CONSTRUCT { _:447600 up:source unirule:MF_01263 . _:447601 up:source unirule:MF_01263 . _:447602 up:source unirule:MF_01263 . _:447603 up:source unirule:MF_01263 . _:447604 up:source unirule:MF_01263 . _:447605 up:source unirule:MF_01263 . _:447606 up:source unirule:MF_01263 . _:447607 up:source unirule:MF_01263 . _:447608 up:source unirule:MF_01263 . _:447609 up:source unirule:MF_01263 . _:447610 up:source unirule:MF_01263 . _:447611 up:source unirule:MF_01263 . _:447612 up:source unirule:MF_01263 . _:447613 up:source unirule:MF_01263 . _:447614 up:source unirule:MF_01263 . _:447615 up:source unirule:MF_01263 . _:447616 up:source unirule:MF_01263 . _:447617 up:source unirule:MF_01263 . _:447618 up:source unirule:MF_01263 . _:447619 up:source unirule:MF_01263 . _:447620 up:source unirule:MF_01263 . _:447621 up:source unirule:MF_01263 . _:447622 up:source unirule:MF_01263 . _:447623 up:source unirule:MF_01263 . _:447624 up:source unirule:MF_01263 . _:447625 up:source unirule:MF_01263 . _:447626 up:source unirule:MF_01263 . _:447627 up:source unirule:MF_01263 . _:447628 up:source unirule:MF_01263 . _:447629 up:source unirule:MF_01263 . _:447630 up:source unirule:MF_01263 . _:447631 up:source unirule:MF_01263 . _:447632 up:source unirule:MF_01263 . _:447633 up:source unirule:MF_01263 . _:447634 up:source unirule:MF_01263 . _:447635 up:source unirule:MF_01263 . _:447636 up:source unirule:MF_01263 . _:447637 up:source unirule:MF_01263 . _:447638 up:source unirule:MF_01263 . _:447639 up:source unirule:MF_01263 . _:447640 up:source unirule:MF_01263 . _:447641 up:source unirule:MF_01263 . _:447642 up:source unirule:MF_01263 . _:447643 up:source unirule:MF_01263 . _:447644 up:source unirule:MF_01263 . ?this up:alternativeName ?name1 , ?name2 , ?name3 , ?name4 , ?name5 ; up:annotation ?annotation7 , ?annotation8 , ?annotation10 , ?annotation12 , ?annotation13 , ?annotation14 , ?annotation15 ; up:classifiedWith GO:0000049 , GO:0000166 , GO:0000287 , GO:0001680 , GO:0004810 , GO:0005524 , keyword:460 , keyword:479 , keyword:547 , keyword:548 , keyword:67 , keyword:692 , keyword:694 , keyword:808 , keyword:819 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.72' ; up:fullName 'CCA-adding enzyme' ; rdf:type up:Structured_Name . ?name1 up:fullName 'CCA tRNA nucleotidyltransferase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'tRNA CCA-pyrophosphorylase' ; rdf:type up:Structured_Name . ?name3 up:fullName 'tRNA adenylyl-/cytidylyl- transferase' ; rdf:type up:Structured_Name . ?name4 up:fullName 'tRNA nucleotidyltransferase' ; rdf:type up:Structured_Name . ?name5 up:fullName 'tRNA-NT' ; rdf:type up:Structured_Name . ?gene6 skos:prefLabel 'cca' . ?annotation7 a up:Function_Annotation ; rdfs:comment "Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. tRNA 3'-terminal CCA addition is required both for tRNA processing and repair. Also involved in tRNA surveillance by mediating tandem CCA addition to generate a CCACCA at the 3' terminus of unstable tRNAs. While stable tRNAs receive only 3'-terminal CCA, unstable tRNAs are marked with CCACCA and rapidly degraded." . ?annotation8 up:activity ?activity9 ; rdf:type up:Catalytic_Activity_Annotation . ?activity9 up:catalyticActivity <http://rdf.rhea-db.org/14433>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.72>. ?annotation10 up:activity ?activity11 ; rdf:type up:Catalytic_Activity_Annotation . ?activity11 up:catalyticActivity <http://rdf.rhea-db.org/76235>. ?annotation12 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation13 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation14 a up:Annotation ; rdfs:comment 'A single active site specifically recognizes both ATP and CTP and is responsible for their addition.' . ?annotation15 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 3 subfamily.' . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:18420 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:18420 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:30616 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:37563 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:30616 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:37563 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:30616 . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:37563 . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; up:ligand ?ligand76 ; rdf:type up:Binding_Site_Annotation . ?pfsb74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand76 rdfs:subClassOf chebi:30616 . ?pfs79 up:annotation ?annotation80 . ?annotation80 faldo:begin ?pfsb81 ; faldo:end ?pfse82 ; up:ligand ?ligand83 ; rdf:type up:Binding_Site_Annotation . ?pfsb81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?ligand83 rdfs:subClassOf chebi:37563 . ?pfs86 up:annotation ?annotation87 . ?annotation87 faldo:begin ?pfsb88 ; faldo:end ?pfse89 ; up:ligand ?ligand90 ; rdf:type up:Binding_Site_Annotation . ?pfsb88 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?ligand90 rdfs:subClassOf chebi:30616 . ?pfs93 up:annotation ?annotation94 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; up:ligand ?ligand97 ; rdf:type up:Binding_Site_Annotation . ?pfsb95 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?ligand97 rdfs:subClassOf chebi:37563 . ?pfs100 up:annotation ?annotation101 . ?annotation101 faldo:begin ?pfsb102 ; faldo:end ?pfse103 ; up:ligand ?ligand104 ; rdf:type up:Binding_Site_Annotation . ?pfsb102 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?pfse103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?ligand104 rdfs:subClassOf chebi:30616 . ?pfs107 up:annotation ?annotation108 . ?annotation108 faldo:begin ?pfsb109 ; faldo:end ?pfse110 ; up:ligand ?ligand111 ; rdf:type up:Binding_Site_Annotation . ?pfsb109 faldo:position ?thisPositionOn112 ; rdf:type faldo:ExactPosition . ?pfse110 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?ligand111 rdfs:subClassOf chebi:37563 . ?pfs114 up:annotation ?annotation115 . ?annotation115 faldo:begin ?pfsb116 ; faldo:end ?pfse117 ; up:ligand ?ligand118 ; rdf:type up:Binding_Site_Annotation . ?pfsb116 faldo:position ?thisPositionOn119 ; rdf:type faldo:ExactPosition . ?pfse117 faldo:position ?thisPositionOn120 ; rdf:type faldo:ExactPosition . ?ligand118 rdfs:subClassOf chebi:30616 . ?pfs121 up:annotation ?annotation122 . ?annotation122 faldo:begin ?pfsb123 ; faldo:end ?pfse124 ; up:ligand ?ligand125 ; rdf:type up:Binding_Site_Annotation . ?pfsb123 faldo:position ?thisPositionOn126 ; rdf:type faldo:ExactPosition . ?pfse124 faldo:position ?thisPositionOn127 ; rdf:type faldo:ExactPosition . ?ligand125 rdfs:subClassOf chebi:37563 . _:447645 a rdf:Statement ; up:attribution _:447600 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:447646 a rdf:Statement ; up:attribution _:447601 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:447647 a rdf:Statement ; up:attribution _:447602 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:447648 a rdf:Statement ; up:attribution _:447603 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:447649 a rdf:Statement ; up:attribution _:447604 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name4 . _:447650 a rdf:Statement ; up:attribution _:447605 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name5 . _:447651 a rdf:Statement ; up:attribution _:447606 ; rdf:subject ?gene6 ; rdf:predicate up:encodedBy ; rdf:object ?gene6 . _:447652 a rdf:Statement ; up:attribution _:447607 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:447653 a rdf:Statement ; up:attribution _:447608 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:447654 a rdf:Statement ; up:attribution _:447609 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:447655 a rdf:Statement ; up:attribution _:447610 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:447656 a rdf:Statement ; up:attribution _:447611 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:447657 a rdf:Statement ; up:attribution _:447612 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:447658 a rdf:Statement ; up:attribution _:447613 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:447659 a rdf:Statement ; up:attribution _:447614 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:447660 a rdf:Statement ; up:attribution _:447615 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:447661 a rdf:Statement ; up:attribution _:447616 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:447662 a rdf:Statement ; up:attribution _:447617 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:447663 a rdf:Statement ; up:attribution _:447618 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:447664 a rdf:Statement ; up:attribution _:447619 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:692 . _:447665 a rdf:Statement ; up:attribution _:447620 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:447666 a rdf:Statement ; up:attribution _:447621 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:447667 a rdf:Statement ; up:attribution _:447622 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:447668 a rdf:Statement ; up:attribution _:447623 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000049 . _:447669 a rdf:Statement ; up:attribution _:447624 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000166 . _:447670 a rdf:Statement ; up:attribution _:447625 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:447671 a rdf:Statement ; up:attribution _:447626 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004810 . _:447672 a rdf:Statement ; up:attribution _:447627 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:447673 a rdf:Statement ; up:attribution _:447628 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0001680 . _:447674 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:447675 a rdf:Statement ; up:attribution _:447629 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:447676 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:447677 a rdf:Statement ; up:attribution _:447630 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:447678 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:447679 a rdf:Statement ; up:attribution _:447631 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:447680 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:447681 a rdf:Statement ; up:attribution _:447632 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:447682 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:447683 a rdf:Statement ; up:attribution _:447633 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:447684 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:447685 a rdf:Statement ; up:attribution _:447634 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:447686 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:447687 a rdf:Statement ; up:attribution _:447635 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:447688 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:447689 a rdf:Statement ; up:attribution _:447636 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:447690 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:447691 a rdf:Statement ; up:attribution _:447637 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:447692 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:447693 a rdf:Statement ; up:attribution _:447638 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:447694 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:447695 a rdf:Statement ; up:attribution _:447639 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:447696 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:447697 a rdf:Statement ; up:attribution _:447640 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:447698 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:447699 a rdf:Statement ; up:attribution _:447641 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:447700 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . _:447701 a rdf:Statement ; up:attribution _:447642 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . _:447702 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs114 ; rdf:predicate up:annotation ; rdf:object ?annotation115 . _:447703 a rdf:Statement ; up:attribution _:447643 ; rdf:subject ?pfs114 ; rdf:predicate up:annotation ; rdf:object ?annotation115 . _:447704 a rdf:Statement ; up:source unirule:MF_01263 ; rdf:subject ?pfs121 ; rdf:predicate up:annotation ; rdf:object ?annotation122 . _:447705 a rdf:Statement ; up:attribution _:447644 ; rdf:subject ?pfs121 ; rdf:predicate up:annotation ; rdf:object ?annotation122 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01263 #Rule MF_01263 Created by:? on:2005-07-29 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01263 . ?thisOrganism rdfs:subClassOf+ taxon:1239 . BIND(URI(CONCAT(STR(?this), '#MF_01263a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01263a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01263a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01263a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_01263a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_01263a5')) AS ?name5) . BIND(URI(CONCAT(STR(?this), '#MF_01263a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01263a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01263a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01263a12')) AS ?annotation12) . BIND(URI(CONCAT(STR(?this), '#MF_01263a13')) AS ?annotation13) . BIND(URI(CONCAT(STR(?this), '#MF_01263a14')) AS ?annotation14) . BIND(URI(CONCAT(STR(?this), '#MF_01263a15')) AS ?annotation15) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1133 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1135 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263128 . ?templateMotifSequenceMatchRegionQ7SIB1133 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1134 . ?templateMotifSequenceMatchBeginQ7SIB1134 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1129 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1135 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263139 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263130 . ?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263138 . ?targetMotifMatchRegionMatchBeginMF_01263138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263131 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263139 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263128, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263128) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263128, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionQ7SIB1129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263130, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263130) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263130, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263130) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) . BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01263131) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t142) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1148 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1150 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263143 . ?templateMotifSequenceMatchRegionQ7SIB1148 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1149 . ?templateMotifSequenceMatchBeginQ7SIB1149 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1144 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1150 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263154 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263145 . ?