Annotation . ?pfsb13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Beta stranded' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Beta stranded' . ?pfsb25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Beta stranded' . ?pfsb31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Beta stranded' . ?pfsb37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Beta stranded' . ?pfsb43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Beta stranded' . ?pfsb49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Beta stranded' . ?pfsb55 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Beta stranded' . ?pfsb61 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; rdf:type up:Site_Annotation ; rdfs:comment 'Part of salt bridge gating mechanism' . ?pfsb67 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; rdf:type up:Site_Annotation ; rdfs:comment 'Part of salt bridge gating mechanism' . ?pfsb73 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?sam77 up:classifiedWith keyword:732 . ?signal78 faldo:begin ?signalb79 ; faldo:end ?signale80 . ?signalb79 faldo:position ?signalbp81 . ?signale80 faldo:position ?signalep82 . ?keyword83 up:range ?signal78 . _:294834 a rdf:Statement ; up:attribution _:294802 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:294835 a rdf:Statement ; up:attribution _:294803 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:294836 a rdf:Statement ; up:attribution _:294804 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:294837 a rdf:Statement ; up:attribution _:294805 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:294838 a rdf:Statement ; up:attribution _:294806 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:294839 a rdf:Statement ; up:attribution _:294807 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:294840 a rdf:Statement ; up:attribution _:294808 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:294841 a rdf:Statement ; up:attribution _:294809 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:294842 a rdf:Statement ; up:attribution _:294810 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:998 . _:294843 a rdf:Statement ; up:attribution _:294811 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:406 . _:294844 a rdf:Statement ; up:attribution _:294812 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:294845 a rdf:Statement ; up:attribution _:294813 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:626 . _:294846 a rdf:Statement ; up:attribution _:294814 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:294847 a rdf:Statement ; up:attribution _:294815 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1134 . _:294848 a rdf:Statement ; up:attribution _:294816 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:294849 a rdf:Statement ; up:attribution _:294817 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009279 . _:294850 a rdf:Statement ; up:attribution _:294818 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0034220 . _:294851 a rdf:Statement ; up:attribution _:294819 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015288 . _:294852 a rdf:Statement ; up:attribution _:294820 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1015 . _:294853 a rdf:Statement ; up:attribution _:294821 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:184 . _:294854 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:294855 a rdf:Statement ; up:attribution _:294822 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:294856 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:294857 a rdf:Statement ; up:attribution _:294823 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:294858 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:294859 a rdf:Statement ; up:attribution _:294824 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:294860 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:294861 a rdf:Statement ; up:attribution _:294825 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:294862 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:294863 a rdf:Statement ; up:attribution _:294826 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:294864 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:294865 a rdf:Statement ; up:attribution _:294827 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:294866 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:294867 a rdf:Statement ; up:attribution _:294828 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:294868 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:294869 a rdf:Statement ; up:attribution _:294829 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:294870 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:294871 a rdf:Statement ; up:attribution _:294830 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:294872 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:294873 a rdf:Statement ; up:attribution _:294831 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:294874 a rdf:Statement ; up:source unirule:MF_00842 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:294875 a rdf:Statement ; up:attribution _:294832 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:294876 a rdf:Statement ; up:attribution _:294833 ; rdf:subject ?sam77 ; rdf:predicate up:classifiedWith ; rdf:object keyword:732 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00842 #Rule MF_00842 Created by:aauchinc on:2019-04-25 Modified by:crivoire on:2023-02-07 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00842 . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(URI(CONCAT(STR(?this), '#MF_00842a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00842a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00842a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00842a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00842a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00842a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00842a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP0A91089 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A91091 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_0084284 . ?templateMotifSequenceMatchRegionP0A91089 faldo:begin ?templateMotifSequenceMatchBeginP0A91090 . ?templateMotifSequenceMatchBeginP0A91090 faldo:position ?templateMotifSequenceMatchBeginPositionP0A91085 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A91091 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0084295 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_0084286 . ?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0084294 . ?targetMotifMatchRegionMatchBeginMF_0084294 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0084287 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0084295 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagDisulfide) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_0084284, 1, (STRLEN(?templateMotifCigarP0A910MF_0084284) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_0084284, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP0A91085) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_0084286, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_0084286) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_0084286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_0084286, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_0084286) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_0084286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0084287) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_0084284, 1, (STRLEN(?templateMotifCigarP0A910MF_0084284) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_0084284, CONCAT('^(?:-*[^-]){', STR(((323 - ?templateMotifSequenceMatchBeginPositionP0A91085) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_0084286, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_0084286) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_0084286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_0084286, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_0084286) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_0084286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) . BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0084287) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) . BIND(URI(CONCAT(STR(?this), '#MF_00842a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP0A910106 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910108 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_00842101 . ?templateMotifSequenceMatchRegionP0A910106 faldo:begin ?templateMotifSequenceMatchBeginP0A910107 . ?templateMotifSequenceMatchBeginP0A910107 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910102 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A910108 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842112 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_00842103 . ?