@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:565085 up:source unirule:MF_01561 . _:565086 up:source unirule:MF_01561 . _:565087 up:source unirule:MF_01561 . _:565088 up:source unirule:MF_01561 . _:565089 up:source unirule:MF_01561 . _:565090 up:source unirule:MF_01561 . _:565091 up:source unirule:MF_01561 . _:565092 up:source unirule:MF_01561 . _:565093 up:source unirule:MF_01561 . _:565094 up:source unirule:MF_01561 . _:565095 up:source unirule:MF_01561 . _:565096 up:source unirule:MF_01561 . _:565097 up:source unirule:MF_01561 . _:565098 up:source unirule:MF_01561 . _:565099 up:source unirule:MF_01561 . _:565100 up:source unirule:MF_01561 . _:565101 up:source unirule:MF_01561 . _:565102 up:source unirule:MF_01561 . ?this up:annotation ?annotation0 ; up:classifiedWith GO:0016791 , keyword:378 . ?annotation0 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the PHP family.' . ?case2 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 . ?case3 up:recommendedName ?name4 . ?name4 up:ecName '3.1.3.-' ; up:fullName 'Probable phosphatase YcdX' ; rdf:type up:Structured_Name . ?case5 up:recommendedName ?name6 . ?name6 up:ecName '3.1.3.-' ; up:fullName ?nameValue7 ; rdf:type up:Structured_Name . ?pfs8 up:annotation ?annotation9 , ?annotation15 , ?annotation21 , ?annotation27 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:29105 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:29105 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:29105 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:29105 . ?pfs33 up:annotation ?annotation34 , ?annotation40 , ?annotation46 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:29105 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf chebi:29105 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; up:ligand ?ligand49 ; rdf:type up:Binding_Site_Annotation . ?pfsb47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand49 rdfs:subClassOf chebi:29105 . ?pfs52 up:annotation ?annotation53 , ?annotation59 , ?annotation65 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf chebi:29105 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:29105 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; up:ligand ?ligand68 ; rdf:type up:Binding_Site_Annotation . ?pfsb66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand68 rdfs:subClassOf chebi:29105 . _:565103 a rdf:Statement ; up:attribution _:565085 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:565104 a rdf:Statement ; up:attribution _:565086 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:565105 a rdf:Statement ; up:attribution _:565087 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016791 . _:565106 a rdf:Statement ; up:attribution _:565088 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:565107 a rdf:Statement ; up:attribution _:565089 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:565108 a rdf:Statement ; up:attribution _:565090 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:565109 a rdf:Statement ; up:attribution _:565091 ; rdf:subject ?case3 ; rdf:predicate up:recommendedName ; rdf:object ?name4 . _:565110 a rdf:Statement ; up:attribution _:565092 ; rdf:subject ?case5 ; rdf:predicate up:recommendedName ; rdf:object ?name6 . _:565111 a rdf:Statement ; up:source unirule:MF_01561 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:565112 a rdf:Statement ; up:attribution _:565093 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:565113 a rdf:Statement ; up:source unirule:MF_01561 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:565114 a rdf:Statement ; up:attribution _:565094 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:565115 a rdf:Statement ; up:source unirule:MF_01561 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:565116 a rdf:Statement ; up:attribution _:565095 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:565117 a rdf:Statement ; up:source unirule:MF_01561 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:565118 a rdf:Statement ; up:attribution _:565096 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:565119 a rdf:Statement ; up:source unirule:MF_01561 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:565120 a rdf:Statement ; up:attribution _:565097 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:565121 a rdf:Statement ; up:source unirule:MF_01561 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:565122 a rdf:Statement ; up:attribution _:565098 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:565123 a rdf:Statement ; up:source unirule:MF_01561 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:565124 a rdf:Statement ; up:attribution _:565099 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:565125 a rdf:Statement ; up:source unirule:MF_01561 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:565126 a rdf:Statement ; up:attribution _:565100 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:565127 a rdf:Statement ; up:source unirule:MF_01561 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:565128 a rdf:Statement ; up:attribution _:565101 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:565129 a rdf:Statement ; up:source unirule:MF_01561 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:565130 a rdf:Statement ; up:attribution _:565102 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01561 #Rule MF_01561 Created by:? on:2006-03-06 Modified by:Edouard de Castro on:2023-01-26 VALUES ?supertaxon71 {taxon:186802 taxon:68295 taxon:1224} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01561 . ?thisOrganism rdfs:subClassOf+ ?supertaxon71 . BIND(URI(CONCAT(STR(?this), '#MF_01561a0')) AS ?annotation0) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionP7591477 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7591479 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP75914MF_0156172 . ?templateMotifSequenceMatchRegionP7591477 faldo:begin ?templateMotifSequenceMatchBeginP7591478 . ?templateMotifSequenceMatchBeginP7591478 faldo:position ?templateMotifSequenceMatchBeginPositionP7591473 ; faldo:reference isoform:P75914-1 . ?templateMotifSequenceProfileAlignmentOperationP7591479 edam:has_input signature:MF_01561 ; rdf:type edam:operation_0300 . ?