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263153 . ?targetMotifMatchRegionMatchBeginMF_01263153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263146 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263154 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263143, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263143) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263143, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionQ7SIB1144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263145, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263145, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01263146) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t157) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1163 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1165 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263158 . ?templateMotifSequenceMatchRegionQ7SIB1163 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1164 . ?templateMotifSequenceMatchBeginQ7SIB1164 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1159 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1165 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263169 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263160 . ?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263168 . ?targetMotifMatchRegionMatchBeginMF_01263168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263161 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263169 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263158, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263158) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263158, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionQ7SIB1159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263160, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263160) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263160, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263160) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) . BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01263161) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t172) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1178 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1180 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263173 . ?templateMotifSequenceMatchRegionQ7SIB1178 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1179 . ?templateMotifSequenceMatchBeginQ7SIB1179 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1174 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1180 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263184 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263175 . ?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263183 . ?targetMotifMatchRegionMatchBeginMF_01263183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263176 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263184 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263173, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263173) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263173, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionQ7SIB1174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263175, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263175) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263175, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263175) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) . BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01263176) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t187) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1193 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1195 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263188 . ?templateMotifSequenceMatchRegionQ7SIB1193 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1194 . ?templateMotifSequenceMatchBeginQ7SIB1194 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1189 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1195 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263199 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263190 . ?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263198 . ?targetMotifMatchRegionMatchBeginMF_01263198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263191 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263199 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263188, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263188) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263188, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionQ7SIB1189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263190, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263190) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263190, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263190) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) . BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_01263191) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t202) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1208 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1210 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263203 . ?templateMotifSequenceMatchRegionQ7SIB1208 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1209 . ?templateMotifSequenceMatchBeginQ7SIB1209 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1204 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1210 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263214 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263205 . ?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263213 . ?targetMotifMatchRegionMatchBeginMF_01263213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263206 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263214 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263203, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263203) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263203, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionQ7SIB1204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263205, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263205) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263205, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263205) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) . BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_01263206) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t217) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1223 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1225 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263218 . ?templateMotifSequenceMatchRegionQ7SIB1223 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1224 . ?templateMotifSequenceMatchBeginQ7SIB1224 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1219 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1225 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263229 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263220 . ?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263228 . ?targetMotifMatchRegionMatchBeginMF_01263228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263221 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263229 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263218, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263218) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263218, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ7SIB1219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263220, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263220) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263220, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263220) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) . BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_01263221) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t232) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch237 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1238 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1240 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263233 . ?templateMotifSequenceMatchRegionQ7SIB1238 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1239 . ?templateMotifSequenceMatchBeginQ7SIB1239 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1234 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1240 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch241 faldo:location ?targetMotifMatchRegionMatch242 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263244 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263235 . ?targetMotifMatchRegionMatch242 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263243 . ?targetMotifMatchRegionMatchBeginMF_01263243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263236 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263244 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263233, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263233) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263233, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ7SIB1234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1245) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263235, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263235) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263235, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263235) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), '')))), '[^-]', ''))) AS ?step2246) . BIND(((?step2246 + ?targetMotifMatchRegionMatchBeginPositionMF_01263236) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs1t247) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch252 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1253 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1255 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263248 . ?templateMotifSequenceMatchRegionQ7SIB1253 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1254 . ?templateMotifSequenceMatchBeginQ7SIB1254 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1249 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1255 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch256 faldo:location ?targetMotifMatchRegionMatch257 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263259 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263250 . ?targetMotifMatchRegionMatch257 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263258 . ?targetMotifMatchRegionMatchBeginMF_01263258 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263251 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263259 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263248, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263248) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263248, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionQ7SIB1249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263250, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263250) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263250, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263250) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) . BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_01263251) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs1t262) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch267 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1268 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1270 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263263 . ?templateMotifSequenceMatchRegionQ7SIB1268 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1269 . ?templateMotifSequenceMatchBeginQ7SIB1269 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1264 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1270 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch271 faldo:location ?targetMotifMatchRegionMatch272 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263274 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263265 . ?targetMotifMatchRegionMatch272 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263273 . ?targetMotifMatchRegionMatchBeginMF_01263273 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263266 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263274 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263263, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263263) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263263, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionQ7SIB1264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263265, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263265) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263265, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263265) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) . BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_01263266) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs1t277) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a80')) AS ?annotation80) . BIND(?this AS ?pfs79) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch282 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1283 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1285 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263278 . ?templateMotifSequenceMatchRegionQ7SIB1283 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1284 . ?templateMotifSequenceMatchBeginQ7SIB1284 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1279 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1285 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch286 faldo:location ?targetMotifMatchRegionMatch287 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263289 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263280 . ?targetMotifMatchRegionMatch287 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263288 . ?targetMotifMatchRegionMatchBeginMF_01263288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263281 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263289 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263278, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263278) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263278, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionQ7SIB1279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263280, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263280) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263280, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263280) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) . BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_01263281) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs1t292) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a87')) AS ?annotation87) . BIND(?this AS ?pfs86) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch297 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1298 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1300 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263293 . ?templateMotifSequenceMatchRegionQ7SIB1298 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1299 . ?templateMotifSequenceMatchBeginQ7SIB1299 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1294 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1300 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch301 faldo:location ?targetMotifMatchRegionMatch302 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263304 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263295 . ?targetMotifMatchRegionMatch302 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263303 . ?targetMotifMatchRegionMatchBeginMF_01263303 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263296 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263304 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263293, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263293) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263293, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionQ7SIB1294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1305) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263295, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263295) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263295, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263295) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), '')))), '[^-]', ''))) AS ?step2306) . BIND(((?step2306 + ?targetMotifMatchRegionMatchBeginPositionMF_01263296) - 1) AS ?thisPositionOn98) . BIND(?thisPositionOn98 AS ?thisPositionOn99) . BIND(?this AS ?pfs1t307) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a94')) AS ?annotation94) . BIND(?this AS ?pfs93) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch312 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1313 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1315 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263308 . ?templateMotifSequenceMatchRegionQ7SIB1313 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1314 . ?templateMotifSequenceMatchBeginQ7SIB1314 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1309 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1315 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch316 faldo:location ?targetMotifMatchRegionMatch317 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263319 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263310 . ?targetMotifMatchRegionMatch317 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263318 . ?targetMotifMatchRegionMatchBeginMF_01263318 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263311 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263319 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263308, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263308) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263308, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionQ7SIB1309) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1320) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263310, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263310) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263310, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263310, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263310) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263310, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), '')))), '[^-]', ''))) AS ?step2321) . BIND(((?step2321 + ?targetMotifMatchRegionMatchBeginPositionMF_01263311) - 1) AS ?thisPositionOn105) . BIND(?thisPositionOn105 AS ?thisPositionOn106) . BIND(?this AS ?pfs1t322) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a101')) AS ?annotation101) . BIND(?this AS ?pfs100) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch327 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1328 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1330 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263323 . ?templateMotifSequenceMatchRegionQ7SIB1328 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1329 . ?templateMotifSequenceMatchBeginQ7SIB1329 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1324 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1330 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch331 faldo:location ?targetMotifMatchRegionMatch332 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263334 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263325 . ?targetMotifMatchRegionMatch332 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263333 . ?targetMotifMatchRegionMatchBeginMF_01263333 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263326 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263334 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263323, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263323) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263323, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionQ7SIB1324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1335) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263325, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263325) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263325, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263325) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), '')))), '[^-]', ''))) AS ?step2336) . BIND(((?step2336 + ?targetMotifMatchRegionMatchBeginPositionMF_01263326) - 1) AS ?thisPositionOn112) . BIND(?thisPositionOn112 AS ?thisPositionOn113) . BIND(?this AS ?pfs1t337) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a108')) AS ?annotation108) . BIND(?this AS ?pfs107) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch342 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1343 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1345 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263338 . ?templateMotifSequenceMatchRegionQ7SIB1343 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1344 . ?templateMotifSequenceMatchBeginQ7SIB1344 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1339 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1345 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch346 faldo:location ?targetMotifMatchRegionMatch347 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263349 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263340 . ?targetMotifMatchRegionMatch347 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263348 . ?targetMotifMatchRegionMatchBeginMF_01263348 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263341 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263349 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263338, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263338) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263338, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionQ7SIB1339) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1350) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263340, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263340) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1350), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263340, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263340) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1350), '}'), '')))), '[^-]', ''))) AS ?step2351) . BIND(((?step2351 + ?targetMotifMatchRegionMatchBeginPositionMF_01263341) - 1) AS ?thisPositionOn119) . BIND(?thisPositionOn119 AS ?thisPositionOn120) . BIND(?this AS ?pfs1t352) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a115')) AS ?annotation115) . BIND(?this AS ?pfs114) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch357 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1358 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1360 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ7SIB1MF_01263353 . ?templateMotifSequenceMatchRegionQ7SIB1358 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1359 . ?templateMotifSequenceMatchBeginQ7SIB1359 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1354 ; faldo:reference isoform:Q7SIB1-1 . ?templateMotifSequenceProfileAlignmentOperationQ7SIB1360 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . ?targetMotifMatch361 faldo:location ?targetMotifMatchRegionMatch362 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263364 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263355 . ?targetMotifMatchRegionMatch362 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263363 . ?targetMotifMatchRegionMatchBeginMF_01263363 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263356 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01263364 edam:has_input signature:MF_01263 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263353, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263353) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263353, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionQ7SIB1354) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1365) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263355, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263355) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263355, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263355) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), '')))), '[^-]', ''))) AS ?step2366) . BIND(((?step2366 + ?targetMotifMatchRegionMatchBeginPositionMF_01263356) - 1) AS ?thisPositionOn126) . BIND(?thisPositionOn126 AS ?thisPositionOn127) . BIND(?this AS ?pfs1t367) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn126, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01263a122')) AS ?annotation122) . BIND(?this AS ?pfs121) . } }