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842111 . ?targetMotifMatchRegionMatchBeginMF_00842111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842104 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00842112 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842101, 1, (STRLEN(?templateMotifCigarP0A910MF_00842101) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842101, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP0A910102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842103, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842103, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_00842104) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842101, 1, (STRLEN(?templateMotifCigarP0A910MF_00842101) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842101, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP0A910102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842103, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842103, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) . BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_00842104) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs2t117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) . BIND(URI(CONCAT(STR(?this), '#MF_00842a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP0A910123 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910125 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_00842118 . ?templateMotifSequenceMatchRegionP0A910123 faldo:begin ?templateMotifSequenceMatchBeginP0A910124 . ?templateMotifSequenceMatchBeginP0A910124 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910119 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A910125 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842129 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_00842120 . ?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842128 . ?targetMotifMatchRegionMatchBeginMF_00842128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842121 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00842129 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842118, 1, (STRLEN(?templateMotifCigarP0A910MF_00842118) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842118, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP0A910119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842120, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842120, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00842121) - 1) AS ?thisPositionOn27) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842118, 1, (STRLEN(?templateMotifCigarP0A910MF_00842118) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842118, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0A910119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842120, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842120, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00842121) - 1) AS ?thisPositionOn28) . BIND(?this AS ?pfs2t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) . FILTER ((BOUND(?thisPositionOn27) && BOUND(?thisPositionOn28))) . BIND(URI(CONCAT(STR(?this), '#MF_00842a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP0A910140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_00842135 . ?templateMotifSequenceMatchRegionP0A910140 faldo:begin ?templateMotifSequenceMatchBeginP0A910141 . ?templateMotifSequenceMatchBeginP0A910141 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910136 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A910142 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_00842137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842145 . ?targetMotifMatchRegionMatchBeginMF_00842145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00842146 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842135, 1, (STRLEN(?templateMotifCigarP0A910MF_00842135) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842135, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP0A910136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842137, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842137, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00842138) - 1) AS ?thisPositionOn33) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842135, 1, (STRLEN(?templateMotifCigarP0A910MF_00842135) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842135, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP0A910136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842137, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842137, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00842138) - 1) AS ?thisPositionOn34) . BIND(?this AS ?pfs2t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) . FILTER ((BOUND(?thisPositionOn33) && BOUND(?thisPositionOn34))) . BIND(URI(CONCAT(STR(?this), '#MF_00842a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP0A910157 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910159 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_00842152 . ?templateMotifSequenceMatchRegionP0A910157 faldo:begin ?templateMotifSequenceMatchBeginP0A910158 . ?templateMotifSequenceMatchBeginP0A910158 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910153 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A910159 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842163 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_00842154 . ?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842162 . ?targetMotifMatchRegionMatchBeginMF_00842162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842155 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00842163 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842152, 1, (STRLEN(?templateMotifCigarP0A910MF_00842152) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842152, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionP0A910153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842154, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842154) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842154, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842154) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) . BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00842155) - 1) AS ?thisPositionOn39) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842152, 1, (STRLEN(?templateMotifCigarP0A910MF_00842152) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842152, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP0A910153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842154, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842154) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842154, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842154) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) . BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00842155) - 1) AS ?thisPositionOn40) . BIND(?this AS ?pfs2t168) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) . FILTER ((BOUND(?thisPositionOn39) && BOUND(?thisPositionOn40))) . BIND(URI(CONCAT(STR(?this), '#MF_00842a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP0A910174 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910176 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_00842169 . ?templateMotifSequenceMatchRegionP0A910174 faldo:begin ?templateMotifSequenceMatchBeginP0A910175 . ?templateMotifSequenceMatchBeginP0A910175 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910170 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A910176 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842180 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_00842171 . ?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842179 . ?targetMotifMatchRegionMatchBeginMF_00842179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842172 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00842180 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842169, 1, (STRLEN(?templateMotifCigarP0A910MF_00842169) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842169, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP0A910170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842171, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842171, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) . BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00842172) - 1) AS ?thisPositionOn45) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842169, 1, (STRLEN(?templateMotifCigarP0A910MF_00842169) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842169, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP0A910170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842171, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842171, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) . BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_00842172) - 1) AS ?thisPositionOn46) . BIND(?this AS ?pfs2t185) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) . FILTER ((BOUND(?thisPositionOn45) && BOUND(?thisPositionOn46))) . BIND(URI(CONCAT(STR(?this), '#MF_00842a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionP0A910191 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910193 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_00842186 . ?templateMotifSequenceMatchRegionP0A910191 faldo:begin ?templateMotifSequenceMatchBeginP0A910192 . ?templateMotifSequenceMatchBeginP0A910192 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910187 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A910193 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842197 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_00842188 . ?