CONSTRUCT { _:377709 up:source unirule:MF_01106 . _:377710 up:ecName '2.3.1.35' ; up:fullName 'Glutamate N-acetyltransferase' ; rdf:type up:Structured_Name . _:377711 up:fullName 'Ornithine acetyltransferase' ; up:shortName 'OATase' ; rdf:type up:Structured_Name . _:377712 up:fullName 'Ornithine transacetylase' ; rdf:type up:Structured_Name . _:377713 up:source unirule:MF_01106 . _:377714 up:ecName '2.3.1.1' ; up:fullName 'Amino-acid acetyltransferase' ; rdf:type up:Structured_Name . _:377715 up:fullName 'N-acetylglutamate synthase' ; up:shortName 'AGSase' ; rdf:type up:Structured_Name . _:377716 up:source unirule:MF_01106 . _:377717 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' ; rdf:type up:Structured_Name . _:377718 up:source unirule:MF_01106 . _:377719 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ beta chain' ; rdf:type up:Structured_Name . _:377720 up:source unirule:MF_01106 . _:377721 up:source unirule:MF_01106 . _:377722 up:source unirule:MF_01106 . _:377723 up:source unirule:MF_01106 . _:377724 up:source unirule:MF_01106 . _:377725 up:source unirule:MF_01106 . _:377726 up:source unirule:MF_01106 . _:377727 up:source unirule:MF_01106 . _:377728 up:source unirule:MF_01106 . _:377729 up:source unirule:MF_01106 . _:377730 up:source unirule:MF_01106 . _:377731 up:source unirule:MF_01106 . _:377732 up:source unirule:MF_01106 . _:377733 up:source unirule:MF_01106 . _:377734 up:source unirule:MF_01106 . _:377735 up:source unirule:MF_01106 . _:377736 up:source unirule:MF_01106 . _:377737 up:source unirule:MF_01106 . _:377738 up:source unirule:MF_01106 . _:377739 up:source unirule:MF_01106 . _:377740 up:source unirule:MF_01106 . _:377741 up:source unirule:MF_01106 . _:377742 up:source unirule:MF_01106 . _:377743 up:source unirule:MF_01106 . _:377744 up:source unirule:MF_01106 . _:377745 up:source unirule:MF_01106 . _:377746 up:source unirule:MF_01106 . _:377747 up:source unirule:MF_01106 . _:377748 up:source unirule:MF_01106 . _:377749 up:source unirule:MF_01106 . _:377750 up:source unirule:MF_01106 . _:377751 up:source unirule:MF_01106 . _:377752 up:source unirule:MF_01106 . _:377753 up:source unirule:MF_01106 . ?this up:annotation ?annotation6 , ?annotation7 , ?annotation9 , ?annotation11 , ?annotation12 , ?annotation13 , ?annotation14 , ?annotation16 , ?annotation17 ; up:classifiedWith GO:0004042 , GO:0004358 , GO:0005737 , GO:0006526 , keyword:12 , keyword:28 , keyword:511 , keyword:55 , keyword:68 , keyword:808 , keyword:963 ; up:component ?namedpart3 , ?namedpart4 ; up:domain ?namedpart1 , ?namedpart2 ; up:recommendedName ?name0 . ?name0 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ' ; rdf:type up:Structured_Name . ?namedpart1 up:alternativeName _:377711 , _:377712 ; up:recommendedName _:377710 . ?namedpart2 up:alternativeName _:377715 ; up:recommendedName _:377714 . ?namedpart3 up:recommendedName _:377717 . ?namedpart4 up:recommendedName _:377719 . ?gene5 skos:prefLabel 'argJ' . ?annotation6 a up:Function_Annotation ; rdfs:comment 'Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate.' . ?annotation7 up:activity ?activity8 ; rdf:type up:Catalytic_Activity_Annotation . ?activity8 up:catalyticActivity <http://rdf.rhea-db.org/15349>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.3.1.35>. ?annotation9 up:activity ?activity10 ; rdf:type up:Catalytic_Activity_Annotation . ?activity10 up:catalyticActivity <http://rdf.rhea-db.org/24292>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.3.1.1>. ?annotation11 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine and N-acetyl-L-glutamate from L-glutamate and N(2)-acetyl-L-ornithine (cyclic): step 1/1.' . ?annotation12 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4.' . ?annotation13 a up:Subunit_Annotation ; rdfs:comment 'Heterotetramer of two alpha and two beta chains.' . ?annotation14 a up:Subcellular_Location_Annotation . ?annotation14li15 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation16 a up:Annotation ; rdfs:comment 'Some bacteria possess a monofunctional ArgJ, i.e., capable of catalyzing only the fifth step of the arginine biosynthetic pathway.' . ?annotation17 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the ArgJ family.' . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' . ?pfsb20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Arginine biosynthesis bifunctional protein ArgJ beta chain' . ?pfsb26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf ?molecule41 . ?molecule41 rdfs:label 'substrate' . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf ?molecule49 . ?molecule49 rdfs:label 'substrate' . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf ?molecule57 . ?molecule57 rdfs:label 'substrate' . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; up:ligand ?ligand64 ; rdf:type up:Binding_Site_Annotation . ?pfsb62 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand64 rdfs:subClassOf ?molecule65 . ?molecule65 rdfs:label 'substrate' . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf ?molecule73 . ?molecule73 rdfs:label 'substrate' . ?pfs76 up:annotation ?annotation77 . ?annotation77 faldo:begin ?pfsb78 ; faldo:end ?pfse79 ; up:ligand ?ligand80 ; rdf:type up:Binding_Site_Annotation . ?pfsb78 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse79 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?ligand80 rdfs:subClassOf ?molecule81 . ?molecule81 rdfs:label 'substrate' . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; rdf:type up:Site_Annotation ; rdfs:comment 'Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole' . ?pfsb86 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?pfs90 up:annotation ?annotation91 . ?annotation91 faldo:begin ?pfsb92 ; faldo:end ?pfse93 ; rdf:type up:Site_Annotation ; rdfs:comment 'Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole' . ?pfsb92 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?pfse93 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?pfs96 up:annotation ?annotation97 . ?annotation97 faldo:begin ?pfsb98 ; faldo:end ?pfse99 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by autolysis' . ?pfsb98 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?pfse99 faldo:position ?thisPositionOn101 ; rdf:type faldo:ExactPosition . _:377754 a rdf:Statement ; up:attribution _:377709 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:377755 a rdf:Statement ; up:attribution _:377713 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart1 . _:377756 a rdf:Statement ; up:attribution _:377716 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart2 . _:377757 a rdf:Statement ; up:attribution _:377718 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart3 . _:377758 a rdf:Statement ; up:attribution _:377720 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart4 . _:377759 a rdf:Statement ; up:attribution _:377721 ; rdf:subject ?gene5 ; rdf:predicate up:encodedBy ; rdf:object ?gene5 . _:377760 a rdf:Statement ; up:attribution _:377722 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:377761 a rdf:Statement ; up:attribution _:377723 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:377762 a rdf:Statement ; up:attribution _:377724 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:377763 a rdf:Statement ; up:attribution _:377725 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:377764 a rdf:Statement ; up:attribution _:377726 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:377765 a rdf:Statement ; up:attribution _:377727 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:377766 a rdf:Statement ; up:attribution _:377728 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:377767 a rdf:Statement ; up:attribution _:377729 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:377768 a rdf:Statement ; up:attribution _:377730 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:377769 a rdf:Statement ; up:attribution _:377731 