@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:338976 up:source unirule:MF_00972 . _:338977 up:source unirule:MF_00972 . _:338978 up:source unirule:MF_00972 . _:338979 up:source unirule:MF_00972 . _:338980 up:source unirule:MF_00972 . _:338981 up:source unirule:MF_00972 . _:338982 up:source unirule:MF_00972 . _:338983 up:source unirule:MF_00972 . _:338984 up:source unirule:MF_00972 . _:338985 up:source unirule:MF_00972 . _:338986 up:source unirule:MF_00972 . _:338987 up:source unirule:MF_00972 . _:338988 up:source unirule:MF_00972 . _:338989 up:source unirule:MF_00972 . _:338990 up:source unirule:MF_00972 . _:338991 up:source unirule:MF_00972 . _:338992 up:source unirule:MF_00972 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0002100 , GO:0052717 , keyword:378 , keyword:819 ; up:recommendedName ?name0 . ?name0 up:ecName '3.5.4.33' ; up:fullName 'tRNA-specific adenosine deaminase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'tadA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2).' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity ; up:enzymeClass . ?annotation5 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the cytidine and deoxycytidylate deaminase family.' . ?case7 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 . ?pfs8 up:annotation ?annotation9 , ?annotation15 , ?annotation21 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:29105 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:29105 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:29105 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . _:338993 a rdf:Statement ; up:attribution _:338976 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:338994 a rdf:Statement ; up:attribution _:338977 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:338995 a rdf:Statement ; up:attribution _:338978 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:338996 a rdf:Statement ; up:attribution _:338979 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:338997 a rdf:Statement ; up:attribution _:338980 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:338998 a rdf:Statement ; up:attribution _:338981 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:338999 a rdf:Statement ; up:attribution _:338982 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:339000 a rdf:Statement ; up:attribution _:338983 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:339001 a rdf:Statement ; up:attribution _:338984 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0052717 . _:339002 a rdf:Statement ; up:attribution _:338985 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002100 . _:339003 a rdf:Statement ; up:attribution _:338986 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:339004 a rdf:Statement ; up:attribution _:338987 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:339005 a rdf:Statement ; up:attribution _:338988 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:339006 a rdf:Statement ; up:source unirule:MF_00972 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:339007 a rdf:Statement ; up:attribution _:338989 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:339008 a rdf:Statement ; up:source unirule:MF_00972 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:339009 a rdf:Statement ; up:attribution _:338990 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:339010 a rdf:Statement ; up:source unirule:MF_00972 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:339011 a rdf:Statement ; up:attribution _:338991 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:339012 a rdf:Statement ; up:source unirule:MF_00972 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:339013 a rdf:Statement ; up:attribution _:338992 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00972 #Rule MF_00972 Created by:? on:2013-08-20 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00972 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00972a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00972a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00972a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00972a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00972a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionP6839838 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6839840 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP68398MF_0097233 . ?templateMotifSequenceMatchRegionP6839838 faldo:begin ?templateMotifSequenceMatchBeginP6839839 . ?templateMotifSequenceMatchBeginP6839839 faldo:position ?templateMotifSequenceMatchBeginPositionP6839834 ; faldo:reference isoform:P68398-1 . ?templateMotifSequenceProfileAlignmentOperationP6839840 edam:has_input signature:MF_00972 ; rdf:type edam:operation_0300 . ?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0097244 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP68398MF_0097235 . ?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0097243 . ?targetMotifMatchRegionMatchBeginMF_0097243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0097236 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0097244 edam:has_input signature:MF_00972 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68398MF_0097233, 1, (STRLEN(?templateMotifCigarP68398MF_0097233) - STRLEN(REPLACE(?templateMotifCigarP68398MF_0097233, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP6839834) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) . BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0097236) - 1) AS ?thisPositionOn13) . BIND(?thisPositionOn13 AS ?thisPositionOn14) . BIND(?this AS ?pfs1t47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68398MF_0097233, 1, (STRLEN(?templateMotifCigarP68398MF_0097233) - STRLEN(REPLACE(?templateMotifCigarP68398MF_0097233, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP6839834) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) . BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0097236) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68398MF_0097233, 1, (STRLEN(?templateMotifCigarP68398MF_0097233) - STRLEN(REPLACE(?templateMotifCigarP68398MF_0097233, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP6839834) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) . BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0097236) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionP6839859 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6839861 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP68398MF_0097254 . ?templateMotifSequenceMatchRegionP6839859 faldo:begin ?templateMotifSequenceMatchBeginP6839860 . ?templateMotifSequenceMatchBeginP6839860 faldo:position ?templateMotifSequenceMatchBeginPositionP6839855 ; faldo:reference isoform:P68398-1 . ?templateMotifSequenceProfileAlignmentOperationP6839861 edam:has_input signature:MF_00972 ; rdf:type edam:operation_0300 . ?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0097265 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP68398MF_0097256 . ?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0097264 . ?targetMotifMatchRegionMatchBeginMF_0097264 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0097257 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0097265 edam:has_input signature:MF_00972 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68398MF_0097254, 1, (STRLEN(?templateMotifCigarP68398MF_0097254) - STRLEN(REPLACE(?templateMotifCigarP68398MF_0097254, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP6839855) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68398MF_0097256, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097256) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68398MF_0097256, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097256) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) . BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0097257) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs2t68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00972a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag69) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag69, ?UNBOUND_VARIABLE) AS ?case7) . } """ . .