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842196 . ?targetMotifMatchRegionMatchBeginMF_00842196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842189 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00842197 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842186, 1, (STRLEN(?templateMotifCigarP0A910MF_00842186) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842186, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionP0A910187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842188, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842188) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842188, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842188) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) . BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_00842189) - 1) AS ?thisPositionOn51) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842186, 1, (STRLEN(?templateMotifCigarP0A910MF_00842186) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842186, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP0A910187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842188, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842188) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842188, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842188) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) . BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_00842189) - 1) AS ?thisPositionOn52) . BIND(?this AS ?pfs2t202) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) . FILTER ((BOUND(?thisPositionOn51) && BOUND(?thisPositionOn52))) . BIND(URI(CONCAT(STR(?this), '#MF_00842a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionP0A910208 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910210 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_00842203 . ?templateMotifSequenceMatchRegionP0A910208 faldo:begin ?templateMotifSequenceMatchBeginP0A910209 . ?templateMotifSequenceMatchBeginP0A910209 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910204 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A910210 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842214 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_00842205 . ?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842213 . ?targetMotifMatchRegionMatchBeginMF_00842213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842206 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00842214 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842203, 1, (STRLEN(?templateMotifCigarP0A910MF_00842203) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842203, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP0A910204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842205, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842205) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842205, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842205) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) . BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00842206) - 1) AS ?thisPositionOn57) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842203, 1, (STRLEN(?templateMotifCigarP0A910MF_00842203) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842203, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP0A910204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842205, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842205) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842205, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842205) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_00842206) - 1) AS ?thisPositionOn58) . BIND(?this AS ?pfs2t219) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) . FILTER ((BOUND(?thisPositionOn57) && BOUND(?thisPositionOn58))) . BIND(URI(CONCAT(STR(?this), '#MF_00842a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP0A910225 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910227 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_00842220 . ?templateMotifSequenceMatchRegionP0A910225 faldo:begin ?templateMotifSequenceMatchBeginP0A910226 . ?templateMotifSequenceMatchBeginP0A910226 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910221 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A910227 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842231 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_00842222 . ?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842230 . ?targetMotifMatchRegionMatchBeginMF_00842230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842223 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00842231 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842220, 1, (STRLEN(?templateMotifCigarP0A910MF_00842220) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842220, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionP0A910221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842222, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842222) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842222, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842222) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) . BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_00842223) - 1) AS ?thisPositionOn63) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842220, 1, (STRLEN(?templateMotifCigarP0A910MF_00842220) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842220, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP0A910221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842222, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842222) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842222, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842222) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) . BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_00842223) - 1) AS ?thisPositionOn64) . BIND(?this AS ?pfs2t236) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse62) . FILTER ((BOUND(?thisPositionOn63) && BOUND(?thisPositionOn64))) . BIND(URI(CONCAT(STR(?this), '#MF_00842a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionP0A910242 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910244 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_00842237 . ?templateMotifSequenceMatchRegionP0A910242 faldo:begin ?templateMotifSequenceMatchBeginP0A910243 . ?templateMotifSequenceMatchBeginP0A910243 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910238 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A910244 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842248 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_00842239 . ?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842247 . ?targetMotifMatchRegionMatchBeginMF_00842247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842240 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00842248 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842237, 1, (STRLEN(?templateMotifCigarP0A910MF_00842237) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842237, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP0A910238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842239, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842239) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842239, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842239) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) . BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_00842240) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs2t251) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00842a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionP0A910257 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910259 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A910MF_00842252 . ?templateMotifSequenceMatchRegionP0A910257 faldo:begin ?templateMotifSequenceMatchBeginP0A910258 . ?templateMotifSequenceMatchBeginP0A910258 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910253 ; faldo:reference isoform:P0A910-1 . ?templateMotifSequenceProfileAlignmentOperationP0A910259 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . ?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842263 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A910MF_00842254 . ?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842262 . ?targetMotifMatchRegionMatchBeginMF_00842262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842255 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00842263 edam:has_input signature:MF_00842 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842252, 1, (STRLEN(?templateMotifCigarP0A910MF_00842252) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842252, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP0A910253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842254, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842254) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842254, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842254) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) . BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_00842255) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs2t266) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00842a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag267) . } BIND(IF(BOUND(?tagDisulfide), ?caseWithTag267, ?UNBOUND_VARIABLE) AS ?case9) . OPTIONAL { ?this a up:Protein . VALUES ?supertaxon268 {taxon:561 taxon:620 taxon:590 taxon:570 taxon:551} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon268 . BIND(?this AS ?case10) . } OPTIONAL { ?this up:annotation ?samsignal269 ; up:sequence ?thisSequence . ?samsignal269 up:range ?samsignalr270 ; rdf:type up:Signal_Peptide_Annotation . ?samsignalr270 faldo:begin ?samsignalb271 ; faldo:end ?samsignale272 . ?samsignalb271 faldo:position ?samsignalbp273 ; faldo:reference ?thisSequence . ?samsignale272 faldo:position ?samsignalep274 ; faldo:reference ?thisSequence . BIND(?this AS ?sam77) . } BIND(URI(CONCAT(STR(?this), '#MF_00842a83')) AS ?keyword83) . }