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:377770 a rdf:Statement ; up:attribution _:377732 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:377771 a rdf:Statement ; up:attribution _:377733 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:55 . _:377772 a rdf:Statement ; up:attribution _:377734 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:68 . _:377773 a rdf:Statement ; up:attribution _:377735 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:511 . _:377774 a rdf:Statement ; up:attribution _:377736 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:377775 a rdf:Statement ; up:attribution _:377737 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:12 . _:377776 a rdf:Statement ; up:attribution _:377738 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004042 . _:377777 a rdf:Statement ; up:attribution _:377739 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004358 . _:377778 a rdf:Statement ; up:attribution _:377740 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006526 . _:377779 a rdf:Statement ; up:attribution _:377741 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:377780 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:377781 a rdf:Statement ; up:attribution _:377742 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:377782 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:377783 a rdf:Statement ; up:attribution _:377743 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:377784 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:377785 a rdf:Statement ; up:attribution _:377744 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:377786 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:377787 a rdf:Statement ; up:attribution _:377745 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:377788 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:377789 a rdf:Statement ; up:attribution _:377746 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:377790 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:377791 a rdf:Statement ; up:attribution _:377747 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:377792 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:377793 a rdf:Statement ; up:attribution _:377748 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:377794 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:377795 a rdf:Statement ; up:attribution _:377749 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:377796 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:377797 a rdf:Statement ; up:attribution _:377750 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:377798 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:377799 a rdf:Statement ; up:attribution _:377751 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:377800 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:377801 a rdf:Statement ; up:attribution _:377752 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:377802 a rdf:Statement ; up:source unirule:MF_01106 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:377803 a rdf:Statement ; up:attribution _:377753 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01106 #Rule MF_01106 Created by:tlima on:2003-03-28 Modified by:ecastro on:2023-06-01 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01106 . ?thisOrganism rdfs:subClassOf+ taxon:2 . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01106 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . } BIND(URI(CONCAT(STR(?this), '#MF_01106a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01106a1')) AS ?namedpart1) . BIND(URI(CONCAT(STR(?this), '#MF_01106a2')) AS ?namedpart2) . BIND(URI(CONCAT(STR(?this), '#MF_01106a3')) AS ?namedpart3) . BIND(URI(CONCAT(STR(?this), '#MF_01106a4')) AS ?namedpart4) . BIND(URI(CONCAT(STR(?this), '#MF_01106a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01106a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01106a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01106a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_01106a12')) AS ?annotation12) . BIND(URI(CONCAT(STR(?this), '#MF_01106a13')) AS ?annotation13) . BIND(URI(CONCAT(STR(?this), '#MF_01106a14')) AS ?annotation14) . BIND(URI(CONCAT(STR(?this), '#MF_01106a16')) AS ?annotation16) . BIND(URI(CONCAT(STR(?this), '#MF_01106a17')) AS ?annotation17) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3107 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3109 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106102 . ?templateMotifSequenceMatchRegionP9WPZ3107 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3108 . ?templateMotifSequenceMatchBeginP9WPZ3108 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3103 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3109 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106113 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106104 . ?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106112 . ?targetMotifMatchRegionMatchBeginMF_01106112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106105 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106113 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn22) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106102, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106102) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106102, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP9WPZ3103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106104, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106104) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106104, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106104) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01106105) - 1) AS ?thisPositionOn23) . BIND(?this AS ?pfs1t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) . FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) . BIND(URI(CONCAT(STR(?this), '#MF_01106a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3122 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3124 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106117 . ?templateMotifSequenceMatchRegionP9WPZ3122 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3123 . ?templateMotifSequenceMatchBeginP9WPZ3123 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3118 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3124 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106128 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106119 . ?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106127 . ?targetMotifMatchRegionMatchBeginMF_01106127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106120 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106128 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106117, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106117) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106117, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106119, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106119) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106119, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106119) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01106120) - 1) AS ?thisPositionOn28) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn29) . BIND(?this AS ?pfs1t131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) . FILTER ((BOUND(?thisPositionOn28) && BOUND(?thisPositionOn29))) . BIND(URI(CONCAT(STR(?this), '#MF_01106a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3137 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3139 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106132 . ?templateMotifSequenceMatchRegionP9WPZ3137 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3138 . ?templateMotifSequenceMatchBeginP9WPZ3138 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3133 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3139 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106143 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106134 . ?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106142 . ?targetMotifMatchRegionMatchBeginMF_01106142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106135 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106143 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106132, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106132) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106132, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106134, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106134) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106134, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106134) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01106135) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs1t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01106a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3152 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3154 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106147 . ?templateMotifSequenceMatchRegionP9WPZ3152 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3153 . ?templateMotifSequenceMatchBeginP9WPZ3153 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3148 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3154 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106158 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106149 . ?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106157 . ?targetMotifMatchRegionMatchBeginMF_01106157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106150 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106158 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106147, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106147) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106147, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP9WPZ3148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106149, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106149) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106149, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106149) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_01106150) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t161) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_01106a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3167 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3169 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106162 . ?templateMotifSequenceMatchRegionP9WPZ3167 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3168 . ?templateMotifSequenceMatchBeginP9WPZ3168 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3163 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3169 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106173 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106164 . ?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106172 . ?targetMotifMatchRegionMatchBeginMF_01106172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106165 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106173 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106162, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106162) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106162, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP9WPZ3163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106164, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106164) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106164, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106164) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01106165) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs1t176) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01106a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3182 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3184 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106177 . ?templateMotifSequenceMatchRegionP9WPZ3182 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3183 . ?templateMotifSequenceMatchBeginP9WPZ3183 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3178 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3184 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106188 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106179 . ?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106187 . ?targetMotifMatchRegionMatchBeginMF_01106187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106180 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106188 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106177, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106177) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106177, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106179, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106179) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106179, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106179) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) . BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01106180) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs1t191) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse55) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01106a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3197 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3199 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106192 . ?templateMotifSequenceMatchRegionP9WPZ3197 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3198 . ?templateMotifSequenceMatchBeginP9WPZ3198 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3193 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3199 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106203 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106194 . ?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106202 . ?targetMotifMatchRegionMatchBeginMF_01106202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106195 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106203 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106192, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106192) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106192, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionP9WPZ3193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106194, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106194) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106194, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106194) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) . BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_01106195) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t206) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse63) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01106a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3212 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3214 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106207 . ?templateMotifSequenceMatchRegionP9WPZ3212 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3213 . ?templateMotifSequenceMatchBeginP9WPZ3213 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3208 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3214 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106218 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106209 . ?