CONSTRUCT { _:440987 up:source unirule:MF_01252 . _:440988 up:source unirule:MF_01252 . _:440989 up:source unirule:MF_01252 . _:440990 up:source unirule:MF_01252 . _:440991 up:source unirule:MF_01252 . _:440992 up:source unirule:MF_01252 . _:440993 up:source unirule:MF_01252 . _:440994 up:source unirule:MF_01252 . _:440995 up:source unirule:MF_01252 . _:440996 up:source unirule:MF_01252 . _:440997 up:source unirule:MF_01252 . _:440998 up:source unirule:MF_01252 . _:440999 up:source unirule:MF_01252 . _:441000 up:source unirule:MF_01252 . _:441001 up:source unirule:MF_01252 . _:441002 up:source unirule:MF_01252 . _:441003 up:source unirule:MF_01252 . _:441004 up:source unirule:MF_01252 . _:441005 up:source unirule:MF_01252 . _:441006 up:source unirule:MF_01252 . _:441007 up:source unirule:MF_01252 . _:441008 up:source unirule:MF_01252 . _:441009 up:source unirule:MF_01252 . _:441010 up:source unirule:MF_01252 . _:441011 up:source unirule:MF_01252 . _:441012 up:source unirule:MF_01252 . _:441013 up:source unirule:MF_01252 . _:441014 up:source unirule:MF_01252 . _:441015 up:source unirule:MF_01252 . _:441016 up:source unirule:MF_01252 . _:441017 up:source unirule:MF_01252 . _:441018 up:source unirule:MF_01252 . _:441019 up:source unirule:MF_01252 . _:441020 up:source unirule:MF_01252 . _:441021 up:source unirule:MF_01252 . _:441022 up:source unirule:MF_01252 . _:441023 up:source unirule:MF_01252 . ?this up:alternativeName ?name1 , ?name2 , ?name3 ; up:annotation ?annotation5 , ?annotation7 , ?annotation9 , ?annotation10 , ?annotation11 , ?annotation12 , ?annotation13 ; up:classifiedWith GO:0005344 , GO:0008941 , GO:0015671 , keyword:274 , keyword:285 , keyword:349 , keyword:408 , keyword:479 , keyword:520 , keyword:521 , keyword:560 , keyword:561 , keyword:813 ; up:recommendedName ?name0 . ?name0 up:fullName 'Flavohemoprotein' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Flavohemoglobin' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Hemoglobin-like protein' ; rdf:type up:Structured_Name . ?name3 up:ecName '1.14.12.17' ; up:fullName 'Nitric oxide dioxygenase' ; up:shortName 'NO oxygenase' , 'NOD' ; rdf:type up:Structured_Name . ?gene4 skos:prefLabel 'hmp' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/19465>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.14.12.17>. ?annotation7 up:activity ?activity8 ; rdf:type up:Catalytic_Activity_Annotation . ?activity8 up:catalyticActivity <http://rdf.rhea-db.org/19469>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.14.12.17>. ?annotation9 up:cofactor chebi:60344 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 heme b (iron(II)-protoporphyrin IX) group per subunit.' . ?annotation10 up:cofactor chebi:57692 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 FAD per subunit.' . ?annotation11 a up:Domain_Annotation ; rdfs:comment 'Consists of two distinct domains; an N-terminal heme-containing oxygen-binding domain and a C-terminal reductase domain with binding sites for FAD and NAD(P)H.' . ?annotation12 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the globin family. Two-domain flavohemoproteins subfamily.' . ?annotation13 a up:Similarity_Annotation ; rdfs:comment 'In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.' . ?case14 up:classifiedWith keyword:216 . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; rdf:type up:Region_Annotation ; rdfs:comment 'Reductase' . ?pfsb17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:57692 . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:58349 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:57692 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Charge relay system' . ?pfsb44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Charge relay system' . ?pfsb50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'proximal binding residue' . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 up:ligandPart ?ligand58 ; rdfs:subClassOf chebi:18248 , chebi:60344 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:57692 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; rdf:type up:Site_Annotation ; rdfs:comment 'Involved in heme-bound ligand stabilization and O-O bond activation' . ?pfsb70 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; rdf:type up:Site_Annotation ; rdfs:comment 'Influences the redox potential of the prosthetic heme and FAD groups' . ?pfsb76 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; rdf:type up:Site_Annotation ; rdfs:comment 'Influences the redox potential of the prosthetic heme and FAD groups' . ?pfsb82 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . _:441024 a rdf:Statement ; up:attribution _:440987 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:441025 a rdf:Statement ; up:attribution _:440988 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:441026 a rdf:Statement ; up:attribution _:440989 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:441027 a rdf:Statement ; up:attribution _:440990 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:441028 a rdf:Statement ; up:attribution _:440991 ; rdf:subject ?gene4 ; rdf:predicate up:encodedBy ; rdf:object ?gene4 . _:441029 a rdf:Statement ; up:attribution _:440992 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:441030 a rdf:Statement ; up:attribution _:440993 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:441031 a rdf:Statement ; up:attribution _:440994 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:441032 a rdf:Statement ; up:attribution _:440995 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:441033 a rdf:Statement ; up:attribution _:440996 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:441034 a rdf:Statement ; up:attribution _:440997 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:441035 a rdf:Statement ; up:attribution _:440998 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:441036 a rdf:Statement ; up:attribution _:440999 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:274 . _:441037 a rdf:Statement ; up:attribution _:441000 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:285 . _:441038 a rdf:Statement ; up:attribution _:441001 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:349 . _:441039 a rdf:Statement ; up:attribution _:441002 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:441040 a rdf:Statement ; up:attribution _:441003 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:441041 a rdf:Statement ; up:attribution _:441004 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:441042 a rdf:Statement ; up:attribution _:441005 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:521 . _:441043 a rdf:Statement ; up:attribution _:441006 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:441044 a rdf:Statement ; up:attribution _:441007 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:561 . _:441045 a rdf:Statement ; up:attribution _:441008 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:441046 a rdf:Statement ; up:attribution _:441009 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005344 . _:441047 a rdf:Statement ; up:attribution _:441010 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008941 . _:441048 a rdf:Statement ; up:attribution _:441011 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015671 . _:441049 a rdf:Statement ; up:attribution _:441012 ; rdf:subject ?case14 ; rdf:predicate up:classifiedWith ; rdf:object keyword:216 . _:441050 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:441051 a rdf:Statement ; up:attribution _:441013 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:441052 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:441053 a rdf:Statement ; up:attribution _:441014 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:441054 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:441055 a rdf:Statement ; up:attribution _:441015 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:441056 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:441057 a rdf:Statement ; up:attribution _:441016 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:441058 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:441059 a rdf:Statement ; up:attribution _:441017 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:441060 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:441061 a rdf:Statement ; up:attribution _:441018 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:441062 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:441063 a rdf:Statement ; up:attribution _:441019 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:441064 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:441065 a rdf:Statement ; up:attribution _:441020 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:441066 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:441067 a rdf:Statement ; up:attribution _:441021 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:441068 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:441069 a rdf:Statement ; up:attribution _:441022 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:441070 a rdf:Statement ; up:source unirule:MF_01252 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:441071 a rdf:Statement ; up:attribution _:441023 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01252 #Rule MF_01252 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01252 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_01252a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01252a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01252a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01252a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_01252a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01252a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01252a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01252a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01252a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_01252a12')) AS ?annotation12) . BIND(URI(CONCAT(STR(?this), '#MF_01252a13')) AS ?annotation13) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP2423291 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2423293 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_0125286 . ?templateMotifSequenceMatchRegionP2423291 faldo:begin ?templateMotifSequenceMatchBeginP2423292 . ?templateMotifSequenceMatchBeginP2423292 faldo:position ?templateMotifSequenceMatchBeginPositionP2423287 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP2423293 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0125297 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_0125288 . ?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0125296 . ?targetMotifMatchRegionMatchBeginMF_0125296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0125289 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0125297 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_0125286, 1, (STRLEN(?templateMotifCigarP24232MF_0125286) - STRLEN(REPLACE(?templateMotifCigarP24232MF_0125286, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP2423287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_0125288, 1, (STRLEN(?targetMotifMatchCigarP24232MF_0125288) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_0125288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_0125288, 1, (STRLEN(?targetMotifMatchCigarP24232MF_0125288) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_0125288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) . BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0125289) - 1) AS ?thisPositionOn19) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn20) . BIND(?this AS ?pfs1t100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) . FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) . BIND(URI(CONCAT(STR(?this), '#MF_01252a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP24232106 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232108 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_01252101 . ?templateMotifSequenceMatchRegionP24232106 faldo:begin ?templateMotifSequenceMatchBeginP24232107 . ?templateMotifSequenceMatchBeginP24232107 faldo:position ?templateMotifSequenceMatchBeginPositionP24232102 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP24232108 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252112 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_01252103 . ?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252111 . ?targetMotifMatchRegionMatchBeginMF_01252111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252104 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01252112 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252101, 1, (STRLEN(?templateMotifCigarP24232MF_01252101) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252101, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP24232102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252103, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252103) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252103, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252103) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01252104) - 1) AS ?thisPositionOn26) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252101, 1, (STRLEN(?templateMotifCigarP24232MF_01252101) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252101, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionP24232102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252103, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252103) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252103, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252103) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) . BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01252104) - 1) AS ?thisPositionOn27) . BIND(?this AS ?pfs1t117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER (REGEX('R[QN]YS', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) . BIND(URI(CONCAT(STR(?this), '#MF_01252a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP24232123 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232125 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_01252118 . ?templateMotifSequenceMatchRegionP24232123 faldo:begin ?templateMotifSequenceMatchBeginP24232124 . ?templateMotifSequenceMatchBeginP24232124 faldo:position ?templateMotifSequenceMatchBeginPositionP24232119 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP24232125 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252129 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_01252120 . ?