CONSTRUCT { _:444341 up:source unirule:MF_01259 . _:444342 up:ecName '6.3.2.31' , '6.3.2.34' ; up:fullName 'Coenzyme F420:L-glutamate ligase' ; rdf:type up:Structured_Name . _:444343 up:fullName 'Coenzyme F420-0:L-glutamate ligase' ; rdf:type up:Structured_Name . _:444344 up:fullName 'Coenzyme F420-1:gamma-L-glutamate ligase' ; rdf:type up:Structured_Name . _:444345 up:source unirule:MF_01259 . _:444346 up:ecName '1.3.8.17' ; up:fullName 'Dehydro-coenzyme F420-0 reductase' ; rdf:type up:Structured_Name . _:444347 up:source unirule:MF_01259 . _:444348 up:source unirule:MF_01259 . _:444349 up:source unirule:MF_01259 . _:444350 up:source unirule:MF_01259 . _:444351 up:source unirule:MF_01259 . _:444352 up:source unirule:MF_01259 . _:444353 up:source unirule:MF_01259 . _:444354 up:source unirule:MF_01259 . _:444355 up:source unirule:MF_01259 . _:444356 up:source unirule:MF_01259 . _:444357 up:source unirule:MF_01259 . _:444358 up:source unirule:MF_01259 . _:444359 up:source unirule:MF_01259 . _:444360 up:source unirule:MF_01259 . _:444361 up:source unirule:MF_01259 . _:444362 up:source unirule:MF_01259 . _:444363 up:source unirule:MF_01259 . _:444364 up:source unirule:MF_01259 . _:444365 up:source unirule:MF_01259 . _:444366 up:source unirule:MF_01259 . _:444367 up:source unirule:MF_01259 . _:444368 up:source unirule:MF_01259 . _:444369 up:source unirule:MF_01259 . _:444370 up:source unirule:MF_01259 . _:444371 up:source unirule:MF_01259 . _:444372 up:source unirule:MF_01259 . _:444373 up:source unirule:MF_01259 . _:444374 up:source unirule:MF_01259 . _:444375 up:source unirule:MF_01259 . _:444376 up:source unirule:MF_01259 . _:444377 up:source unirule:MF_01259 . _:444378 up:source unirule:MF_01259 . _:444379 up:source unirule:MF_01259 . _:444380 up:source unirule:MF_01259 . _:444381 up:source unirule:MF_01259 . _:444382 up:source unirule:MF_01259 . ?this up:annotation ?annotation4 , ?annotation6 , ?annotation8 , ?annotation10 , ?annotation11 , ?annotation12 , ?annotation13 ; up:classifiedWith GO:0052618 , GO:0052619 , GO:0052645 , GO:0052890 , keyword:342 , keyword:436 , keyword:460 , keyword:464 , keyword:479 , keyword:511 , keyword:547 , keyword:560 , keyword:630 ; up:domain ?namedpart1 , ?namedpart2 ; up:recommendedName ?name0 . ?name0 up:fullName 'Bifunctional F420 biosynthesis protein FbiB' ; rdf:type up:Structured_Name . ?namedpart1 up:alternativeName _:444343 , _:444344 ; up:recommendedName _:444342 . ?namedpart2 up:recommendedName _:444346 . ?gene3 skos:prefLabel 'fbiB' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/30555>; up:enzymeClass <http://purl.uniprot.org/enzyme/6.3.2.31>. ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/30523>; up:enzymeClass <http://purl.uniprot.org/enzyme/6.3.2.34>. ?annotation8 up:activity ?activity9 ; rdf:type up:Catalytic_Activity_Annotation . ?activity9 up:catalyticActivity <http://rdf.rhea-db.org/60360>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.3.8.17>. ?annotation10 up:cofactor chebi:18420 , chebi:29035 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 divalent metal cations per subunit. The ions could be magnesium and/or manganese.' . ?annotation11 up:cofactor chebi:29103 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Monovalent cation. The ion could be potassium.' . ?annotation12 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; coenzyme F420 biosynthesis.' . ?annotation13 a up:Similarity_Annotation ; rdfs:comment 'In the N-terminal section; belongs to the CofE family.' . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; rdf:type up:Region_Annotation ; rdfs:comment 'Coenzyme F420:L-glutamate ligase' . ?pfsb18 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; rdf:type up:Region_Annotation ; rdfs:comment 'Dehydro-coenzyme F420-0 reductase' . ?pfsb24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:37565 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:58210 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf chebi:60240 . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:60240 . ?pfs56 up:annotation ?annotation57 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; up:ligand ?ligand60 ; rdf:type up:Binding_Site_Annotation . ?pfsb58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?ligand60 rdfs:subClassOf chebi:60240 . ?pfs63 up:annotation ?annotation64 . ?annotation64 faldo:begin ?pfsb65 ; faldo:end ?pfse66 ; up:ligand ?ligand67 ; rdf:type up:Binding_Site_Annotation . ?pfsb65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?ligand67 rdfs:subClassOf chebi:37565 . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; up:ligand ?ligand74 ; rdf:type up:Binding_Site_Annotation . ?pfsb72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?ligand74 rdfs:subClassOf chebi:37565 . ?pfs77 up:annotation ?annotation78 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; up:ligand ?ligand81 ; rdf:type up:Binding_Site_Annotation . ?pfsb79 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?ligand81 rdfs:subClassOf chebi:37565 . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; up:ligand ?ligand88 ; rdf:type up:Binding_Site_Annotation . ?pfsb86 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?ligand88 rdfs:subClassOf chebi:58210 . ?pfs91 up:annotation ?annotation92 . ?annotation92 faldo:begin ?pfsb93 ; faldo:end ?pfse94 ; up:ligand ?ligand95 ; rdf:type up:Binding_Site_Annotation . ?pfsb93 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?pfse94 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?ligand95 rdfs:subClassOf chebi:133980 . ?pfs98 up:annotation ?annotation99 . ?annotation99 faldo:begin ?pfsb100 ; faldo:end ?pfse101 ; up:ligand ?ligand102 ; rdf:type up:Binding_Site_Annotation . ?pfsb100 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?pfse101 faldo:position ?thisPositionOn104 ; rdf:type faldo:ExactPosition . ?ligand102 rdfs:subClassOf chebi:58210 . ?pfs105 up:annotation ?annotation106 . ?annotation106 faldo:begin ?pfsb107 ; faldo:end ?pfse108 ; up:ligand ?ligand109 ; rdf:type up:Binding_Site_Annotation . ?pfsb107 faldo:position ?thisPositionOn110 ; rdf:type faldo:ExactPosition . ?pfse108 faldo:position ?thisPositionOn111 ; rdf:type faldo:ExactPosition . ?ligand109 rdfs:subClassOf chebi:58210 . _:444383 a rdf:Statement ; up:attribution _:444341 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:444384 a rdf:Statement ; up:attribution _:444345 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart1 . _:444385 a rdf:Statement ; up:attribution _:444347 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart2 . _:444386 a rdf:Statement ; up:attribution _:444348 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:444387 a rdf:Statement ; up:attribution _:444349 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:444388 a rdf:Statement ; up:attribution _:444350 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:444389 a rdf:Statement ; up:attribution _:444351 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:444390 a rdf:Statement ; up:attribution _:444352 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:444391 a rdf:Statement ; up:attribution _:444353 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:444392 a rdf:Statement ; up:attribution _:444354 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:444393 a rdf:Statement ; up:attribution _:444355 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:444394 a rdf:Statement ; up:attribution _:444356 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:342 . _:444395 a rdf:Statement ; up:attribution _:444357 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:444396 a rdf:Statement ; up:attribution _:444358 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:444397 a rdf:Statement ; up:attribution _:444359 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:464 . _:444398 a rdf:Statement ; up:attribution _:444360 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:444399 a rdf:Statement ; up:attribution _:444361 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:511 . _:444400 a rdf:Statement ; up:attribution _:444362 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:444401 a rdf:Statement ; up:attribution _:444363 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:444402 a rdf:Statement ; up:attribution _:444364 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:630 . _:444403 a rdf:Statement ; up:attribution _:444365 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0052618 . _:444404 a rdf:Statement ; up:attribution _:444366 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0052619 . _:444405 a rdf:Statement ; up:attribution _:444367 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0052890 . _:444406 a rdf:Statement ; up:attribution _:444368 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0052645 . _:444407 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:444408 a rdf:Statement ; up:attribution _:444369 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:444409 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:444410 a rdf:Statement ; up:attribution _:444370 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:444411 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:444412 a rdf:Statement ; up:attribution _:444371 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:444413 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:444414 a rdf:Statement ; up:attribution _:444372 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:444415 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:444416 a rdf:Statement ; up:attribution _:444373 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:444417 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:444418 a rdf:Statement ; up:attribution _:444374 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:444419 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:444420 a rdf:Statement ; up:attribution _:444375 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:444421 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:444422 a rdf:Statement ; up:attribution _:444376 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:444423 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:444424 a rdf:Statement ; up:attribution _:444377 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:444425 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:444426 a rdf:Statement ; up:attribution _:444378 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:444427 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:444428 a rdf:Statement ; up:attribution _:444379 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:444429 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs91 ; rdf:predicate up:annotation ; rdf:object ?annotation92 . _:444430 a rdf:Statement ; up:attribution _:444380 ; rdf:subject ?pfs91 ; rdf:predicate up:annotation ; rdf:object ?annotation92 . _:444431 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs98 ; rdf:predicate up:annotation ; rdf:object ?annotation99 . _:444432 a rdf:Statement ; up:attribution _:444381 ; rdf:subject ?pfs98 ; rdf:predicate up:annotation ; rdf:object ?annotation99 . _:444433 a rdf:Statement ; up:source unirule:MF_01259 ; rdf:subject ?pfs105 ; rdf:predicate up:annotation ; rdf:object ?annotation106 . _:444434 a rdf:Statement ; up:attribution _:444382 ; rdf:subject ?pfs105 ; rdf:predicate up:annotation ; rdf:object ?annotation106 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01259 #Rule MF_01259 Created by:? on:2005-04-22 Modified by:Edouard de Castro on:2024-09-03 VALUES ?supertaxon112 {taxon:1763 taxon:1817 taxon:1883} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01259 . ?thisOrganism rdfs:subClassOf+ ?supertaxon112 . BIND(URI(CONCAT(STR(?this), '#MF_01259a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01259a1')) AS ?namedpart1) . BIND(URI(CONCAT(STR(?this), '#MF_01259a2')) AS ?namedpart2) . BIND(URI(CONCAT(STR(?this), '#MF_01259a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01259a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01259a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01259a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01259a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_01259a12')) AS ?annotation12) . BIND(URI(CONCAT(STR(?this), '#MF_01259a13')) AS ?annotation13) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3118 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3120 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259113 . ?templateMotifSequenceMatchRegionQ7TWV3118 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3119 . ?templateMotifSequenceMatchBeginQ7TWV3119 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3114 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3120 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259124 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259115 . ?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259123 . ?targetMotifMatchRegionMatchBeginMF_01259123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259116 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259124 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn20) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259113, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259113) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259113, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionQ7TWV3114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259115, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259115) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259115, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259115) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) . BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01259116) - 1) AS ?thisPositionOn21) . BIND(?this AS ?pfs1t127) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) . FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) . BIND(URI(CONCAT(STR(?this), '#MF_01259a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3133 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3135 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259128 . ?templateMotifSequenceMatchRegionQ7TWV3133 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3134 . ?templateMotifSequenceMatchBeginQ7TWV3134 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3129 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3135 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259139 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259130 . ?