@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:492365 up:source unirule:MF_01364 . _:492366 up:source unirule:MF_01364 . _:492367 up:source unirule:MF_01364 . _:492368 up:source unirule:MF_01364 . _:492369 up:source unirule:MF_01364 . _:492370 up:source unirule:MF_01364 . _:492371 up:source unirule:MF_01364 . _:492372 up:source unirule:MF_01364 . _:492373 up:source unirule:MF_01364 . _:492374 up:source unirule:MF_01364 . _:492375 up:source unirule:MF_01364 . _:492376 up:source unirule:MF_01364 . _:492377 up:source unirule:MF_01364 . _:492378 up:source unirule:MF_01364 . _:492379 up:source unirule:MF_01364 . _:492380 up:source unirule:MF_01364 . _:492381 up:source unirule:MF_01364 . _:492382 up:source unirule:MF_01364 . ?this up:annotation ?annotation0 ; up:classifiedWith GO:0006412 , GO:0019843 , keyword:687 , keyword:689 , keyword:694 , keyword:699 . ?annotation0 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.' . ?case5 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 . ?pfs7 up:annotation ?annotation8 , ?annotation14 , ?annotation20 , ?annotation26 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; up:ligand ?ligand11 ; rdf:type up:Binding_Site_Annotation . ?pfsb9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?ligand11 rdfs:subClassOf chebi:29105 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:29105 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:29105 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:29105 . ?pfs32 up:annotation ?annotation33 , ?annotation39 , ?annotation45 , ?annotation51 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:29105 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf chebi:29105 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:29105 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf chebi:29105 . _:492383 a rdf:Statement ; up:attribution _:492365 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:492384 a rdf:Statement ; up:attribution _:492366 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:687 . _:492385 a rdf:Statement ; up:attribution _:492367 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:689 . _:492386 a rdf:Statement ; up:attribution _:492368 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:492387 a rdf:Statement ; up:attribution _:492369 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:699 . _:492388 a rdf:Statement ; up:attribution _:492370 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006412 . _:492389 a rdf:Statement ; up:attribution _:492371 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019843 . _:492390 a rdf:Statement ; up:attribution _:492372 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:492391 a rdf:Statement ; up:attribution _:492373 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:492392 a rdf:Statement ; up:attribution _:492374 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:492393 a rdf:Statement ; up:source unirule:MF_01364 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:492394 a rdf:Statement ; up:attribution _:492375 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:492395 a rdf:Statement ; up:source unirule:MF_01364 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:492396 a rdf:Statement ; up:attribution _:492376 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:492397 a rdf:Statement ; up:source unirule:MF_01364 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:492398 a rdf:Statement ; up:attribution _:492377 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:492399 a rdf:Statement ; up:source unirule:MF_01364 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:492400 a rdf:Statement ; up:attribution _:492378 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:492401 a rdf:Statement ; up:source unirule:MF_01364 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:492402 a rdf:Statement ; up:attribution _:492379 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:492403 a rdf:Statement ; up:source unirule:MF_01364 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:492404 a rdf:Statement ; up:attribution _:492380 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:492405 a rdf:Statement ; up:source unirule:MF_01364 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:492406 a rdf:Statement ; up:attribution _:492381 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:492407 a rdf:Statement ; up:source unirule:MF_01364 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:492408 a rdf:Statement ; up:attribution _:492382 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01364 #Rule MF_01364 Created by:? on:2006-11-24 Modified by:Andrea Auchincloss on:2023-09-22 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01364_B . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_00537 . })) . } UNION { ?this rdfs:seeAlso signature:MF_01364_B . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_00537 . })) . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01364_A . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_00537 . })) . } BIND(URI(CONCAT(STR(?this), '#MF_01364a0')) AS ?annotation0) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP2681662 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2681664 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26816MF_01364_A57 . ?templateMotifSequenceMatchRegionP2681662 faldo:begin ?templateMotifSequenceMatchBeginP2681663 . ?templateMotifSequenceMatchBeginP2681663 faldo:position ?templateMotifSequenceMatchBeginPositionP2681658 ; faldo:reference isoform:P26816-1 . ?templateMotifSequenceProfileAlignmentOperationP2681664 edam:has_input signature:MF_01364_A ; rdf:type edam:operation_0300 . ?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01364_A68 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26816MF_01364_A59 . ?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01364_A67 . ?targetMotifMatchRegionMatchBeginMF_01364_A67 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01364_A60 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01364_A68 edam:has_input signature:MF_01364_A ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_2) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26816MF_01364_A57, 1, (STRLEN(?templateMotifCigarP26816MF_01364_A57) - STRLEN(REPLACE(?templateMotifCigarP26816MF_01364_A57, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP2681658) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26816MF_01364_A59, 1, (STRLEN(?targetMotifMatchCigarP26816MF_01364_A59) - STRLEN(REPLACE(?targetMotifMatchCigarP26816MF_01364_A59, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26816MF_01364_A59, 1, (STRLEN(?targetMotifMatchCigarP26816MF_01364_A59) - STRLEN(REPLACE(?targetMotifMatchCigarP26816MF_01364_A59, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) . BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_01364_A60) - 1) AS ?thisPositionOn12) . BIND(?thisPositionOn12 AS ?thisPositionOn13) . BIND(?this AS ?pfs1t71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26816MF_01364_A57, 1, (STRLEN(?templateMotifCigarP26816MF_01364_A57) - STRLEN(REPLACE(?templateMotifCigarP26816MF_01364_A57, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP2681658) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26816MF_01364_A59, 1, (STRLEN(?targetMotifMatchCigarP26816MF_01364_A59) - STRLEN(REPLACE(?targetMotifMatchCigarP26816MF_01364_A59, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26816MF_01364_A59, 1, (STRLEN(?targetMotifMatchCigarP26816MF_01364_A59) - STRLEN(REPLACE(?targetMotifMatchCigarP26816MF_01364_A59, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) . BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_01364_A60) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26816MF_01364_A57, 1, (STRLEN(?templateMotifCigarP26816MF_01364_A57) - STRLEN(REPLACE(?templateMotifCigarP26816MF_01364_A57, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP2681658) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26816MF_01364_A59, 1, (STRLEN(?targetMotifMatchCigarP26816MF_01364_A59) - STRLEN(REPLACE(?targetMotifMatchCigarP26816MF_01364_A59, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26816MF_01364_A59, 1, (STRLEN(?targetMotifMatchCigarP26816MF_01364_A59) - STRLEN(REPLACE(?targetMotifMatchCigarP26816MF_01364_A59, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) . BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_01364_A60) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26816MF_01364_A57, 1, (STRLEN(?templateMotifCigarP26816MF_01364_A57) - STRLEN(REPLACE(?templateMotifCigarP26816MF_01364_A57, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP2681658) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26816MF_01364_A59, 1, (STRLEN(?targetMotifMatchCigarP26816MF_01364_A59) - STRLEN(REPLACE(?targetMotifMatchCigarP26816MF_01364_A59, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26816MF_01364_A59, 1, (STRLEN(?targetMotifMatchCigarP26816MF_01364_A59) - STRLEN(REPLACE(?targetMotifMatchCigarP26816MF_01364_A59, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) . BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_01364_A60) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs1t80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'C')) . BIND(?this AS ?pfs7) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP0DOY686 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DOY688 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0DOY6MF_01364_B81 . ?templateMotifSequenceMatchRegionP0DOY686 faldo:begin ?templateMotifSequenceMatchBeginP0DOY687 . ?templateMotifSequenceMatchBeginP0DOY687 faldo:position ?templateMotifSequenceMatchBeginPositionP0DOY682 ; faldo:reference isoform:P0DOY6-1 . ?templateMotifSequenceProfileAlignmentOperationP0DOY688 edam:has_input signature:MF_01364_B ; rdf:type edam:operation_0300 . ?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01364_B92 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0DOY6MF_01364_B83 . ?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01364_B91 . ?targetMotifMatchRegionMatchBeginMF_01364_B91 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01364_B84 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01364_B92 edam:has_input signature:MF_01364_B ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DOY6MF_01364_B81, 1, (STRLEN(?templateMotifCigarP0DOY6MF_01364_B81) - STRLEN(REPLACE(?templateMotifCigarP0DOY6MF_01364_B81, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP0DOY682) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DOY6MF_01364_B83, 1, (STRLEN(?targetMotifMatchCigarP0DOY6MF_01364_B83) - STRLEN(REPLACE(?targetMotifMatchCigarP0DOY6MF_01364_B83, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DOY6MF_01364_B83, 1, (STRLEN(?targetMotifMatchCigarP0DOY6MF_01364_B83) - STRLEN(REPLACE(?targetMotifMatchCigarP0DOY6MF_01364_B83, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) . BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_01364_B84) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs2t95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DOY6MF_01364_B81, 1, (STRLEN(?templateMotifCigarP0DOY6MF_01364_B81) - STRLEN(REPLACE(?templateMotifCigarP0DOY6MF_01364_B81, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP0DOY682) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DOY6MF_01364_B83, 1, (STRLEN(?targetMotifMatchCigarP0DOY6MF_01364_B83) - STRLEN(REPLACE(?targetMotifMatchCigarP0DOY6MF_01364_B83, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DOY6MF_01364_B83, 1, (STRLEN(?targetMotifMatchCigarP0DOY6MF_01364_B83) - STRLEN(REPLACE(?targetMotifMatchCigarP0DOY6MF_01364_B83, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_01364_B84) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs2t98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DOY6MF_01364_B81, 1, (STRLEN(?templateMotifCigarP0DOY6MF_01364_B81) - STRLEN(REPLACE(?templateMotifCigarP0DOY6MF_01364_B81, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP0DOY682) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DOY6MF_01364_B83, 1, (STRLEN(?targetMotifMatchCigarP0DOY6MF_01364_B83) - STRLEN(REPLACE(?targetMotifMatchCigarP0DOY6MF_01364_B83, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DOY6MF_01364_B83, 1, (STRLEN(?targetMotifMatchCigarP0DOY6MF_01364_B83) - STRLEN(REPLACE(?targetMotifMatchCigarP0DOY6MF_01364_B83, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_01364_B84) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs2t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DOY6MF_01364_B81, 1, (STRLEN(?templateMotifCigarP0DOY6MF_01364_B81) - STRLEN(REPLACE(?templateMotifCigarP0DOY6MF_01364_B81, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP0DOY682) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DOY6MF_01364_B83, 1, (STRLEN(?targetMotifMatchCigarP0DOY6MF_01364_B83) - STRLEN(REPLACE(?targetMotifMatchCigarP0DOY6MF_01364_B83, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DOY6MF_01364_B83, 1, (STRLEN(?targetMotifMatchCigarP0DOY6MF_01364_B83) - STRLEN(REPLACE(?targetMotifMatchCigarP0DOY6MF_01364_B83, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_01364_B84) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs2t104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'C')) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(?this AS ?case1) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case2) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1117 . BIND(?this AS ?case3) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2 . })) . BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag105) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag105, ?UNBOUND_VARIABLE) AS ?case5) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(?this AS ?case6) . } } """ . .