@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:377568 up:source unirule:MF_01084 . _:377569 up:source unirule:MF_01084 . _:377570 up:source unirule:MF_01084 . _:377571 up:source unirule:MF_01084 . _:377572 up:source unirule:MF_01084 . _:377573 up:source unirule:MF_01084 . _:377574 up:source unirule:MF_01084 . _:377575 up:source unirule:MF_01084 . _:377576 up:source unirule:MF_01084 . _:377577 up:source unirule:MF_01084 . _:377578 up:source unirule:MF_01084 . _:377579 up:source unirule:MF_01084 . _:377580 up:source unirule:MF_01084 . _:377581 up:source unirule:MF_01084 . _:377582 up:source unirule:MF_01084 . _:377583 up:source unirule:MF_01084 . _:377584 up:source unirule:MF_01084 . _:377585 up:source unirule:MF_01084 . _:377586 up:source unirule:MF_01084 . _:377587 up:source unirule:MF_01084 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0004164 , GO:0017183 , keyword:489 , keyword:808 , keyword:949 ; up:recommendedName ?name0 . ?name0 up:ecName '2.1.1.98' ; up:fullName 'Diphthine synthase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Diphthamide biosynthesis methyltransferase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'dphB' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity ; up:enzymeClass . ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Protein modification; peptidyl-diphthamide biosynthesis.' . ?annotation7 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the diphthine synthase family.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:59789 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:59789 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:59789 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:59789 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:59789 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:59789 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:59789 . _:377588 a rdf:Statement ; up:attribution _:377568 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:377589 a rdf:Statement ; up:attribution _:377569 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:377590 a rdf:Statement ; up:attribution _:377570 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:377591 a rdf:Statement ; up:attribution _:377571 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:377592 a rdf:Statement ; up:attribution _:377572 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:377593 a rdf:Statement ; up:attribution _:377573 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:377594 a rdf:Statement ; up:attribution _:377574 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:377595 a rdf:Statement ; up:attribution _:377575 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:377596 a rdf:Statement ; up:attribution _:377576 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:377597 a rdf:Statement ; up:attribution _:377577 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:489 . _:377598 a rdf:Statement ; up:attribution _:377578 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:377599 a rdf:Statement ; up:attribution _:377579 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004164 . _:377600 a rdf:Statement ; up:attribution _:377580 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0017183 . _:377601 a rdf:Statement ; up:source unirule:MF_01084 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:377602 a rdf:Statement ; up:attribution _:377581 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:377603 a rdf:Statement ; up:source unirule:MF_01084 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:377604 a rdf:Statement ; up:attribution _:377582 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:377605 a rdf:Statement ; up:source unirule:MF_01084 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:377606 a rdf:Statement ; up:attribution _:377583 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:377607 a rdf:Statement ; up:source unirule:MF_01084 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:377608 a rdf:Statement ; up:attribution _:377584 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:377609 a rdf:Statement ; up:source unirule:MF_01084 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:377610 a rdf:Statement ; up:attribution _:377585 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:377611 a rdf:Statement ; up:source unirule:MF_01084 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:377612 a rdf:Statement ; up:attribution _:377586 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:377613 a rdf:Statement ; up:source unirule:MF_01084 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:377614 a rdf:Statement ; up:attribution _:377587 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01084 #Rule MF_01084 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01084 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_01084a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01084a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01084a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01084a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01084a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01084a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01084a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionO5845663 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5845665 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58456MF_0108458 . ?templateMotifSequenceMatchRegionO5845663 faldo:begin ?templateMotifSequenceMatchBeginO5845664 . ?templateMotifSequenceMatchBeginO5845664 faldo:position ?templateMotifSequenceMatchBeginPositionO5845659 ; faldo:reference isoform:O58456-1 . ?templateMotifSequenceProfileAlignmentOperationO5845665 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . ?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0108469 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58456MF_0108460 . ?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0108468 . ?targetMotifMatchRegionMatchBeginMF_0108468 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108461 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0108469 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_0108458, 1, (STRLEN(?templateMotifCigarO58456MF_0108458) - STRLEN(REPLACE(?templateMotifCigarO58456MF_0108458, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionO5845659) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_0108460, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108460) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_0108460, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108460) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) . BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0108461) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_0108458, 1, (STRLEN(?templateMotifCigarO58456MF_0108458) - STRLEN(REPLACE(?templateMotifCigarO58456MF_0108458, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionO5845659) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_0108460, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108460) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_0108460, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108460) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) . BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0108461) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER (REGEX('[STN][IGVA]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) . BIND(URI(CONCAT(STR(?this), '#MF_01084a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionO5845680 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5845682 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58456MF_0108475 . ?templateMotifSequenceMatchRegionO5845680 faldo:begin ?templateMotifSequenceMatchBeginO5845681 . ?templateMotifSequenceMatchBeginO5845681 faldo:position ?templateMotifSequenceMatchBeginPositionO5845676 ; faldo:reference isoform:O58456-1 . ?templateMotifSequenceProfileAlignmentOperationO5845682 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . ?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0108486 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58456MF_0108477 . ?