@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:574830 up:source unirule:MF_01589 . _:574831 up:source unirule:MF_01589 . _:574832 up:source unirule:MF_01589 . _:574833 up:source unirule:MF_01589 . _:574834 up:source unirule:MF_01589 . _:574835 up:source unirule:MF_01589 . _:574836 up:source unirule:MF_01589 . _:574837 up:source unirule:MF_01589 . _:574838 up:source unirule:MF_01589 . _:574839 up:source unirule:MF_01589 . _:574840 up:source unirule:MF_01589 . _:574841 up:source unirule:MF_01589 . _:574842 up:source unirule:MF_01589 . _:574843 up:source unirule:MF_01589 . _:574844 up:source unirule:MF_01589 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 ; up:classifiedWith GO:0016743 , GO:1904047 , keyword:808 , keyword:949 ; up:recommendedName ?name0 . ?name0 up:ecName '2.1.3.-' ; up:fullName 'Carboxy-S-adenosyl-L-methionine synthase' ; up:shortName 'Cx-SAM synthase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'cmoA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. Cx-SAM synthase family.' . ?pfs7 up:annotation ?annotation8 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; up:ligand ?ligand11 ; rdf:type up:Binding_Site_Annotation . ?pfsb9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?ligand11 rdfs:subClassOf chebi:59789 . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:59789 . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:59789 . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:59789 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:59789 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf chebi:59789 . _:574845 a rdf:Statement ; up:attribution _:574830 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:574846 a rdf:Statement ; up:attribution _:574831 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:574847 a rdf:Statement ; up:attribution _:574832 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:574848 a rdf:Statement ; up:attribution _:574833 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:574849 a rdf:Statement ; up:attribution _:574834 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:574850 a rdf:Statement ; up:attribution _:574835 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:574851 a rdf:Statement ; up:attribution _:574836 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:574852 a rdf:Statement ; up:attribution _:574837 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016743 . _:574853 a rdf:Statement ; up:attribution _:574838 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:1904047 . _:574854 a rdf:Statement ; up:source unirule:MF_01589 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:574855 a rdf:Statement ; up:attribution _:574839 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:574856 a rdf:Statement ; up:source unirule:MF_01589 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:574857 a rdf:Statement ; up:attribution _:574840 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:574858 a rdf:Statement ; up:source unirule:MF_01589 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:574859 a rdf:Statement ; up:attribution _:574841 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:574860 a rdf:Statement ; up:source unirule:MF_01589 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:574861 a rdf:Statement ; up:attribution _:574842 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:574862 a rdf:Statement ; up:source unirule:MF_01589 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:574863 a rdf:Statement ; up:attribution _:574843 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:574864 a rdf:Statement ; up:source unirule:MF_01589 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:574865 a rdf:Statement ; up:attribution _:574844 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01589 #Rule MF_01589 Created by:? on:2007-11-29 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01589 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_01589a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01589a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01589a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01589a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionP7629054 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7629056 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76290MF_0158949 . ?templateMotifSequenceMatchRegionP7629054 faldo:begin ?templateMotifSequenceMatchBeginP7629055 . ?templateMotifSequenceMatchBeginP7629055 faldo:position ?templateMotifSequenceMatchBeginPositionP7629050 ; faldo:reference isoform:P76290-1 . ?templateMotifSequenceProfileAlignmentOperationP7629056 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . ?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0158960 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76290MF_0158951 . ?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0158959 . ?targetMotifMatchRegionMatchBeginMF_0158959 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0158952 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0158960 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158949, 1, (STRLEN(?templateMotifCigarP76290MF_0158949) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158949, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP7629050) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158951, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158951) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158951, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158951) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) . BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0158952) - 1) AS ?thisPositionOn12) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158949, 1, (STRLEN(?templateMotifCigarP76290MF_0158949) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158949, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP7629050) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158951, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158951) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158951, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158951) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) . BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0158952) - 1) AS ?thisPositionOn13) . BIND(?this AS ?pfs1t65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) . BIND(URI(CONCAT(STR(?this), '#MF_01589a8')) AS ?annotation8) . BIND(?this AS ?pfs7) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP7629071 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7629073 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76290MF_0158966 . ?templateMotifSequenceMatchRegionP7629071 faldo:begin ?templateMotifSequenceMatchBeginP7629072 . ?templateMotifSequenceMatchBeginP7629072 faldo:position ?templateMotifSequenceMatchBeginPositionP7629067 ; faldo:reference isoform:P76290-1 . ?templateMotifSequenceProfileAlignmentOperationP7629073 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . ?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0158977 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76290MF_0158968 . ?