@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:461792 up:source unirule:MF_01289 . _:461793 up:source unirule:MF_01289 . _:461794 up:source unirule:MF_01289 . _:461795 up:source unirule:MF_01289 . _:461796 up:source unirule:MF_01289 . _:461797 up:source unirule:MF_01289 . _:461798 up:source unirule:MF_01289 . _:461799 up:source unirule:MF_01289 . _:461800 up:source unirule:MF_01289 . _:461801 up:source unirule:MF_01289 . _:461802 up:source unirule:MF_01289 . _:461803 up:source unirule:MF_01289 . _:461804 up:source unirule:MF_01289 . _:461805 up:source unirule:MF_01289 . _:461806 up:source unirule:MF_01289 . _:461807 up:source unirule:MF_01289 . _:461808 up:source unirule:MF_01289 . _:461809 up:source unirule:MF_01289 . _:461810 up:source unirule:MF_01289 . _:461811 up:source unirule:MF_01289 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0008869 , GO:0034194 , keyword:456 ; up:recommendedName ?name0 . ?name0 up:ecName '4.2.1.6' ; up:fullName 'D-galactonate dehydratase' ; up:shortName 'GalD' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'dgoD' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy-D-galactonate.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity ; up:enzymeClass . ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Carbohydrate acid metabolism; D-galactonate degradation; D-glyceraldehyde 3-phosphate and pyruvate from D-galactonate: step 1/3.' . ?annotation6 a up:Annotation ; rdfs:comment 'Reaction proceeds via an anti dehydration.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily.' . ?case8 up:classifiedWith GO:0000287 , keyword:460 , keyword:479 . ?pfs9 up:annotation ?annotation10 , ?annotation16 , ?annotation22 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:18420 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:18420 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:18420 . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor/acceptor' . ?pfsb30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor/acceptor' . ?pfsb36 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; rdf:type up:Site_Annotation ; rdfs:comment 'Increases basicity of active site His' . ?pfsb42 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; rdf:type up:Site_Annotation ; rdfs:comment 'Transition state stabilizer' . ?pfsb48 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . _:461812 a rdf:Statement ; up:attribution _:461792 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:461813 a rdf:Statement ; up:attribution _:461793 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:461814 a rdf:Statement ; up:attribution _:461794 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:461815 a rdf:Statement ; up:attribution _:461795 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:461816 a rdf:Statement ; up:attribution _:461796 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:461817 a rdf:Statement ; up:attribution _:461797 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:461818 a rdf:Statement ; up:attribution _:461798 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:461819 a rdf:Statement ; up:attribution _:461799 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:461820 a rdf:Statement ; up:attribution _:461800 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008869 . _:461821 a rdf:Statement ; up:attribution _:461801 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0034194 . _:461822 a rdf:Statement ; up:attribution _:461802 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:461823 a rdf:Statement ; up:attribution _:461803 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:461824 a rdf:Statement ; up:attribution _:461804 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:461825 a rdf:Statement ; up:source unirule:MF_01289 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:461826 a rdf:Statement ; up:attribution _:461805 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:461827 a rdf:Statement ; up:source unirule:MF_01289 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:461828 a rdf:Statement ; up:attribution _:461806 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:461829 a rdf:Statement ; up:source unirule:MF_01289 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:461830 a rdf:Statement ; up:attribution _:461807 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:461831 a rdf:Statement ; up:source unirule:MF_01289 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:461832 a rdf:Statement ; up:attribution _:461808 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:461833 a rdf:Statement ; up:source unirule:MF_01289 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:461834 a rdf:Statement ; up:attribution _:461809 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:461835 a rdf:Statement ; up:source unirule:MF_01289 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:461836 a rdf:Statement ; up:attribution _:461810 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:461837 a rdf:Statement ; up:source unirule:MF_01289 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:461838 a rdf:Statement ; up:attribution _:461811 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01289 #Rule MF_01289 Created by:? on:2008-09-19 Modified by:Edouard de Castro on:2023-01-26 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01289 . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(URI(CONCAT(STR(?this), '#MF_01289a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01289a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01289a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01289a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01289a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01289a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionQ6BF1757 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6BF1759 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ6BF17MF_0128952 . ?templateMotifSequenceMatchRegionQ6BF1757 faldo:begin ?templateMotifSequenceMatchBeginQ6BF1758 . ?templateMotifSequenceMatchBeginQ6BF1758 faldo:position ?templateMotifSequenceMatchBeginPositionQ6BF1753 ; faldo:reference isoform:Q6BF17-1 . ?templateMotifSequenceProfileAlignmentOperationQ6BF1759 edam:has_input signature:MF_01289 ; rdf:type edam:operation_0300 . ?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128963 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ6BF17MF_0128954 . ?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128962 . ?targetMotifMatchRegionMatchBeginMF_0128962 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128955 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0128963 edam:has_input signature:MF_01289 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_0128952, 1, (STRLEN(?templateMotifCigarQ6BF17MF_0128952) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_0128952, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionQ6BF1753) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) . BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0128955) - 1) AS ?thisPositionOn14) . BIND(?thisPositionOn14 AS ?thisPositionOn15) . BIND(?this AS ?pfs1t66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_0128952, 1, (STRLEN(?templateMotifCigarQ6BF17MF_0128952) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_0128952, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionQ6BF1753) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) . BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0128955) - 1) AS ?thisPositionOn20) . BIND(?thisPositionOn20 AS ?thisPositionOn21) . BIND(?this AS ?pfs1t69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'E')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_0128952, 1, (STRLEN(?templateMotifCigarQ6BF17MF_0128952) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_0128952, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionQ6BF1753) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) . BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0128955) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'E')) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionQ6BF1778 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6BF1780 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ6BF17MF_0128973 . ?templateMotifSequenceMatchRegionQ6BF1778 faldo:begin ?templateMotifSequenceMatchBeginQ6BF1779 . ?templateMotifSequenceMatchBeginQ6BF1779 faldo:position ?templateMotifSequenceMatchBeginPositionQ6BF1774 ; faldo:reference isoform:Q6BF17-1 . ?templateMotifSequenceProfileAlignmentOperationQ6BF1780 edam:has_input signature:MF_01289 ; rdf:type edam:operation_0300 . ?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128984 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ6BF17MF_0128975 . ?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128983 . ?targetMotifMatchRegionMatchBeginMF_0128983 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128976 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0128984 edam:has_input signature:MF_01289 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_0128973, 1, (STRLEN(?templateMotifCigarQ6BF17MF_0128973) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_0128973, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionQ6BF1774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128975, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128975) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128975, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128975) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) . BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0128976) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs2t87) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01289a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ6BF1793 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6BF1795 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ6BF17MF_0128988 . ?templateMotifSequenceMatchRegionQ6BF1793 faldo:begin ?templateMotifSequenceMatchBeginQ6BF1794 . ?templateMotifSequenceMatchBeginQ6BF1794 faldo:position ?templateMotifSequenceMatchBeginPositionQ6BF1789 ; faldo:reference isoform:Q6BF17-1 . ?templateMotifSequenceProfileAlignmentOperationQ6BF1795 edam:has_input signature:MF_01289 ; rdf:type edam:operation_0300 . ?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128999 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ6BF17MF_0128990 . ?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128998 . ?targetMotifMatchRegionMatchBeginMF_0128998 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128991 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0128999 edam:has_input signature:MF_01289 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_0128988, 1, (STRLEN(?templateMotifCigarQ6BF17MF_0128988) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_0128988, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionQ6BF1789) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128990, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128990) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128990, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128990, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128990) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128990, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) . BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0128991) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs2t102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01289a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionQ6BF17108 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6BF17110 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ6BF17MF_01289103 . ?templateMotifSequenceMatchRegionQ6BF17108 faldo:begin ?templateMotifSequenceMatchBeginQ6BF17109 . ?templateMotifSequenceMatchBeginQ6BF17109 faldo:position ?templateMotifSequenceMatchBeginPositionQ6BF17104 ; faldo:reference isoform:Q6BF17-1 . ?templateMotifSequenceProfileAlignmentOperationQ6BF17110 edam:has_input signature:MF_01289 ; rdf:type edam:operation_0300 . ?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01289114 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ6BF17MF_01289105 . ?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01289113 . ?targetMotifMatchRegionMatchBeginMF_01289113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01289106 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01289114 edam:has_input signature:MF_01289 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_01289103, 1, (STRLEN(?templateMotifCigarQ6BF17MF_01289103) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_01289103, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionQ6BF17104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_01289105, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_01289105) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_01289105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_01289105, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_01289105) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_01289105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) . BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01289106) - 1) AS ?thisPositionOn44) . BIND(?thisPositionOn44 AS ?thisPositionOn45) . BIND(?this AS ?pfs2t117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01289a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionQ6BF17123 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6BF17125 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ6BF17MF_01289118 . ?templateMotifSequenceMatchRegionQ6BF17123 faldo:begin ?templateMotifSequenceMatchBeginQ6BF17124 . ?templateMotifSequenceMatchBeginQ6BF17124 faldo:position ?templateMotifSequenceMatchBeginPositionQ6BF17119 ; faldo:reference isoform:Q6BF17-1 . ?templateMotifSequenceProfileAlignmentOperationQ6BF17125 edam:has_input signature:MF_01289 ; rdf:type edam:operation_0300 . ?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01289129 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ6BF17MF_01289120 . ?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01289128 . ?targetMotifMatchRegionMatchBeginMF_01289128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01289121 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01289129 edam:has_input signature:MF_01289 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_01289118, 1, (STRLEN(?templateMotifCigarQ6BF17MF_01289118) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_01289118, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionQ6BF17119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_01289120, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_01289120) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_01289120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_01289120, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_01289120) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_01289120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01289121) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs2t132) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01289a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag133) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag133, ?UNBOUND_VARIABLE) AS ?case8) . } """ . .