CONSTRUCT { _:416174 up:source unirule:MF_01208 . _:416175 up:source unirule:MF_01208 . _:416176 up:source unirule:MF_01208 . _:416177 up:source unirule:MF_01208 . _:416178 up:source unirule:MF_01208 . _:416179 up:source unirule:MF_01208 . _:416180 up:source unirule:MF_01208 . _:416181 up:source unirule:MF_01208 . _:416182 up:source unirule:MF_01208 . _:416183 up:source unirule:MF_01208 . _:416184 up:source unirule:MF_01208 . _:416185 up:source unirule:MF_01208 . _:416186 up:source unirule:MF_01208 . _:416187 up:source unirule:MF_01208 . _:416188 up:source unirule:MF_01208 . _:416189 up:source unirule:MF_01208 . _:416190 up:source unirule:MF_01208 . _:416191 up:source unirule:MF_01208 . _:416192 up:source unirule:MF_01208 . _:416193 up:source unirule:MF_01208 . _:416194 up:source unirule:MF_01208 . _:416195 up:source unirule:MF_01208 . _:416196 up:source unirule:MF_01208 . _:416197 up:source unirule:MF_01208 . _:416198 up:source unirule:MF_01208 . _:416199 up:source unirule:MF_01208 . _:416200 up:source unirule:MF_01208 . _:416201 up:source unirule:MF_01208 . _:416202 up:source unirule:MF_01208 . _:416203 up:source unirule:MF_01208 . _:416204 up:source unirule:MF_01208 . _:416205 up:source unirule:MF_01208 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0000287 , GO:0004588 , GO:0006221 , keyword:328 , keyword:460 , keyword:665 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.4.2.10' ; up:fullName 'Orotate phosphoribosyltransferase' ; up:shortName 'OPRT' , 'OPRTase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'pyrE' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/10380>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.4.2.10>. ?annotation5 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2.' . ?annotation7 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:58017 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:30839 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:58017 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:58017 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:58017 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:58017 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:58017 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:58017 . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:30839 . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; up:ligand ?ligand76 ; rdf:type up:Binding_Site_Annotation . ?pfsb74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand76 rdfs:subClassOf chebi:30839 . ?pfs79 up:annotation ?annotation80 . ?annotation80 faldo:begin ?pfsb81 ; faldo:end ?pfse82 ; up:ligand ?ligand83 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?ligand83 rdfs:subClassOf chebi:58017 . ?pfs86 up:annotation ?annotation87 . ?annotation87 faldo:begin ?pfsb88 ; faldo:end ?pfse89 ; up:ligand ?ligand90 ; rdf:type up:Binding_Site_Annotation . ?pfsb88 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?ligand90 rdfs:subClassOf chebi:58017 . ?pfs93 up:annotation ?annotation94 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; up:ligand ?ligand97 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb95 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?ligand97 rdfs:subClassOf chebi:58017 . ?pfs100 up:annotation ?annotation101 . ?annotation101 faldo:begin ?pfsb102 ; faldo:end ?pfse103 ; up:ligand ?ligand104 ; rdf:type up:Binding_Site_Annotation . ?pfsb102 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?pfse103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?ligand104 rdfs:subClassOf chebi:58017 . ?pfs107 up:annotation ?annotation108 . ?annotation108 faldo:begin ?pfsb109 ; faldo:end ?pfse110 ; up:ligand ?ligand111 ; rdf:type up:Binding_Site_Annotation . ?pfsb109 faldo:position ?thisPositionOn112 ; rdf:type faldo:ExactPosition . ?pfse110 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?ligand111 rdfs:subClassOf chebi:58017 . ?pfs114 up:annotation ?annotation115 . ?annotation115 faldo:begin ?pfsb116 ; faldo:end ?pfse117 ; up:ligand ?ligand118 ; rdf:type up:Binding_Site_Annotation . ?pfsb116 faldo:position ?thisPositionOn119 ; rdf:type faldo:ExactPosition . ?pfse117 faldo:position ?thisPositionOn120 ; rdf:type faldo:ExactPosition . ?ligand118 rdfs:subClassOf chebi:30839 . ?pfs121 up:annotation ?annotation122 . ?annotation122 faldo:begin ?pfsb123 ; faldo:end ?pfse124 ; up:ligand ?ligand125 ; rdf:type up:Binding_Site_Annotation . ?pfsb123 faldo:position ?thisPositionOn126 ; rdf:type faldo:ExactPosition . ?pfse124 faldo:position ?thisPositionOn127 ; rdf:type faldo:ExactPosition . ?ligand125 rdfs:subClassOf chebi:30839 . _:416206 a rdf:Statement ; up:attribution _:416174 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:416207 a rdf:Statement ; up:attribution _:416175 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:416208 a rdf:Statement ; up:attribution _:416176 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:416209 a rdf:Statement ; up:attribution _:416177 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:416210 a rdf:Statement ; up:attribution _:416178 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:416211 a rdf:Statement ; up:attribution _:416179 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:416212 a rdf:Statement ; up:attribution _:416180 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:416213 a rdf:Statement ; up:attribution _:416181 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:416214 a rdf:Statement ; up:attribution _:416182 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:665 . _:416215 a rdf:Statement ; up:attribution _:416183 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:416216 a rdf:Statement ; up:attribution _:416184 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:328 . _:416217 a rdf:Statement ; up:attribution _:416185 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:416218 a rdf:Statement ; up:attribution _:416186 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:416219 a rdf:Statement ; up:attribution _:416187 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004588 . _:416220 a rdf:Statement ; up:attribution _:416188 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006221 . _:416221 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:416222 a rdf:Statement ; up:attribution _:416189 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:416223 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:416224 a rdf:Statement ; up:attribution _:416190 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:416225 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:416226 a rdf:Statement ; up:attribution _:416191 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:416227 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:416228 a rdf:Statement ; up:attribution _:416192 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:416229 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:416230 a rdf:Statement ; up:attribution _:416193 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:416231 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:416232 a rdf:Statement ; up:attribution _:416194 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:416233 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:416234 a rdf:Statement ; up:attribution _:416195 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:416235 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:416236 a rdf:Statement ; up:attribution _:416196 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:416237 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:416238 a rdf:Statement ; up:attribution _:416197 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:416239 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:416240 a rdf:Statement ; up:attribution _:416198 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:416241 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:416242 a rdf:Statement ; up:attribution _:416199 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:416243 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:416244 a rdf:Statement ; up:attribution _:416200 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:416245 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:416246 a rdf:Statement ; up:attribution _:416201 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:416247 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:416248 a rdf:Statement ; up:attribution _:416202 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:416249 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . _:416250 a rdf:Statement ; up:attribution _:416203 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . _:416251 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs114 ; rdf:predicate up:annotation ; rdf:object ?annotation115 . _:416252 a rdf:Statement ; up:attribution _:416204 ; rdf:subject ?pfs114 ; rdf:predicate up:annotation ; rdf:object ?annotation115 . _:416253 a rdf:Statement ; up:source unirule:MF_01208 ; rdf:subject ?pfs121 ; rdf:predicate up:annotation ; rdf:object ?annotation122 . _:416254 a rdf:Statement ; up:attribution _:416205 ; rdf:subject ?pfs121 ; rdf:predicate up:annotation ; rdf:object ?annotation122 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01208 #Rule MF_01208 Created by:coudert on:2002-05-30 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon128 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01208 . ?thisOrganism rdfs:subClassOf+ ?supertaxon128 . BIND(URI(CONCAT(STR(?this), '#MF_01208a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01208a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01208a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01208a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01208a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01208a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01208a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP08870134 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870136 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08870MF_01208129 . ?templateMotifSequenceMatchRegionP08870134 faldo:begin ?templateMotifSequenceMatchBeginP08870135 . ?templateMotifSequenceMatchBeginP08870135 faldo:position ?templateMotifSequenceMatchBeginPositionP08870130 ; faldo:reference isoform:P08870-1 . ?templateMotifSequenceProfileAlignmentOperationP08870136 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208140 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08870MF_01208131 . ?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208139 . ?targetMotifMatchRegionMatchBeginMF_01208139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208132 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208140 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208129, 1, (STRLEN(?templateMotifCigarP08870MF_01208129) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208129, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP08870130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208131, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208131) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208131, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208131) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01208132) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208129, 1, (STRLEN(?templateMotifCigarP08870MF_01208129) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208129, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP08870130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208131, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208131) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208131, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208131) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) . BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01208132) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t145) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) . BIND(URI(CONCAT(STR(?this), '#MF_01208a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP08870151 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870153 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08870MF_01208146 . ?templateMotifSequenceMatchRegionP08870151 faldo:begin ?templateMotifSequenceMatchBeginP08870152 . ?templateMotifSequenceMatchBeginP08870152 faldo:position ?templateMotifSequenceMatchBeginPositionP08870147 ; faldo:reference isoform:P08870-1 . ?templateMotifSequenceProfileAlignmentOperationP08870153 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208157 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08870MF_01208148 . ?