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0108485 . ?targetMotifMatchRegionMatchBeginMF_0108485 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108478 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0108486 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_0108475, 1, (STRLEN(?templateMotifCigarO58456MF_0108475) - STRLEN(REPLACE(?templateMotifCigarO58456MF_0108475, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionO5845676) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_0108477, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108477) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_0108477, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108477) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) . BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0108478) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER (REGEX('[LI]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01084a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionO5845695 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5845697 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58456MF_0108490 . ?templateMotifSequenceMatchRegionO5845695 faldo:begin ?templateMotifSequenceMatchBeginO5845696 . ?templateMotifSequenceMatchBeginO5845696 faldo:position ?templateMotifSequenceMatchBeginPositionO5845691 ; faldo:reference isoform:O58456-1 . ?templateMotifSequenceProfileAlignmentOperationO5845697 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . ?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01084101 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58456MF_0108492 . ?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01084100 . ?targetMotifMatchRegionMatchBeginMF_01084100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108493 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01084101 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_0108490, 1, (STRLEN(?templateMotifCigarO58456MF_0108490) - STRLEN(REPLACE(?templateMotifCigarO58456MF_0108490, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionO5845691) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_0108492, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108492) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_0108492, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108492) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0108493) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01084a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionO58456110 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58456112 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58456MF_01084105 . ?templateMotifSequenceMatchRegionO58456110 faldo:begin ?templateMotifSequenceMatchBeginO58456111 . ?templateMotifSequenceMatchBeginO58456111 faldo:position ?templateMotifSequenceMatchBeginPositionO58456106 ; faldo:reference isoform:O58456-1 . ?templateMotifSequenceProfileAlignmentOperationO58456112 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . ?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01084116 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58456MF_01084107 . ?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01084115 . ?targetMotifMatchRegionMatchBeginMF_01084115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01084108 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01084116 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_01084105, 1, (STRLEN(?templateMotifCigarO58456MF_01084105) - STRLEN(REPLACE(?templateMotifCigarO58456MF_01084105, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionO58456106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_01084107, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084107) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_01084107, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084107) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01084108) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t119) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER (REGEX('[VALMTIG]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01084a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionO58456125 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58456127 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58456MF_01084120 . ?templateMotifSequenceMatchRegionO58456125 faldo:begin ?templateMotifSequenceMatchBeginO58456126 . ?templateMotifSequenceMatchBeginO58456126 faldo:position ?templateMotifSequenceMatchBeginPositionO58456121 ; faldo:reference isoform:O58456-1 . ?templateMotifSequenceProfileAlignmentOperationO58456127 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . ?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01084131 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58456MF_01084122 . ?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01084130 . ?targetMotifMatchRegionMatchBeginMF_01084130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01084123 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01084131 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_01084120, 1, (STRLEN(?templateMotifCigarO58456MF_01084120) - STRLEN(REPLACE(?templateMotifCigarO58456MF_01084120, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionO58456121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_01084122, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084122) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_01084122, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084122) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01084123) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER (REGEX('[LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01084a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionO58456140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58456142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58456MF_01084135 . ?templateMotifSequenceMatchRegionO58456140 faldo:begin ?templateMotifSequenceMatchBeginO58456141 . ?templateMotifSequenceMatchBeginO58456141 faldo:position ?templateMotifSequenceMatchBeginPositionO58456136 ; faldo:reference isoform:O58456-1 . ?templateMotifSequenceProfileAlignmentOperationO58456142 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01084146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58456MF_01084137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01084145 . ?targetMotifMatchRegionMatchBeginMF_01084145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01084138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01084146 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_01084135, 1, (STRLEN(?templateMotifCigarO58456MF_01084135) - STRLEN(REPLACE(?templateMotifCigarO58456MF_01084135, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionO58456136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_01084137, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084137) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_01084137, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084137) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01084138) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t149) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER (REGEX('[ALVM]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01084a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionO58456155 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58456157 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58456MF_01084150 . ?templateMotifSequenceMatchRegionO58456155 faldo:begin ?templateMotifSequenceMatchBeginO58456156 . ?templateMotifSequenceMatchBeginO58456156 faldo:position ?templateMotifSequenceMatchBeginPositionO58456151 ; faldo:reference isoform:O58456-1 . ?templateMotifSequenceProfileAlignmentOperationO58456157 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . ?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01084161 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58456MF_01084152 . ?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01084160 . ?targetMotifMatchRegionMatchBeginMF_01084160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01084153 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01084161 edam:has_input signature:MF_01084 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_01084150, 1, (STRLEN(?templateMotifCigarO58456MF_01084150) - STRLEN(REPLACE(?templateMotifCigarO58456MF_01084150, CONCAT('^(?:-*[^-]){', STR(((234 - ?templateMotifSequenceMatchBeginPositionO58456151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_01084152, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084152) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_01084152, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084152) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) . BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01084153) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t164) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER (REGEX('[HYQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01084a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } } """ . .