CONSTRUCT { _:412836 up:source unirule:MF_01200 . _:412837 up:source unirule:MF_01200 . _:412838 up:source unirule:MF_01200 . _:412839 up:source unirule:MF_01200 . _:412840 up:source unirule:MF_01200 . _:412841 up:source unirule:MF_01200 . _:412842 up:source unirule:MF_01200 . _:412843 up:source unirule:MF_01200 . _:412844 up:source unirule:MF_01200 . _:412845 up:source unirule:MF_01200 . _:412846 up:source unirule:MF_01200 . _:412847 up:source unirule:MF_01200 . _:412848 up:source unirule:MF_01200 . _:412849 up:source unirule:MF_01200 . _:412850 up:source unirule:MF_01200 . _:412851 up:source unirule:MF_01200 . _:412852 up:source unirule:MF_01200 . _:412853 up:source unirule:MF_01200 . _:412854 up:source unirule:MF_01200 . _:412855 up:source unirule:MF_01200 . _:412856 up:source unirule:MF_01200 . _:412857 up:source unirule:MF_01200 . _:412858 up:source unirule:MF_01200 . _:412859 up:source unirule:MF_01200 . _:412860 up:source unirule:MF_01200 . _:412861 up:source unirule:MF_01200 . _:412862 up:source unirule:MF_01200 . _:412863 up:source unirule:MF_01200 . _:412864 up:source unirule:MF_01200 . _:412865 up:source unirule:MF_01200 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0004590 , GO:0006221 , keyword:210 , keyword:456 , keyword:665 ; up:recommendedName ?name0 . ?name0 up:ecName '4.1.1.23' ; up:fullName "Orotidine 5'-phosphate decarboxylase" ; rdf:type up:Structured_Name . ?name1 up:fullName 'OMP decarboxylase' ; up:shortName 'OMPDCase' , 'OMPdecase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'pyrF' . ?annotation3 a up:Function_Annotation ; rdfs:comment "Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP)." . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/11596>; up:enzymeClass <http://purl.uniprot.org/enzyme/4.1.1.23>. ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2.' . ?annotation7 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the OMP decarboxylase family. Type 1 subfamily.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf ?molecule14 . ?molecule14 rdfs:label 'substrate' . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; up:ligand ?ligand21 ; rdf:type up:Binding_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand21 rdfs:subClassOf ?molecule22 . ?molecule22 rdfs:label 'substrate' . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf ?molecule36 . ?molecule36 rdfs:label 'substrate' . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf ?molecule44 . ?molecule44 rdfs:label 'substrate' . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf ?molecule52 . ?molecule52 rdfs:label 'substrate' . ?pfs55 up:annotation ?annotation56 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation . ?pfsb57 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf ?molecule60 . ?molecule60 rdfs:label 'substrate' . ?pfs63 up:annotation ?annotation64 . ?annotation64 faldo:begin ?pfsb65 ; faldo:end ?pfse66 ; up:ligand ?ligand67 ; rdf:type up:Binding_Site_Annotation . ?pfsb65 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse66 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand67 rdfs:subClassOf ?molecule68 . ?molecule68 rdfs:label 'substrate' . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; up:ligand ?ligand75 ; rdf:type up:Binding_Site_Annotation . ?pfsb73 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand75 rdfs:subClassOf ?molecule76 . ?molecule76 rdfs:label 'substrate' . ?pfs79 up:annotation ?annotation80 . ?annotation80 faldo:begin ?pfsb81 ; faldo:end ?pfse82 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb81 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfse82 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfs85 up:annotation ?annotation86 . ?annotation86 faldo:begin ?pfsb87 ; faldo:end ?pfse88 ; up:ligand ?ligand89 ; rdf:type up:Binding_Site_Annotation . ?pfsb87 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse88 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?ligand89 rdfs:subClassOf ?molecule90 . ?molecule90 rdfs:label 'substrate' . ?pfs93 up:annotation ?annotation94 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; up:ligand ?ligand97 ; rdf:type up:Binding_Site_Annotation . ?pfsb95 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?ligand97 rdfs:subClassOf ?molecule98 . ?molecule98 rdfs:label 'substrate' . ?pfs101 up:annotation ?annotation102 . ?annotation102 faldo:begin ?pfsb103 ; faldo:end ?pfse104 ; up:ligand ?ligand105 ; rdf:type up:Binding_Site_Annotation . ?pfsb103 faldo:position ?thisPositionOn107 ; rdf:type faldo:ExactPosition . ?pfse104 faldo:position ?thisPositionOn108 ; rdf:type faldo:ExactPosition . ?ligand105 rdfs:subClassOf ?molecule106 . ?molecule106 rdfs:label 'substrate' . ?pfs109 up:annotation ?annotation110 . ?annotation110 faldo:begin ?pfsb111 ; faldo:end ?pfse112 ; up:ligand ?ligand113 ; rdf:type up:Binding_Site_Annotation . ?pfsb111 faldo:position ?thisPositionOn115 ; rdf:type faldo:ExactPosition . ?pfse112 faldo:position ?thisPositionOn116 ; rdf:type faldo:ExactPosition . ?ligand113 rdfs:subClassOf ?molecule114 . ?molecule114 rdfs:label 'substrate' . ?pfs117 up:annotation ?annotation118 . ?annotation118 faldo:begin ?pfsb119 ; faldo:end ?pfse120 ; up:ligand ?ligand121 ; rdf:type up:Binding_Site_Annotation . ?pfsb119 faldo:position ?thisPositionOn123 ; rdf:type faldo:ExactPosition . ?pfse120 faldo:position ?thisPositionOn124 ; rdf:type faldo:ExactPosition . ?ligand121 rdfs:subClassOf ?molecule122 . ?molecule122 rdfs:label 'substrate' . ?pfs125 up:annotation ?annotation126 . ?annotation126 faldo:begin ?pfsb127 ; faldo:end ?pfse128 ; up:ligand ?ligand129 ; rdf:type up:Binding_Site_Annotation . ?pfsb127 faldo:position ?thisPositionOn131 ; rdf:type faldo:ExactPosition . ?pfse128 faldo:position ?thisPositionOn132 ; rdf:type faldo:ExactPosition . ?ligand129 rdfs:subClassOf ?molecule130 . ?molecule130 rdfs:label 'substrate' . ?pfs133 up:annotation ?annotation134 . ?annotation134 faldo:begin ?pfsb135 ; faldo:end ?pfse136 ; up:ligand ?ligand137 ; rdf:type up:Binding_Site_Annotation . ?pfsb135 faldo:position ?thisPositionOn139 ; rdf:type faldo:ExactPosition . ?pfse136 faldo:position ?thisPositionOn140 ; rdf:type faldo:ExactPosition . ?ligand137 rdfs:subClassOf ?molecule138 . ?molecule138 rdfs:label 'substrate' . _:412866 a rdf:Statement ; up:attribution _:412836 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:412867 a rdf:Statement ; up:attribution _:412837 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:412868 a rdf:Statement ; up:attribution _:412838 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:412869 a rdf:Statement ; up:attribution _:412839 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:412870 a rdf:Statement ; up:attribution _:412840 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:412871 a rdf:Statement ; up:attribution _:412841 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:412872 a rdf:Statement ; up:attribution _:412842 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:412873 a rdf:Statement ; up:attribution _:412843 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:412874 a rdf:Statement ; up:attribution _:412844 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:412875 a rdf:Statement ; up:attribution _:412845 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:210 . _:412876 a rdf:Statement ; up:attribution _:412846 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:665 . _:412877 a rdf:Statement ; up:attribution _:412847 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004590 . _:412878 a rdf:Statement ; up:attribution _:412848 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006221 . _:412879 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:412880 a rdf:Statement ; up:attribution _:412849 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:412881 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:412882 a rdf:Statement ; up:attribution _:412850 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:412883 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:412884 a rdf:Statement ; up:attribution _:412851 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:412885 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:412886 a rdf:Statement ; up:attribution _:412852 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:412887 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:412888 a rdf:Statement ; up:attribution _:412853 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:412889 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:412890 a rdf:Statement ; up:attribution _:412854 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:412891 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:412892 a rdf:Statement ; up:attribution _:412855 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:412893 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:412894 a rdf:Statement ; up:attribution _:412856 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:412895 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:412896 a rdf:Statement ; up:attribution _:412857 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:412897 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:412898 a rdf:Statement ; up:attribution _:412858 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:412899 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:412900 a rdf:Statement ; up:attribution _:412859 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:412901 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:412902 a rdf:Statement ; up:attribution _:412860 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:412903 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:412904 a rdf:Statement ; up:attribution _:412861 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:412905 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs109 ; rdf:predicate up:annotation ; rdf:object ?annotation110 . _:412906 a rdf:Statement ; up:attribution _:412862 ; rdf:subject ?pfs109 ; rdf:predicate up:annotation ; rdf:object ?annotation110 . _:412907 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs117 ; rdf:predicate up:annotation ; rdf:object ?annotation118 . _:412908 a rdf:Statement ; up:attribution _:412863 ; rdf:subject ?pfs117 ; rdf:predicate up:annotation ; rdf:object ?annotation118 . _:412909 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs125 ; rdf:predicate up:annotation ; rdf:object ?annotation126 . _:412910 a rdf:Statement ; up:attribution _:412864 ; rdf:subject ?pfs125 ; rdf:predicate up:annotation ; rdf:object ?annotation126 . _:412911 a rdf:Statement ; up:source unirule:MF_01200 ; rdf:subject ?pfs133 ; rdf:predicate up:annotation ; rdf:object ?annotation134 . _:412912 a rdf:Statement ; up:attribution _:412865 ; rdf:subject ?pfs133 ; rdf:predicate up:annotation ; rdf:object ?annotation134 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01200 #Rule MF_01200 Created by:coudert on:2002-01-15 Modified by:ecastro on:2023-06-01 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01200_B . ?thisOrganism rdfs:subClassOf+ taxon:2 . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01200_A . ?thisOrganism rdfs:subClassOf+ taxon:2157 . } BIND(URI(CONCAT(STR(?this), '#MF_01200a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01200a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01200a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01200a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01200a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01200a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01200a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionO26232146 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232148 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO26232MF_01200_A141 . ?templateMotifSequenceMatchRegionO26232146 faldo:begin ?templateMotifSequenceMatchBeginO26232147 . ?templateMotifSequenceMatchBeginO26232147 faldo:position ?templateMotifSequenceMatchBeginPositionO26232142 ; faldo:reference isoform:O26232-1 . ?templateMotifSequenceProfileAlignmentOperationO26232148 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A152 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO26232MF_01200_A143 . ?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A151 . ?targetMotifMatchRegionMatchBeginMF_01200_A151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A144 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_A152 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A141, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A141) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A141, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionO26232142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A143, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A143) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A143, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A143) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) . BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A144) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A141, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A141) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A141, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionO26232142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A143, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A143) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A143, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A143) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A144) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t157) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse12) . FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) . BIND(URI(CONCAT(STR(?this), '#MF_01200a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionO26232163 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232165 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO26232MF_01200_A158 . ?templateMotifSequenceMatchRegionO26232163 faldo:begin ?templateMotifSequenceMatchBeginO26232164 . ?templateMotifSequenceMatchBeginO26232164 faldo:position ?templateMotifSequenceMatchBeginPositionO26232159 ; faldo:reference isoform:O26232-1 . ?templateMotifSequenceProfileAlignmentOperationO26232165 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A169 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO26232MF_01200_A160 . ?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A168 . ?targetMotifMatchRegionMatchBeginMF_01200_A168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A161 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_A169 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A158, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A158) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A158, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionO26232159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A160, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A160) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A160, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A160) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) . BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A161) - 1) AS ?thisPositionOn23) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A158, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A158) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A158, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionO26232159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A160, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A160) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A160, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A160) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A161) - 1) AS ?thisPositionOn24) . BIND(?this AS ?pfs1t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse20) . FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX]K[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]D[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) . BIND(URI(CONCAT(STR(?this), '#MF_01200a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionO26232180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO26232MF_01200_A175 . ?templateMotifSequenceMatchRegionO26232180 faldo:begin ?templateMotifSequenceMatchBeginO26232181 . ?templateMotifSequenceMatchBeginO26232181 faldo:position ?templateMotifSequenceMatchBeginPositionO26232176 ; faldo:reference isoform:O26232-1 . ?templateMotifSequenceProfileAlignmentOperationO26232182 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO26232MF_01200_A177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A185 . ?targetMotifMatchRegionMatchBeginMF_01200_A185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_A186 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A175, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A175) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A175, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionO26232176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A177, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A177) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A177, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A177) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A178) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t189) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionO26232195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO26232MF_01200_A190 . ?templateMotifSequenceMatchRegionO26232195 faldo:begin ?templateMotifSequenceMatchBeginO26232196 . ?templateMotifSequenceMatchBeginO26232196 faldo:position ?templateMotifSequenceMatchBeginPositionO26232191 ; faldo:reference isoform:O26232-1 . ?templateMotifSequenceProfileAlignmentOperationO26232197 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A201 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO26232MF_01200_A192 . ?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A200 . ?targetMotifMatchRegionMatchBeginMF_01200_A200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A193 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_A201 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A190, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A190) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A190, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionO26232191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A192, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A192) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A192, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A192) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A193) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionO26232210 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232212 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO26232MF_01200_A205 . ?templateMotifSequenceMatchRegionO26232210 faldo:begin ?templateMotifSequenceMatchBeginO26232211 . ?templateMotifSequenceMatchBeginO26232211 faldo:position ?templateMotifSequenceMatchBeginPositionO26232206 ; faldo:reference isoform:O26232-1 . ?templateMotifSequenceProfileAlignmentOperationO26232212 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A216 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO26232MF_01200_A207 . ?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A215 . ?targetMotifMatchRegionMatchBeginMF_01200_A215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A208 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_A216 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A205, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A205) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A205, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionO26232206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A207, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A207) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A207, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A207) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A208) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t219) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionO26232225 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232227 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO26232MF_01200_A220 . ?templateMotifSequenceMatchRegionO26232225 faldo:begin ?templateMotifSequenceMatchBeginO26232226 . ?templateMotifSequenceMatchBeginO26232226 faldo:position ?templateMotifSequenceMatchBeginPositionO26232221 ; faldo:reference isoform:O26232-1 . ?templateMotifSequenceProfileAlignmentOperationO26232227 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A231 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO26232MF_01200_A222 . ?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A230 . ?targetMotifMatchRegionMatchBeginMF_01200_A230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A223 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_A231 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A220, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A220) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A220, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionO26232221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A222, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A222) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A222, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A222) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) . BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A223) - 1) AS ?thisPositionOn53) . BIND(?thisPositionOn53 AS ?thisPositionOn54) . BIND(?this AS ?pfs1t234) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionO26232240 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232242 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO26232MF_01200_A235 . ?templateMotifSequenceMatchRegionO26232240 faldo:begin ?templateMotifSequenceMatchBeginO26232241 . ?templateMotifSequenceMatchBeginO26232241 faldo:position ?templateMotifSequenceMatchBeginPositionO26232236 ; faldo:reference isoform:O26232-1 . ?templateMotifSequenceProfileAlignmentOperationO26232242 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A246 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO26232MF_01200_A237 . ?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A245 . ?targetMotifMatchRegionMatchBeginMF_01200_A245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A238 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_A246 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A235, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A235) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A235, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionO26232236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A237, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A237) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A237, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A237) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) . BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A238) - 1) AS ?thisPositionOn61) . BIND(?thisPositionOn61 AS ?thisPositionOn62) . BIND(?this AS ?pfs1t249) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse58) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a56')) AS ?annotation56) . BIND(?this AS ?pfs55) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionO26232255 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232257 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO26232MF_01200_A250 . ?templateMotifSequenceMatchRegionO26232255 faldo:begin ?templateMotifSequenceMatchBeginO26232256 . ?templateMotifSequenceMatchBeginO26232256 faldo:position ?templateMotifSequenceMatchBeginPositionO26232251 ; faldo:reference isoform:O26232-1 . ?templateMotifSequenceProfileAlignmentOperationO26232257 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A261 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO26232MF_01200_A252 . ?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A260 . ?targetMotifMatchRegionMatchBeginMF_01200_A260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A253 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_A261 edam:has_input signature:MF_01200_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A250, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A250) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A250, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionO26232251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A252, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A252) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A252, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A252) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) . BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A253) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs1t264) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse66) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a64')) AS ?annotation64) . BIND(?this AS ?pfs63) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP08244270 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244272 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08244MF_01200_B265 . ?templateMotifSequenceMatchRegionP08244270 faldo:begin ?templateMotifSequenceMatchBeginP08244271 . ?templateMotifSequenceMatchBeginP08244271 faldo:position ?templateMotifSequenceMatchBeginPositionP08244266 ; faldo:reference isoform:P08244-1 . ?templateMotifSequenceProfileAlignmentOperationP08244272 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B276 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08244MF_01200_B267 . ?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B275 . ?targetMotifMatchRegionMatchBeginMF_01200_B275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B268 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_B276 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B265, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B265) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B265, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP08244266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B267, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B267) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B267, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B267) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) . BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B268) - 1) AS ?thisPositionOn77) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B265, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B265) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B265, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP08244266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B267, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B267) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B267, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B267) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) . BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B268) - 1) AS ?thisPositionOn78) . BIND(?this AS ?pfs2t281) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse74) . FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX]K[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]D[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn77, (?thisPositionOn78 - ?thisPositionOn77)))) . BIND(URI(CONCAT(STR(?this), '#MF_01200a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionP08244287 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244289 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08244MF_01200_B282 . ?templateMotifSequenceMatchRegionP08244287 faldo:begin ?templateMotifSequenceMatchBeginP08244288 . ?templateMotifSequenceMatchBeginP08244288 faldo:position ?templateMotifSequenceMatchBeginPositionP08244283 ; faldo:reference isoform:P08244-1 . ?templateMotifSequenceProfileAlignmentOperationP08244289 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B293 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08244MF_01200_B284 . ?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B292 . ?targetMotifMatchRegionMatchBeginMF_01200_B292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B285 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_B293 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B282, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B282) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B282, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP08244283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B284, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B284) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B284, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B284) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) . BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B285) - 1) AS ?thisPositionOn83) . BIND(?thisPositionOn83 AS ?thisPositionOn84) . BIND(?this AS ?pfs2t296) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse82) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a80')) AS ?annotation80) . BIND(?this AS ?pfs79) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionP08244302 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244304 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08244MF_01200_B297 . ?templateMotifSequenceMatchRegionP08244302 faldo:begin ?templateMotifSequenceMatchBeginP08244303 . ?templateMotifSequenceMatchBeginP08244303 faldo:position ?templateMotifSequenceMatchBeginPositionP08244298 ; faldo:reference isoform:P08244-1 . ?templateMotifSequenceProfileAlignmentOperationP08244304 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B308 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08244MF_01200_B299 . ?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B307 . ?targetMotifMatchRegionMatchBeginMF_01200_B307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B300 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_B308 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B297, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B297) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B297, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP08244298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B299, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B299) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B299, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B299) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) . BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B300) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs2t311) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb87) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse88) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a86')) AS ?annotation86) . BIND(?this AS ?pfs85) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionP08244317 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244319 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08244MF_01200_B312 . ?templateMotifSequenceMatchRegionP08244317 faldo:begin ?templateMotifSequenceMatchBeginP08244318 . ?templateMotifSequenceMatchBeginP08244318 faldo:position ?templateMotifSequenceMatchBeginPositionP08244313 ; faldo:reference isoform:P08244-1 . ?templateMotifSequenceProfileAlignmentOperationP08244319 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B323 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08244MF_01200_B314 . ?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B322 . ?targetMotifMatchRegionMatchBeginMF_01200_B322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B315 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_B323 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B312, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B312) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B312, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP08244313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B314, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B314) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B314, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B314) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) . BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B315) - 1) AS ?thisPositionOn99) . BIND(?thisPositionOn99 AS ?thisPositionOn100) . BIND(?this AS ?pfs2t326) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse96) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a94')) AS ?annotation94) . BIND(?this AS ?pfs93) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionP08244332 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244334 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08244MF_01200_B327 . ?templateMotifSequenceMatchRegionP08244332 faldo:begin ?templateMotifSequenceMatchBeginP08244333 . ?templateMotifSequenceMatchBeginP08244333 faldo:position ?templateMotifSequenceMatchBeginPositionP08244328 ; faldo:reference isoform:P08244-1 . ?templateMotifSequenceProfileAlignmentOperationP08244334 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B338 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08244MF_01200_B329 . ?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B337 . ?targetMotifMatchRegionMatchBeginMF_01200_B337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B330 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_B338 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B327, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B327) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B327, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP08244328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B329, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B329) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B329, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B329) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) . BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B330) - 1) AS ?thisPositionOn107) . BIND(?thisPositionOn107 AS ?thisPositionOn108) . BIND(?this AS ?pfs2t341) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse104) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a102')) AS ?annotation102) . BIND(?this AS ?pfs101) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch346 faldo:location ?templateMotifSequenceMatchRegionP08244347 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244349 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08244MF_01200_B342 . ?templateMotifSequenceMatchRegionP08244347 faldo:begin ?templateMotifSequenceMatchBeginP08244348 . ?templateMotifSequenceMatchBeginP08244348 faldo:position ?templateMotifSequenceMatchBeginPositionP08244343 ; faldo:reference isoform:P08244-1 . ?templateMotifSequenceProfileAlignmentOperationP08244349 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?targetMotifMatch350 faldo:location ?targetMotifMatchRegionMatch351 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B353 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08244MF_01200_B344 . ?targetMotifMatchRegionMatch351 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B352 . ?targetMotifMatchRegionMatchBeginMF_01200_B352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B345 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_B353 