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208156 . ?targetMotifMatchRegionMatchBeginMF_01208156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208149 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208157 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208146, 1, (STRLEN(?templateMotifCigarP08870MF_01208146) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208146, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP08870147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208148, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208148) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208148, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208148) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) . BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_01208149) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208146, 1, (STRLEN(?templateMotifCigarP08870MF_01208146) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208146, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP08870147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208148, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208148) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208148, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208148) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) . BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_01208149) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs1t162) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)) = 'FF')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP08870168 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870170 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08870MF_01208163 . ?templateMotifSequenceMatchRegionP08870168 faldo:begin ?templateMotifSequenceMatchBeginP08870169 . ?templateMotifSequenceMatchBeginP08870169 faldo:position ?templateMotifSequenceMatchBeginPositionP08870164 ; faldo:reference isoform:P08870-1 . ?templateMotifSequenceProfileAlignmentOperationP08870170 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208174 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08870MF_01208165 . ?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208173 . ?targetMotifMatchRegionMatchBeginMF_01208173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208166 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208174 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208163, 1, (STRLEN(?templateMotifCigarP08870MF_01208163) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208163, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP08870164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208165, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208165) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208165, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208165) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) . BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_01208166) - 1) AS ?thisPositionOn28) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208163, 1, (STRLEN(?templateMotifCigarP08870MF_01208163) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208163, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP08870164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208165, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208165) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208165, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208165) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) . BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01208166) - 1) AS ?thisPositionOn29) . BIND(?this AS ?pfs1t179) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)) = 'YK')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP08870185 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870187 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08870MF_01208180 . ?templateMotifSequenceMatchRegionP08870185 faldo:begin ?templateMotifSequenceMatchBeginP08870186 . ?templateMotifSequenceMatchBeginP08870186 faldo:position ?templateMotifSequenceMatchBeginPositionP08870181 ; faldo:reference isoform:P08870-1 . ?templateMotifSequenceProfileAlignmentOperationP08870187 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208191 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08870MF_01208182 . ?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208190 . ?targetMotifMatchRegionMatchBeginMF_01208190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208183 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208191 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208180, 1, (STRLEN(?templateMotifCigarP08870MF_01208180) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208180, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP08870181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208182, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208182) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208182, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208182) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_01208183) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01208a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP08870200 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870202 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08870MF_01208195 . ?templateMotifSequenceMatchRegionP08870200 faldo:begin ?templateMotifSequenceMatchBeginP08870201 . ?templateMotifSequenceMatchBeginP08870201 faldo:position ?templateMotifSequenceMatchBeginPositionP08870196 ; faldo:reference isoform:P08870-1 . ?templateMotifSequenceProfileAlignmentOperationP08870202 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208206 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08870MF_01208197 . ?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208205 . ?targetMotifMatchRegionMatchBeginMF_01208205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208198 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208206 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208195, 1, (STRLEN(?templateMotifCigarP08870MF_01208195) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208195, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP08870196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208197, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208197) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208197, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208197) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) . BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_01208198) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t209) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP08870215 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870217 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08870MF_01208210 . ?templateMotifSequenceMatchRegionP08870215 faldo:begin ?templateMotifSequenceMatchBeginP08870216 . ?templateMotifSequenceMatchBeginP08870216 faldo:position ?templateMotifSequenceMatchBeginPositionP08870211 ; faldo:reference isoform:P08870-1 . ?templateMotifSequenceProfileAlignmentOperationP08870217 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208221 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08870MF_01208212 . ?