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0156183 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP75914MF_0156174 . ?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0156182 . ?targetMotifMatchRegionMatchBeginMF_0156182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0156175 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0156183 edam:has_input signature:MF_01561 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75914MF_0156172, 1, (STRLEN(?templateMotifCigarP75914MF_0156172) - STRLEN(REPLACE(?templateMotifCigarP75914MF_0156172, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP7591473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75914MF_0156174, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156174) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75914MF_0156174, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156174) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) . BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0156175) - 1) AS ?thisPositionOn13) . BIND(?thisPositionOn13 AS ?thisPositionOn14) . BIND(?this AS ?pfs1t86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75914MF_0156172, 1, (STRLEN(?templateMotifCigarP75914MF_0156172) - STRLEN(REPLACE(?templateMotifCigarP75914MF_0156172, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP7591473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75914MF_0156174, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156174) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75914MF_0156174, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156174) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) . BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0156175) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75914MF_0156172, 1, (STRLEN(?templateMotifCigarP75914MF_0156172) - STRLEN(REPLACE(?templateMotifCigarP75914MF_0156172, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP7591473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75914MF_0156174, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156174) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75914MF_0156174, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156174) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) . BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0156175) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'E')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75914MF_0156172, 1, (STRLEN(?templateMotifCigarP75914MF_0156172) - STRLEN(REPLACE(?templateMotifCigarP75914MF_0156172, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP7591473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75914MF_0156174, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156174) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75914MF_0156174, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156174) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) . BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0156175) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'D')) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP75914101 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP75914103 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP75914MF_0156196 . ?templateMotifSequenceMatchRegionP75914101 faldo:begin ?templateMotifSequenceMatchBeginP75914102 . ?templateMotifSequenceMatchBeginP75914102 faldo:position ?templateMotifSequenceMatchBeginPositionP7591497 ; faldo:reference isoform:P75914-1 . ?templateMotifSequenceProfileAlignmentOperationP75914103 edam:has_input signature:MF_01561 ; rdf:type edam:operation_0300 . ?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01561107 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP75914MF_0156198 . ?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01561106 . ?targetMotifMatchRegionMatchBeginMF_01561106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0156199 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01561107 edam:has_input signature:MF_01561 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_2) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75914MF_0156196, 1, (STRLEN(?templateMotifCigarP75914MF_0156196) - STRLEN(REPLACE(?templateMotifCigarP75914MF_0156196, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP7591497) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75914MF_0156198, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156198) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75914MF_0156198, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156198) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) . BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0156199) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs2t110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75914MF_0156196, 