@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:312555 up:source unirule:MF_00874 . _:312556 up:source unirule:MF_00874 . _:312557 up:source unirule:MF_00874 . _:312558 up:source unirule:MF_00874 . _:312559 up:source unirule:MF_00874 . _:312560 up:source unirule:MF_00874 . _:312561 up:source unirule:MF_00874 . _:312562 up:source unirule:MF_00874 . _:312563 up:source unirule:MF_00874 . _:312564 up:source unirule:MF_00874 . _:312565 up:source unirule:MF_00874 . _:312566 up:source unirule:MF_00874 . _:312567 up:source unirule:MF_00874 . _:312568 up:source unirule:MF_00874 . _:312569 up:source unirule:MF_00874 . _:312570 up:source unirule:MF_00874 . _:312571 up:source unirule:MF_00874 . _:312572 up:source unirule:MF_00874 . _:312573 up:source unirule:MF_00874 . _:312574 up:source unirule:MF_00874 . _:312575 up:source unirule:MF_00874 . _:312576 up:source unirule:MF_00874 . _:312577 up:source unirule:MF_00874 . _:312578 up:source unirule:MF_00874 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation4 , ?annotation6 ; up:classifiedWith GO:0005737 , GO:0006412 , keyword:687 , keyword:689 , keyword:694 , keyword:699 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:fullName 'Small ribosomal subunit protein aS34' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'rps34a' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Component of the small ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. Binds 16S (small) rRNA.' . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'Component of the 30S small ribosomal subunit.' . ?annotation4 a up:Subcellular_Location_Annotation . ?annotation4li5 up:cellularComponent . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the archaeal ribosomal protein aS34 family.' . ?case7 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 . ?pfs10 up:annotation ?annotation11 , ?annotation17 , ?annotation23 , ?annotation29 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:29105 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:29105 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:29105 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:29105 . ?pfs35 up:annotation ?annotation36 , ?annotation42 , ?annotation48 , ?annotation54 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:29105 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; up:ligand ?ligand45 ; rdf:type up:Binding_Site_Annotation . ?pfsb43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand45 rdfs:subClassOf chebi:29105 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:29105 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; up:ligand ?ligand57 ; rdf:type up:Binding_Site_Annotation . ?pfsb55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?ligand57 rdfs:subClassOf chebi:29105 . _:312579 a rdf:Statement ; up:attribution _:312555 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:312580 a rdf:Statement ; up:attribution _:312556 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:312581 a rdf:Statement ; up:attribution _:312557 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:312582 a rdf:Statement ; up:attribution _:312558 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:312583 a rdf:Statement ; up:attribution _:312559 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:312584 a rdf:Statement ; up:attribution _:312560 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:312585 a rdf:Statement ; up:attribution _:312561 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:312586 a rdf:Statement ; up:attribution _:312562 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:312587 a rdf:Statement ; up:attribution _:312563 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:687 . _:312588 a rdf:Statement ; up:attribution _:312564 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:689 . _:312589 a rdf:Statement ; up:attribution _:312565 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:699 . _:312590 a rdf:Statement ; up:attribution _:312566 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:312591 a rdf:Statement ; up:attribution _:312567 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006412 . _:312592 a rdf:Statement ; up:attribution _:312568 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:312593 a rdf:Statement ; up:attribution _:312569 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:312594 a rdf:Statement ; up:attribution _:312570 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:312595 a rdf:Statement ; up:source unirule:MF_00874 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:312596 a rdf:Statement ; up:attribution _:312571 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:312597 a rdf:Statement ; up:source unirule:MF_00874 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:312598 a rdf:Statement ; up:attribution _:312572 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:312599 a rdf:Statement ; up:source unirule:MF_00874 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:312600 a rdf:Statement ; up:attribution _:312573 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:312601 a rdf:Statement ; up:source unirule:MF_00874 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:312602 a rdf:Statement ; up:attribution _:312574 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:312603 a rdf:Statement ; up:source unirule:MF_00874 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:312604 a rdf:Statement ; up:attribution _:312575 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:312605 a rdf:Statement ; up:source unirule:MF_00874 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:312606 a rdf:Statement ; up:attribution _:312576 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:312607 a rdf:Statement ; up:source unirule:MF_00874 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:312608 a rdf:Statement ; up:attribution _:312577 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:312609 a rdf:Statement ; up:source unirule:MF_00874 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:312610 a rdf:Statement ; up:attribution _:312578 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00874 #Rule MF_00874 Created by:? on:2025-10-15 Modified by:Catherine Rivoire on:2025-10-16 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00874 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_00874a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00874a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00874a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00874a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00874a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionQ97ZK465 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZK467 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ97ZK4MF_0087460 . ?templateMotifSequenceMatchRegionQ97ZK465 faldo:begin ?templateMotifSequenceMatchBeginQ97ZK466 . ?templateMotifSequenceMatchBeginQ97ZK466 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZK461 ; faldo:reference isoform:Q97ZK4-1 . ?templateMotifSequenceProfileAlignmentOperationQ97ZK467 edam:has_input signature:MF_00874 ; rdf:type edam:operation_0300 . ?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0087471 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ97ZK4MF_0087462 . ?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0087470 . ?targetMotifMatchRegionMatchBeginMF_0087470 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0087463 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0087471 edam:has_input signature:MF_00874 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087460, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087460) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087460, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionQ97ZK461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) . BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0087463) - 1) AS ?thisPositionOn15) . BIND(?thisPositionOn15 AS ?thisPositionOn16) . BIND(?this AS ?pfs1t74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087460, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087460) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087460, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionQ97ZK461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) . BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0087463) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER (REGEX('[CH]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087460, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087460) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087460, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionQ97ZK461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) . BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0087463) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs1t80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087460, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087460) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087460, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ97ZK461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) . BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0087463) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER (REGEX('[CDE]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionQ97ZK489 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZK491 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ97ZK4MF_0087484 . ?templateMotifSequenceMatchRegionQ97ZK489 faldo:begin ?templateMotifSequenceMatchBeginQ97ZK490 . ?templateMotifSequenceMatchBeginQ97ZK490 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZK485 ; faldo:reference isoform:Q97ZK4-1 . ?templateMotifSequenceProfileAlignmentOperationQ97ZK491 edam:has_input signature:MF_00874 ; rdf:type edam:operation_0300 . ?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0087495 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ97ZK4MF_0087486 . ?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0087494 . ?targetMotifMatchRegionMatchBeginMF_0087494 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0087487 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0087495 edam:has_input signature:MF_00874 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_2) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087484, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087484) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087484, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionQ97ZK485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0087487) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs2t98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087484, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087484) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087484, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionQ97ZK485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0087487) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs2t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) . FILTER (REGEX('[CD]', SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087484, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087484) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087484, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionQ97ZK485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0087487) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs2t104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087484, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087484) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087484, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionQ97ZK485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0087487) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs2t107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'C')) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag108) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag108, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag109) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag109, ?UNBOUND_VARIABLE) AS ?case8) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag110) . } BIND(IF((BOUND(?tagFTGRP_2) || BOUND(?tagFTGRP_1)), ?caseWithTag110, ?UNBOUND_VARIABLE) AS ?case9) . } """ . .