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208220 . ?targetMotifMatchRegionMatchBeginMF_01208220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208213 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208221 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208210, 1, (STRLEN(?templateMotifCigarP08870MF_01208210) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208210, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP08870211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208212, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208212) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208212, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208212) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) . BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_01208213) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t224) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP08870230 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870232 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08870MF_01208225 . ?templateMotifSequenceMatchRegionP08870230 faldo:begin ?templateMotifSequenceMatchBeginP08870231 . ?templateMotifSequenceMatchBeginP08870231 faldo:position ?templateMotifSequenceMatchBeginPositionP08870226 ; faldo:reference isoform:P08870-1 . ?templateMotifSequenceProfileAlignmentOperationP08870232 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208236 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08870MF_01208227 . ?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208235 . ?targetMotifMatchRegionMatchBeginMF_01208235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208228 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208236 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208225, 1, (STRLEN(?templateMotifCigarP08870MF_01208225) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208225, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP08870226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208227, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208227) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208227, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208227) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) . BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_01208228) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t239) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP08870245 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870247 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08870MF_01208240 . ?templateMotifSequenceMatchRegionP08870245 faldo:begin ?templateMotifSequenceMatchBeginP08870246 . ?templateMotifSequenceMatchBeginP08870246 faldo:position ?templateMotifSequenceMatchBeginPositionP08870241 ; faldo:reference isoform:P08870-1 . ?templateMotifSequenceProfileAlignmentOperationP08870247 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208251 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08870MF_01208242 . ?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208250 . ?targetMotifMatchRegionMatchBeginMF_01208250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208243 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208251 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208240, 1, (STRLEN(?templateMotifCigarP08870MF_01208240) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208240, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP08870241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208242, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208242) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208242, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208242) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) . BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_01208243) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t254) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP08870260 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870262 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08870MF_01208255 . ?templateMotifSequenceMatchRegionP08870260 faldo:begin ?templateMotifSequenceMatchBeginP08870261 . ?templateMotifSequenceMatchBeginP08870261 faldo:position ?templateMotifSequenceMatchBeginPositionP08870256 ; faldo:reference isoform:P08870-1 . ?templateMotifSequenceProfileAlignmentOperationP08870262 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208266 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08870MF_01208257 . ?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208265 . ?targetMotifMatchRegionMatchBeginMF_01208265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208258 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208266 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208255, 1, (STRLEN(?templateMotifCigarP08870MF_01208255) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208255, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP08870256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208257, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208257) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208257, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208257) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) . BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_01208258) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs1t269) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01208a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP08870275 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870277 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08870MF_01208270 . ?templateMotifSequenceMatchRegionP08870275 faldo:begin ?templateMotifSequenceMatchBeginP08870276 . ?templateMotifSequenceMatchBeginP08870276 faldo:position ?templateMotifSequenceMatchBeginPositionP08870271 ; faldo:reference isoform:P08870-1 . ?templateMotifSequenceProfileAlignmentOperationP08870277 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208281 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08870MF_01208272 . ?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208280 . ?targetMotifMatchRegionMatchBeginMF_01208280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208273 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208281 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208270, 1, (STRLEN(?templateMotifCigarP08870MF_01208270) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208270, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP08870271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208272, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208272) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208272, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208272) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) . BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_01208273) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs1t284) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionO58855290 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855292 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58855MF_01208285 . ?templateMotifSequenceMatchRegionO58855290 faldo:begin ?templateMotifSequenceMatchBeginO58855291 . ?templateMotifSequenceMatchBeginO58855291 faldo:position ?templateMotifSequenceMatchBeginPositionO58855286 ; faldo:reference isoform:O58855-1 . ?templateMotifSequenceProfileAlignmentOperationO58855292 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208296 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58855MF_01208287 . ?