@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:582733 up:source unirule:MF_01611 . _:582734 up:source unirule:MF_01611 . _:582735 up:source unirule:MF_01611 . _:582736 up:source unirule:MF_01611 . _:582737 up:source unirule:MF_01611 . _:582738 up:source unirule:MF_01611 . _:582739 up:source unirule:MF_01611 . _:582740 up:source unirule:MF_01611 . _:582741 up:source unirule:MF_01611 . _:582742 up:source unirule:MF_01611 . _:582743 up:source unirule:MF_01611 . _:582744 up:source unirule:MF_01611 . _:582745 up:source unirule:MF_01611 . _:582746 up:source unirule:MF_01611 . _:582747 up:source unirule:MF_01611 . _:582748 up:source unirule:MF_01611 . _:582749 up:source unirule:MF_01611 . _:582750 up:source unirule:MF_01611 . _:582751 up:source unirule:MF_01611 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0016841 , keyword:456 ; up:recommendedName ?name0 . ?name0 up:ecName '4.3.1.32' ; up:fullName '7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'FO synthase subunit 1' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'cofG' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) from 5-amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity ; up:enzymeClass . ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; coenzyme F0 biosynthesis.' . ?annotation7 a up:Subunit_Annotation ; rdfs:comment 'The FO synthase complex consists of two subunits, CofG and CofH.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the radical SAM superfamily. CofG family.' . ?case9 up:classifiedWith GO:0005506 , keyword:408 , keyword:411 , keyword:479 , keyword:4 , keyword:949 . ?pfs10 up:annotation ?annotation11 , ?annotation17 , ?annotation23 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:49883 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:49883 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:49883 . _:582752 a rdf:Statement ; up:attribution _:582733 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:582753 a rdf:Statement ; up:attribution _:582734 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:582754 a rdf:Statement ; up:attribution _:582735 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:582755 a rdf:Statement ; up:attribution _:582736 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:582756 a rdf:Statement ; up:attribution _:582737 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:582757 a rdf:Statement ; up:attribution _:582738 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:582758 a rdf:Statement ; up:attribution _:582739 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:582759 a rdf:Statement ; up:attribution _:582740 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:582760 a rdf:Statement ; up:attribution _:582741 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:582761 a rdf:Statement ; up:attribution _:582742 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016841 . _:582762 a rdf:Statement ; up:attribution _:582743 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:4 . _:582763 a rdf:Statement ; up:attribution _:582744 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:582764 a rdf:Statement ; up:attribution _:582745 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:582765 a rdf:Statement ; up:attribution _:582746 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:582766 a rdf:Statement ; up:attribution _:582747 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:582767 a rdf:Statement ; up:attribution _:582748 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005506 . _:582768 a rdf:Statement ; up:source unirule:MF_01611 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:582769 a rdf:Statement ; up:attribution _:582749 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:582770 a rdf:Statement ; up:source unirule:MF_01611 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:582771 a rdf:Statement ; up:attribution _:582750 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:582772 a rdf:Statement ; up:source unirule:MF_01611 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:582773 a rdf:Statement ; up:attribution _:582751 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01611 #Rule MF_01611 Created by:? on:2005-06-13 Modified by:Catherine Rivoire on:2024-10-08 VALUES ?supertaxon29 {taxon:1117 taxon:3366610} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01611 . ?thisOrganism rdfs:subClassOf+ ?supertaxon29 . BIND(URI(CONCAT(STR(?this), '#MF_01611a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01611a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01611a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01611a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01611a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01611a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01611a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch34 faldo:location ?templateMotifSequenceMatchRegionQ5788835 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5788837 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57888MF_0161130 . ?templateMotifSequenceMatchRegionQ5788835 faldo:begin ?templateMotifSequenceMatchBeginQ5788836 . ?templateMotifSequenceMatchBeginQ5788836 faldo:position ?templateMotifSequenceMatchBeginPositionQ5788831 ; faldo:reference isoform:Q57888-1 . ?templateMotifSequenceProfileAlignmentOperationQ5788837 edam:has_input signature:MF_01611 ; rdf:type edam:operation_0300 . ?targetMotifMatch38 faldo:location ?targetMotifMatchRegionMatch39 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57888MF_0161132 . ?targetMotifMatchRegionMatch39 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161140 . ?targetMotifMatchRegionMatchBeginMF_0161140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0161141 edam:has_input signature:MF_01611 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57888MF_0161130, 1, (STRLEN(?templateMotifCigarQ57888MF_0161130) - STRLEN(REPLACE(?templateMotifCigarQ57888MF_0161130, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionQ5788831) + 1)), '}'), '')))), '[a-z]', '')) AS ?step142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), '')))), '[^-]', ''))) AS ?step243) . BIND(((?step243 + ?targetMotifMatchRegionMatchBeginPositionMF_0161133) - 1) AS ?thisPositionOn15) . BIND(?thisPositionOn15 AS ?thisPositionOn16) . BIND(?this AS ?pfs1t44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57888MF_0161130, 1, (STRLEN(?templateMotifCigarQ57888MF_0161130) - STRLEN(REPLACE(?templateMotifCigarQ57888MF_0161130, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ5788831) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) . BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0161133) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57888MF_0161130, 1, (STRLEN(?templateMotifCigarQ57888MF_0161130) - STRLEN(REPLACE(?templateMotifCigarQ57888MF_0161130, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ5788831) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) . BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0161133) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs1t50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag51) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag51, ?UNBOUND_VARIABLE) AS ?case9) . } """ . .