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252128 . ?targetMotifMatchRegionMatchBeginMF_01252128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252121 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01252129 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252118, 1, (STRLEN(?templateMotifCigarP24232MF_01252118) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252118, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP24232119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252120, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252120) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252120, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252120) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01252121) - 1) AS ?thisPositionOn33) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252118, 1, (STRLEN(?templateMotifCigarP24232MF_01252118) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252118, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP24232119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252120, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252120) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252120, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252120) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01252121) - 1) AS ?thisPositionOn34) . BIND(?this AS ?pfs1t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER (REGEX('G[VI]G[QILAV]TP', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) . BIND(URI(CONCAT(STR(?this), '#MF_01252a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP24232140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_01252135 . ?templateMotifSequenceMatchRegionP24232140 faldo:begin ?templateMotifSequenceMatchBeginP24232141 . ?templateMotifSequenceMatchBeginP24232141 faldo:position ?templateMotifSequenceMatchBeginPositionP24232136 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP24232142 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_01252137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252145 . ?targetMotifMatchRegionMatchBeginMF_01252145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01252146 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252135, 1, (STRLEN(?templateMotifCigarP24232MF_01252135) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252135, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionP24232136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252137, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252137) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252137, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252137) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01252138) - 1) AS ?thisPositionOn40) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252135, 1, (STRLEN(?templateMotifCigarP24232MF_01252135) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252135, CONCAT('^(?:-*[^-]){', STR(((392 - ?templateMotifSequenceMatchBeginPositionP24232136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252137, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252137) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252137, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252137) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_01252138) - 1) AS ?thisPositionOn41) . BIND(?this AS ?pfs1t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER (REGEX('[CLFVT]FG[PST]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) . BIND(URI(CONCAT(STR(?this), '#MF_01252a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP24232157 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232159 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_01252152 . ?templateMotifSequenceMatchRegionP24232157 faldo:begin ?templateMotifSequenceMatchBeginP24232158 . ?templateMotifSequenceMatchBeginP24232158 faldo:position ?templateMotifSequenceMatchBeginPositionP24232153 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP24232159 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252163 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_01252154 . ?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252162 . ?targetMotifMatchRegionMatchBeginMF_01252162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252155 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01252163 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252152, 1, (STRLEN(?templateMotifCigarP24232MF_01252152) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252152, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP24232153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252154, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252154) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252154, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252154) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) . BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_01252155) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs1t166) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01252a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP24232172 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232174 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_01252167 . ?templateMotifSequenceMatchRegionP24232172 faldo:begin ?templateMotifSequenceMatchBeginP24232173 . ?templateMotifSequenceMatchBeginP24232173 faldo:position ?templateMotifSequenceMatchBeginPositionP24232168 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP24232174 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252178 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_01252169 . ?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252177 . ?targetMotifMatchRegionMatchBeginMF_01252177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252170 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01252178 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252167, 1, (STRLEN(?templateMotifCigarP24232MF_01252167) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252167, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP24232168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252169, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252169) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252169, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252169) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) . BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_01252170) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t181) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01252a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionP24232187 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232189 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_01252182 . ?templateMotifSequenceMatchRegionP24232187 faldo:begin ?templateMotifSequenceMatchBeginP24232188 . ?templateMotifSequenceMatchBeginP24232188 faldo:position ?templateMotifSequenceMatchBeginPositionP24232183 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP24232189 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252193 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_01252184 . ?