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208295 . ?targetMotifMatchRegionMatchBeginMF_01208295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208288 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208296 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208285, 1, (STRLEN(?templateMotifCigarO58855MF_01208285) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208285, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionO58855286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208287, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208287) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208287, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208287) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) . BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_01208288) - 1) AS ?thisPositionOn84) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208285, 1, (STRLEN(?templateMotifCigarO58855MF_01208285) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208285, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionO58855286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208287, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208287) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208287, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208287) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) . BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_01208288) - 1) AS ?thisPositionOn85) . BIND(?this AS ?pfs2t301) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) . FILTER ((BOUND(?thisPositionOn84) && BOUND(?thisPositionOn85))) . BIND(URI(CONCAT(STR(?this), '#MF_01208a80')) AS ?annotation80) . BIND(?this AS ?pfs79) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch306 faldo:location ?templateMotifSequenceMatchRegionO58855307 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855309 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58855MF_01208302 . ?templateMotifSequenceMatchRegionO58855307 faldo:begin ?templateMotifSequenceMatchBeginO58855308 . ?templateMotifSequenceMatchBeginO58855308 faldo:position ?templateMotifSequenceMatchBeginPositionO58855303 ; faldo:reference isoform:O58855-1 . ?templateMotifSequenceProfileAlignmentOperationO58855309 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch310 faldo:location ?targetMotifMatchRegionMatch311 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208313 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58855MF_01208304 . ?targetMotifMatchRegionMatch311 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208312 . ?targetMotifMatchRegionMatchBeginMF_01208312 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208305 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208313 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208302, 1, (STRLEN(?templateMotifCigarO58855MF_01208302) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208302, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionO58855303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208304, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208304) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208304, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208304) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) . BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_01208305) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs2t316) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a87')) AS ?annotation87) . BIND(?this AS ?pfs86) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch321 faldo:location ?templateMotifSequenceMatchRegionO58855322 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855324 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58855MF_01208317 . ?templateMotifSequenceMatchRegionO58855322 faldo:begin ?templateMotifSequenceMatchBeginO58855323 . ?templateMotifSequenceMatchBeginO58855323 faldo:position ?templateMotifSequenceMatchBeginPositionO58855318 ; faldo:reference isoform:O58855-1 . ?templateMotifSequenceProfileAlignmentOperationO58855324 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch325 faldo:location ?targetMotifMatchRegionMatch326 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208328 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58855MF_01208319 . ?targetMotifMatchRegionMatch326 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208327 . ?targetMotifMatchRegionMatchBeginMF_01208327 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208320 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208328 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208317, 1, (STRLEN(?templateMotifCigarO58855MF_01208317) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208317, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionO58855318) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1329) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208319, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208319) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208319, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208319) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), '')))), '[^-]', ''))) AS ?step2330) . BIND(((?step2330 + ?targetMotifMatchRegionMatchBeginPositionMF_01208320) - 1) AS ?thisPositionOn98) . BIND(?thisPositionOn98 AS ?thisPositionOn99) . BIND(?this AS ?pfs2t331) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a94')) AS ?annotation94) . BIND(?this AS ?pfs93) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch336 faldo:location ?templateMotifSequenceMatchRegionO58855337 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855339 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58855MF_01208332 . ?templateMotifSequenceMatchRegionO58855337 faldo:begin ?templateMotifSequenceMatchBeginO58855338 . ?templateMotifSequenceMatchBeginO58855338 faldo:position ?templateMotifSequenceMatchBeginPositionO58855333 ; faldo:reference isoform:O58855-1 . ?templateMotifSequenceProfileAlignmentOperationO58855339 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch340 faldo:location ?targetMotifMatchRegionMatch341 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208343 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58855MF_01208334 . ?targetMotifMatchRegionMatch341 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208342 . ?targetMotifMatchRegionMatchBeginMF_01208342 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208335 