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106217 . ?targetMotifMatchRegionMatchBeginMF_01106217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106210 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106218 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106207, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106207) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106207, CONCAT('^(?:-*[^-]){', STR(((399 - ?templateMotifSequenceMatchBeginPositionP9WPZ3208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106209, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106209) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106209, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106209) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) . BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_01106210) - 1) AS ?thisPositionOn74) . BIND(?thisPositionOn74 AS ?thisPositionOn75) . BIND(?this AS ?pfs1t221) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01106a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3227 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3229 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106222 . ?templateMotifSequenceMatchRegionP9WPZ3227 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3228 . ?templateMotifSequenceMatchBeginP9WPZ3228 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3223 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3229 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106233 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106224 . ?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106232 . ?targetMotifMatchRegionMatchBeginMF_01106232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106225 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106233 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106222, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106222) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106222, CONCAT('^(?:-*[^-]){', STR(((404 - ?templateMotifSequenceMatchBeginPositionP9WPZ3223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106224, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106224) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106224, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106224) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) . BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01106225) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs1t236) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb78) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse79) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01106a77')) AS ?annotation77) . BIND(?this AS ?pfs76) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3242 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3244 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106237 . ?templateMotifSequenceMatchRegionP9WPZ3242 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3243 . ?templateMotifSequenceMatchBeginP9WPZ3243 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3238 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3244 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106248 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106239 . ?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106247 . ?targetMotifMatchRegionMatchBeginMF_01106247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106240 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106248 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106237, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106237) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106237, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP9WPZ3238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106239, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106239) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106239, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106239) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) . BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_01106240) - 1) AS ?thisPositionOn88) . BIND(?thisPositionOn88 AS ?thisPositionOn89) . BIND(?this AS ?pfs1t251) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse87) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_01106a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3257 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3259 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106252 . ?templateMotifSequenceMatchRegionP9WPZ3257 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3258 . ?templateMotifSequenceMatchBeginP9WPZ3258 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3253 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3259 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106263 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106254 . ?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106262 . ?targetMotifMatchRegionMatchBeginMF_01106262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106255 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106263 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106252, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106252) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106252, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP9WPZ3253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106254, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106254) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106254, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106254) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) . BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_01106255) - 1) AS ?thisPositionOn94) . BIND(?thisPositionOn94 AS ?thisPositionOn95) . BIND(?this AS ?pfs1t266) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse93) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01106a91')) AS ?annotation91) . BIND(?this AS ?pfs90) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3272 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3274 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106267 . ?templateMotifSequenceMatchRegionP9WPZ3272 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3273 . ?templateMotifSequenceMatchBeginP9WPZ3273 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3268 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3274 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106278 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106269 . ?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106277 . ?targetMotifMatchRegionMatchBeginMF_01106277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106270 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106278 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106267, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106267) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106267, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP9WPZ3268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106269, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106269) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106269, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106269) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) . BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_01106270) - 1) AS ?thisPositionOn100) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106267, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106267) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106267, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1281) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106269, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106269) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1281), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106269, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106269) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1281), '}'), '')))), '[^-]', ''))) AS ?step2282) . BIND(((?step2282 + ?targetMotifMatchRegionMatchBeginPositionMF_01106270) - 1) AS ?thisPositionOn101) . BIND(?this AS ?pfs1t283) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse99) . FILTER (REGEX('[AG][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn100, (?thisPositionOn101 - ?thisPositionOn100)))) . BIND(URI(CONCAT(STR(?this), '#MF_01106a97')) AS ?annotation97) . BIND(?this AS ?pfs96) . } }