1, (STRLEN(?templateMotifCigarP75914MF_0156196) - STRLEN(REPLACE(?templateMotifCigarP75914MF_0156196, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP7591497) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75914MF_0156198, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156198) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75914MF_0156198, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156198) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_0156199) - 1) AS ?thisPositionOn44) . BIND(?thisPositionOn44 AS ?thisPositionOn45) . BIND(?this AS ?pfs2t113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75914MF_0156196, 1, (STRLEN(?templateMotifCigarP75914MF_0156196) - STRLEN(REPLACE(?templateMotifCigarP75914MF_0156196, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionP7591497) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75914MF_0156198, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156198) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75914MF_0156198, 1, (STRLEN(?targetMotifMatchCigarP75914MF_0156198) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_0156198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_0156199) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs2t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP75914122 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP75914124 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP75914MF_01561117 . ?templateMotifSequenceMatchRegionP75914122 faldo:begin ?templateMotifSequenceMatchBeginP75914123 . ?templateMotifSequenceMatchBeginP75914123 faldo:position ?templateMotifSequenceMatchBeginPositionP75914118 ; faldo:reference isoform:P75914-1 . ?templateMotifSequenceProfileAlignmentOperationP75914124 edam:has_input signature:MF_01561 ; rdf:type edam:operation_0300 . ?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01561128 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP75914MF_01561119 . ?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01561127 . ?targetMotifMatchRegionMatchBeginMF_01561127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01561120 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01561128 edam:has_input signature:MF_01561 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_3) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75914MF_01561117, 1, (STRLEN(?templateMotifCigarP75914MF_01561117) - STRLEN(REPLACE(?templateMotifCigarP75914MF_01561117, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP75914118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75914MF_01561119, 1, (STRLEN(?targetMotifMatchCigarP75914MF_01561119) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_01561119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75914MF_01561119, 1, (STRLEN(?targetMotifMatchCigarP75914MF_01561119) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_01561119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01561120) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs3t131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'E')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75914MF_01561117, 1, (STRLEN(?templateMotifCigarP75914MF_01561117) - STRLEN(REPLACE(?templateMotifCigarP75914MF_01561117, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionP75914118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75914MF_01561119, 1, (STRLEN(?targetMotifMatchCigarP75914MF_01561119) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_01561119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75914MF_01561119, 1, (STRLEN(?targetMotifMatchCigarP75914MF_01561119) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_01561119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01561120) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs3t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75914MF_01561117, 1, (STRLEN(?templateMotifCigarP75914MF_01561117) - STRLEN(REPLACE(?templateMotifCigarP75914MF_01561117, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP75914118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75914MF_01561119, 1, (STRLEN(?targetMotifMatchCigarP75914MF_01561119) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_01561119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75914MF_01561119, 1, (STRLEN(?targetMotifMatchCigarP75914MF_01561119) - STRLEN(REPLACE(?targetMotifMatchCigarP75914MF_01561119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) . BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_01561120) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs3t137) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'H')) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:91347 . BIND(?this AS ?case1) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag138) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2) || BOUND(?tagFTGRP_3)), ?caseWithTag138, ?UNBOUND_VARIABLE) AS ?case2) . OPTIONAL { ?this a up:Protein . VALUES ?supertaxon139 {taxon:561 taxon:620 taxon:590} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon139 . BIND(?this AS ?case3) . BIND(URI(CONCAT(STR(?this), '#MF_01561a4')) AS ?name4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon140 {taxon:561 taxon:620 taxon:590} ?thisOrganism rdfs:subClassOf+ ?supertaxon140 . })) . BIND(?this AS ?case5) . BIND(URI(CONCAT(STR(?this), '#MF_01561a6')) AS ?name6) . OPTIONAL { ?this up:encodedBy ?gene144 . ?gene144 up:locusName ?geneLocus142 . } OPTIONAL { ?this up:encodedBy ?gene144 . ?gene144 up:orfName ?geneOrf143 . } BIND(IF(BOUND(?geneLocus142), ?geneLocus142, ?geneOrf143) AS ?part141) . BIND(CONCAT('Probable phosphatase ', ?part141) AS ?nameValue7) . } } """ . .