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B342, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B342) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B342, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP08244343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1354) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B344, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B344) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B344, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B344) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), '')))), '[^-]', ''))) AS ?step2355) . BIND(((?step2355 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B345) - 1) AS ?thisPositionOn115) . BIND(?thisPositionOn115 AS ?thisPositionOn116) . BIND(?this AS ?pfs2t356) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb111) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse112) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a110')) AS ?annotation110) . BIND(?this AS ?pfs109) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch361 faldo:location ?templateMotifSequenceMatchRegionP08244362 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244364 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08244MF_01200_B357 . ?templateMotifSequenceMatchRegionP08244362 faldo:begin ?templateMotifSequenceMatchBeginP08244363 . ?templateMotifSequenceMatchBeginP08244363 faldo:position ?templateMotifSequenceMatchBeginPositionP08244358 ; faldo:reference isoform:P08244-1 . ?templateMotifSequenceProfileAlignmentOperationP08244364 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?targetMotifMatch365 faldo:location ?targetMotifMatchRegionMatch366 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B368 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08244MF_01200_B359 . ?targetMotifMatchRegionMatch366 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B367 . ?targetMotifMatchRegionMatchBeginMF_01200_B367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B360 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_B368 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B357, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B357) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B357, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP08244358) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1369) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B359, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B359) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B359, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B359) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), '')))), '[^-]', ''))) AS ?step2370) . BIND(((?step2370 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B360) - 1) AS ?thisPositionOn123) . BIND(?thisPositionOn123 AS ?thisPositionOn124) . BIND(?this AS ?pfs2t371) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb119) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse120) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn123, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a118')) AS ?annotation118) . BIND(?this AS ?pfs117) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch376 faldo:location ?templateMotifSequenceMatchRegionP08244377 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244379 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08244MF_01200_B372 . ?templateMotifSequenceMatchRegionP08244377 faldo:begin ?templateMotifSequenceMatchBeginP08244378 . ?templateMotifSequenceMatchBeginP08244378 faldo:position ?templateMotifSequenceMatchBeginPositionP08244373 ; faldo:reference isoform:P08244-1 . ?templateMotifSequenceProfileAlignmentOperationP08244379 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?targetMotifMatch380 faldo:location ?targetMotifMatchRegionMatch381 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B383 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08244MF_01200_B374 . ?targetMotifMatchRegionMatch381 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B382 . ?targetMotifMatchRegionMatchBeginMF_01200_B382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B375 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_B383 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B372, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B372) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B372, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP08244373) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1384) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B374, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B374) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B374, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B374) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), '')))), '[^-]', ''))) AS ?step2385) . BIND(((?step2385 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B375) - 1) AS ?thisPositionOn131) . BIND(?thisPositionOn131 AS ?thisPositionOn132) . BIND(?this AS ?pfs2t386) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb127) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse128) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a126')) AS ?annotation126) . BIND(?this AS ?pfs125) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch391 faldo:location ?templateMotifSequenceMatchRegionP08244392 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244394 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08244MF_01200_B387 . ?templateMotifSequenceMatchRegionP08244392 faldo:begin ?templateMotifSequenceMatchBeginP08244393 . ?templateMotifSequenceMatchBeginP08244393 faldo:position ?templateMotifSequenceMatchBeginPositionP08244388 ; faldo:reference isoform:P08244-1 . ?templateMotifSequenceProfileAlignmentOperationP08244394 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?targetMotifMatch395 faldo:location ?targetMotifMatchRegionMatch396 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B398 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08244MF_01200_B389 . ?targetMotifMatchRegionMatch396 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B397 . ?targetMotifMatchRegionMatchBeginMF_01200_B397 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B390 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01200_B398 edam:has_input signature:MF_01200_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B387, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B387) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B387, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionP08244388) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1399) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B389, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B389) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B389, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B389) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), '')))), '[^-]', ''))) AS ?step2400) . BIND(((?step2400 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B390) - 1) AS ?thisPositionOn139) . BIND(?thisPositionOn139 AS ?thisPositionOn140) . BIND(?this AS ?pfs2t401) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb135) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse136) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn139, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01200a134')) AS ?annotation134) . BIND(?this AS ?pfs133) . } }