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252192 . ?targetMotifMatchRegionMatchBeginMF_01252192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252185 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01252193 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252182, 1, (STRLEN(?templateMotifCigarP24232MF_01252182) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252182, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP24232183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252184, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252184) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252184, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252184) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) . BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_01252185) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t196) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01252a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionP24232202 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232204 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_01252197 . ?templateMotifSequenceMatchRegionP24232202 faldo:begin ?templateMotifSequenceMatchBeginP24232203 . ?templateMotifSequenceMatchBeginP24232203 faldo:position ?templateMotifSequenceMatchBeginPositionP24232198 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP24232204 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252208 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_01252199 . ?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252207 . ?targetMotifMatchRegionMatchBeginMF_01252207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252200 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01252208 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252197, 1, (STRLEN(?templateMotifCigarP24232MF_01252197) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252197, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionP24232198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252199, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252199) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252199, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252199) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) . BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_01252200) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t211) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01252a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP24232217 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232219 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_01252212 . ?templateMotifSequenceMatchRegionP24232217 faldo:begin ?templateMotifSequenceMatchBeginP24232218 . ?templateMotifSequenceMatchBeginP24232218 faldo:position ?templateMotifSequenceMatchBeginPositionP24232213 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP24232219 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252223 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_01252214 . ?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252222 . ?targetMotifMatchRegionMatchBeginMF_01252222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252215 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01252223 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252212, 1, (STRLEN(?templateMotifCigarP24232MF_01252212) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252212, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP24232213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252214, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252214) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252214, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252214) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) . BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_01252215) - 1) AS ?thisPositionOn72) . BIND(?thisPositionOn72 AS ?thisPositionOn73) . BIND(?this AS ?pfs1t226) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01252a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionP24232232 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232234 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_01252227 . ?templateMotifSequenceMatchRegionP24232232 faldo:begin ?templateMotifSequenceMatchBeginP24232233 . ?templateMotifSequenceMatchBeginP24232233 faldo:position ?templateMotifSequenceMatchBeginPositionP24232228 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP24232234 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252238 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_01252229 . ?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252237 . ?targetMotifMatchRegionMatchBeginMF_01252237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252230 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01252238 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252227, 1, (STRLEN(?templateMotifCigarP24232MF_01252227) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252227, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP24232228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252229, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252229) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252229, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252229) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) . BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_01252230) - 1) AS ?thisPositionOn78) . BIND(?thisPositionOn78 AS ?thisPositionOn79) . BIND(?this AS ?pfs1t241) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01252a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch246 faldo:location ?templateMotifSequenceMatchRegionP24232247 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232249 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24232MF_01252242 . ?templateMotifSequenceMatchRegionP24232247 faldo:begin ?templateMotifSequenceMatchBeginP24232248 . ?templateMotifSequenceMatchBeginP24232248 faldo:position ?templateMotifSequenceMatchBeginPositionP24232243 ; faldo:reference isoform:P24232-1 . ?templateMotifSequenceProfileAlignmentOperationP24232249 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . ?targetMotifMatch250 faldo:location ?targetMotifMatchRegionMatch251 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252253 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24232MF_01252244 . ?targetMotifMatchRegionMatch251 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252252 . ?targetMotifMatchRegionMatchBeginMF_01252252 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252245 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01252253 edam:has_input signature:MF_01252 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252242, 1, (STRLEN(?templateMotifCigarP24232MF_01252242) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252242, CONCAT('^(?:-*[^-]){', STR(((388 - ?templateMotifSequenceMatchBeginPositionP24232243) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1254) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252244, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252244) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252244, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252244) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), '')))), '[^-]', ''))) AS ?step2255) . BIND(((?step2255 + ?targetMotifMatchRegionMatchBeginPositionMF_01252245) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs1t256) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01252a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } OPTIONAL { ?this a up:Protein . VALUES ?supertaxon257 {taxon:1224 taxon:1385} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon257 . BIND(?this AS ?case14) . } }