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259138 . ?targetMotifMatchRegionMatchBeginMF_01259138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259131 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259139 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259128, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259128) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259128, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionQ7TWV3129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259130, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259130) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259130, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259130) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) . BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01259131) - 1) AS ?thisPositionOn26) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn27) . BIND(?this AS ?pfs1t142) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) . FILTER ((BOUND(?thisPositionOn26) && BOUND(?thisPositionOn27))) . BIND(URI(CONCAT(STR(?this), '#MF_01259a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3148 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3150 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259143 . ?templateMotifSequenceMatchRegionQ7TWV3148 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3149 . ?templateMotifSequenceMatchBeginQ7TWV3149 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3144 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3150 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259154 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259145 . ?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259153 . ?targetMotifMatchRegionMatchBeginMF_01259153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259146 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259154 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259143, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259143) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259143, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionQ7TWV3144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259145, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259145, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01259146) - 1) AS ?thisPositionOn33) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259143, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259143) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259143, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionQ7TWV3144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259145, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259145, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_01259146) - 1) AS ?thisPositionOn34) . BIND(?this AS ?pfs1t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER (REGEX('[LIMV]P[ARNDCQEGHILKMFPSTWYVBZJUOX][IVEF]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) . BIND(URI(CONCAT(STR(?this), '#MF_01259a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259160 . ?templateMotifSequenceMatchRegionQ7TWV3165 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3166 . ?templateMotifSequenceMatchBeginQ7TWV3166 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3161 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3167 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259170 . ?targetMotifMatchRegionMatchBeginMF_01259170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259171 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259160, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259160) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259160, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionQ7TWV3161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259162, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259162) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259162, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259162) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01259163) - 1) AS ?thisPositionOn40) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259160, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259160) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259160, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionQ7TWV3161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259162, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259162) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259162, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259162) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01259163) - 1) AS ?thisPositionOn41) . BIND(?this AS ?pfs1t176) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]S[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) . BIND(URI(CONCAT(STR(?this), '#MF_01259a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3182 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3184 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259177 . ?templateMotifSequenceMatchRegionQ7TWV3182 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3183 . ?templateMotifSequenceMatchBeginQ7TWV3183 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3178 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3184 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259188 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259179 . ?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259187 . ?targetMotifMatchRegionMatchBeginMF_01259187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259180 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259188 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259177, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259177) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259177, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionQ7TWV3178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259179, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259179) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259179, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259179) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) . BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01259180) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs1t191) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01259a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3197 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3199 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259192 . ?templateMotifSequenceMatchRegionQ7TWV3197 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3198 . ?templateMotifSequenceMatchBeginQ7TWV3198 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3193 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3199 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259203 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259194 . ?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259202 . ?targetMotifMatchRegionMatchBeginMF_01259202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259195 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259203 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259192, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259192) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259192, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionQ7TWV3193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259194, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259194) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259194, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259194) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) . BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_01259195) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs1t206) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01259a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3212 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3214 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259207 . ?templateMotifSequenceMatchRegionQ7TWV3212 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3213 . ?templateMotifSequenceMatchBeginQ7TWV3213 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3208 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3214 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259218 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259209 . ?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259217 . ?targetMotifMatchRegionMatchBeginMF_01259217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259210 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259218 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259207, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259207) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259207, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionQ7TWV3208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259209, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259209) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259209, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259209) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) . BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_01259210) - 1) AS ?thisPositionOn61) . BIND(?thisPositionOn61 AS ?thisPositionOn62) . BIND(?this AS ?pfs1t221) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01259a57')) AS ?annotation57) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3227 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3229 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259222 . ?templateMotifSequenceMatchRegionQ7TWV3227 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3228 . ?templateMotifSequenceMatchBeginQ7TWV3228 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3223 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3229 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259233 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259224 . ?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259232 . ?targetMotifMatchRegionMatchBeginMF_01259232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259225 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259233 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259222, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259222) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259222, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionQ7TWV3223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259224, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259224) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259224, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259224) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) . BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01259225) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs1t236) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_01259a64')) AS ?annotation64) . BIND(?this AS ?pfs63) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3242 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3244 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259237 . ?templateMotifSequenceMatchRegionQ7TWV3242 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3243 . ?templateMotifSequenceMatchBeginQ7TWV3243 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3238 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3244 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259248 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259239 . ?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259247 . ?targetMotifMatchRegionMatchBeginMF_01259247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259240 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259248 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259237, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259237) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259237, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ7TWV3238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259239, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259239) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259239, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259239) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) . BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_01259240) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs1t251) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01259a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3257 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3259 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259252 . ?templateMotifSequenceMatchRegionQ7TWV3257 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3258 . ?templateMotifSequenceMatchBeginQ7TWV3258 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3253 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3259 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259263 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259254 . ?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259262 . ?targetMotifMatchRegionMatchBeginMF_01259262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259255 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259263 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259252, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259252) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259252, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionQ7TWV3253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259254, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259254) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259254, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259254) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) . BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_01259255) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs1t266) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01259a78')) AS ?annotation78) . BIND(?this AS ?pfs77) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3272 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3274 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259267 . ?templateMotifSequenceMatchRegionQ7TWV3272 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3273 . ?templateMotifSequenceMatchBeginQ7TWV3273 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3268 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3274 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259278 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259269 . ?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259277 . ?targetMotifMatchRegionMatchBeginMF_01259277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259270 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259278 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259267, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259267) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259267, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionQ7TWV3268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259269, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259269) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259269, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259269) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) . BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_01259270) - 1) AS ?thisPositionOn89) . BIND(?thisPositionOn89 AS ?thisPositionOn90) . BIND(?this AS ?pfs1t281) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'A')) . BIND(URI(CONCAT(STR(?this), '#MF_01259a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3287 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3289 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259282 . ?templateMotifSequenceMatchRegionQ7TWV3287 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3288 . ?templateMotifSequenceMatchBeginQ7TWV3288 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3283 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3289 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259293 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259284 . ?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259292 . ?targetMotifMatchRegionMatchBeginMF_01259292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259285 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259293 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259282, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259282) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259282, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionQ7TWV3283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259284, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259284) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259284, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259284) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) . BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_01259285) - 1) AS ?thisPositionOn96) . BIND(?thisPositionOn96 AS ?thisPositionOn97) . BIND(?this AS ?pfs1t296) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01259a92')) AS ?annotation92) . BIND(?this AS ?pfs91) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3302 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3304 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259297 . ?templateMotifSequenceMatchRegionQ7TWV3302 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3303 . ?templateMotifSequenceMatchBeginQ7TWV3303 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3298 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3304 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259308 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259299 . ?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259307 . ?targetMotifMatchRegionMatchBeginMF_01259307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259300 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259308 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259297, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259297) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259297, CONCAT('^(?:-*[^-]){', STR(((399 - ?templateMotifSequenceMatchBeginPositionQ7TWV3298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259299, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259299) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259299, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259299) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) . BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_01259300) - 1) AS ?thisPositionOn103) . BIND(?thisPositionOn103 AS ?thisPositionOn104) . BIND(?this AS ?pfs1t311) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) . FILTER (REGEX('[GS]', SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01259a99')) AS ?annotation99) . BIND(?this AS ?pfs98) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3317 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3319 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7TWV3MF_01259312 . ?templateMotifSequenceMatchRegionQ7TWV3317 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3318 . ?templateMotifSequenceMatchBeginQ7TWV3318 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3313 ; faldo:reference isoform:Q7TWV3-1 . ?templateMotifSequenceProfileAlignmentOperationQ7TWV3319 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . ?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259323 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259314 . ?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259322 . ?targetMotifMatchRegionMatchBeginMF_01259322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259315 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01259323 edam:has_input signature:MF_01259 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259312, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259312) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259312, CONCAT('^(?:-*[^-]){', STR(((436 - ?templateMotifSequenceMatchBeginPositionQ7TWV3313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259314, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259314) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259314, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259314) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) . BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_01259315) - 1) AS ?thisPositionOn110) . BIND(?thisPositionOn110 AS ?thisPositionOn111) . BIND(?this AS ?pfs1t326) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse108) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01259a106')) AS ?annotation106) . BIND(?this AS ?pfs105) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1763 . BIND(?this AS ?case14) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1763 . })) . BIND(?this AS ?case15) . } }