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0158976 . ?targetMotifMatchRegionMatchBeginMF_0158976 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0158969 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0158977 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158966, 1, (STRLEN(?templateMotifCigarP76290MF_0158966) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158966, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP7629067) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158968, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158968) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158968, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158968) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) . BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0158969) - 1) AS ?thisPositionOn19) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158966, 1, (STRLEN(?templateMotifCigarP76290MF_0158966) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158966, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP7629067) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158968, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158968) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158968, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158968) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) . BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0158969) - 1) AS ?thisPositionOn20) . BIND(?this AS ?pfs1t82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)) = 'DN')) . BIND(URI(CONCAT(STR(?this), '#MF_01589a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP7629088 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7629090 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76290MF_0158983 . ?templateMotifSequenceMatchRegionP7629088 faldo:begin ?templateMotifSequenceMatchBeginP7629089 . ?templateMotifSequenceMatchBeginP7629089 faldo:position ?templateMotifSequenceMatchBeginPositionP7629084 ; faldo:reference isoform:P76290-1 . ?templateMotifSequenceProfileAlignmentOperationP7629090 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . ?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0158994 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76290MF_0158985 . ?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0158993 . ?targetMotifMatchRegionMatchBeginMF_0158993 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0158986 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0158994 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158983, 1, (STRLEN(?templateMotifCigarP76290MF_0158983) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158983, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP7629084) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158985, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158985) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158985, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158985) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) . BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0158986) - 1) AS ?thisPositionOn26) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158983, 1, (STRLEN(?templateMotifCigarP76290MF_0158983) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158983, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP7629084) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158985, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158985) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158985, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158985) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) . BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0158986) - 1) AS ?thisPositionOn27) . BIND(?this AS ?pfs1t99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER (REGEX('D[ILV]', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) . BIND(URI(CONCAT(STR(?this), '#MF_01589a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP76290105 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76290107 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76290MF_01589100 . ?templateMotifSequenceMatchRegionP76290105 faldo:begin ?templateMotifSequenceMatchBeginP76290106 . ?templateMotifSequenceMatchBeginP76290106 faldo:position ?templateMotifSequenceMatchBeginPositionP76290101 ; faldo:reference isoform:P76290-1 . ?templateMotifSequenceProfileAlignmentOperationP76290107 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . ?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01589111 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76290MF_01589102 . ?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01589110 . ?targetMotifMatchRegionMatchBeginMF_01589110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01589103 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01589111 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_01589100, 1, (STRLEN(?templateMotifCigarP76290MF_01589100) - STRLEN(REPLACE(?templateMotifCigarP76290MF_01589100, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP76290101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_01589102, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589102) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_01589102, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589102) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) . BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01589103) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t114) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01589a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP76290120 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76290122 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76290MF_01589115 . ?templateMotifSequenceMatchRegionP76290120 faldo:begin ?templateMotifSequenceMatchBeginP76290121 . ?templateMotifSequenceMatchBeginP76290121 faldo:position ?templateMotifSequenceMatchBeginPositionP76290116 ; faldo:reference isoform:P76290-1 . ?templateMotifSequenceProfileAlignmentOperationP76290122 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . ?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01589126 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76290MF_01589117 . ?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01589125 . ?targetMotifMatchRegionMatchBeginMF_01589125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01589118 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01589126 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_01589115, 1, (STRLEN(?templateMotifCigarP76290MF_01589115) - STRLEN(REPLACE(?templateMotifCigarP76290MF_01589115, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP76290116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_01589117, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589117) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_01589117, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589117) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) . BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01589118) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t129) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01589a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP76290135 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76290137 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76290MF_01589130 . ?templateMotifSequenceMatchRegionP76290135 faldo:begin ?templateMotifSequenceMatchBeginP76290136 . ?templateMotifSequenceMatchBeginP76290136 faldo:position ?templateMotifSequenceMatchBeginPositionP76290131 ; faldo:reference isoform:P76290-1 . ?templateMotifSequenceProfileAlignmentOperationP76290137 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . ?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01589141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76290MF_01589132 . ?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01589140 . ?targetMotifMatchRegionMatchBeginMF_01589140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01589133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01589141 edam:has_input signature:MF_01589 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_01589130, 1, (STRLEN(?templateMotifCigarP76290MF_01589130) - STRLEN(REPLACE(?templateMotifCigarP76290MF_01589130, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP76290131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_01589132, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589132) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_01589132, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589132) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01589133) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs1t144) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01589a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(?this AS ?case6) . } } """ . .