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208343 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208332, 1, (STRLEN(?templateMotifCigarO58855MF_01208332) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208332, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionO58855333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208334, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208334) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208334, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208334) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) . BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_01208335) - 1) AS ?thisPositionOn105) . BIND(?thisPositionOn105 AS ?thisPositionOn106) . BIND(?this AS ?pfs2t346) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) . FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01208a101')) AS ?annotation101) . BIND(?this AS ?pfs100) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionO58855352 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855354 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58855MF_01208347 . ?templateMotifSequenceMatchRegionO58855352 faldo:begin ?templateMotifSequenceMatchBeginO58855353 . ?templateMotifSequenceMatchBeginO58855353 faldo:position ?templateMotifSequenceMatchBeginPositionO58855348 ; faldo:reference isoform:O58855-1 . ?templateMotifSequenceProfileAlignmentOperationO58855354 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208358 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58855MF_01208349 . ?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208357 . ?targetMotifMatchRegionMatchBeginMF_01208357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208350 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208358 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208347, 1, (STRLEN(?templateMotifCigarO58855MF_01208347) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208347, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionO58855348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208349, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208349) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208349, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208349) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) . BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_01208350) - 1) AS ?thisPositionOn112) . BIND(?thisPositionOn112 AS ?thisPositionOn113) . BIND(?this AS ?pfs2t361) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a108')) AS ?annotation108) . BIND(?this AS ?pfs107) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch366 faldo:location ?templateMotifSequenceMatchRegionO58855367 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855369 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58855MF_01208362 . ?templateMotifSequenceMatchRegionO58855367 faldo:begin ?templateMotifSequenceMatchBeginO58855368 . ?templateMotifSequenceMatchBeginO58855368 faldo:position ?templateMotifSequenceMatchBeginPositionO58855363 ; faldo:reference isoform:O58855-1 . ?templateMotifSequenceProfileAlignmentOperationO58855369 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch370 faldo:location ?targetMotifMatchRegionMatch371 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208373 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58855MF_01208364 . ?targetMotifMatchRegionMatch371 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208372 . ?targetMotifMatchRegionMatchBeginMF_01208372 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208365 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208373 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208362, 1, (STRLEN(?templateMotifCigarO58855MF_01208362) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208362, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionO58855363) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1374) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208364, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208364) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1374), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208364, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208364) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1374), '}'), '')))), '[^-]', ''))) AS ?step2375) . BIND(((?step2375 + ?targetMotifMatchRegionMatchBeginPositionMF_01208365) - 1) AS ?thisPositionOn119) . BIND(?thisPositionOn119 AS ?thisPositionOn120) . BIND(?this AS ?pfs2t376) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a115')) AS ?annotation115) . BIND(?this AS ?pfs114) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch381 faldo:location ?templateMotifSequenceMatchRegionO58855382 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855384 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO58855MF_01208377 . ?templateMotifSequenceMatchRegionO58855382 faldo:begin ?templateMotifSequenceMatchBeginO58855383 . ?templateMotifSequenceMatchBeginO58855383 faldo:position ?templateMotifSequenceMatchBeginPositionO58855378 ; faldo:reference isoform:O58855-1 . ?templateMotifSequenceProfileAlignmentOperationO58855384 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?targetMotifMatch385 faldo:location ?targetMotifMatchRegionMatch386 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208388 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO58855MF_01208379 . ?targetMotifMatchRegionMatch386 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208387 . ?targetMotifMatchRegionMatchBeginMF_01208387 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208380 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01208388 edam:has_input signature:MF_01208 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208377, 1, (STRLEN(?templateMotifCigarO58855MF_01208377) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208377, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionO58855378) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1389) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208379, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208379) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1389), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208379, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208379) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1389), '}'), '')))), '[^-]', ''))) AS ?step2390) . BIND(((?step2390 + ?targetMotifMatchRegionMatchBeginPositionMF_01208380) - 1) AS ?thisPositionOn126) . BIND(?thisPositionOn126 AS ?thisPositionOn127) . BIND(?this AS ?pfs2t391) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn126, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01208a122')) AS ?annotation122) . BIND(?this AS ?pfs121) . } }