@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:654500 up:source unirule:MF_01871 . _:654501 up:source unirule:MF_01871 . _:654502 up:source unirule:MF_01871 . _:654503 up:source unirule:MF_01871 . _:654504 up:source unirule:MF_01871 . _:654505 up:source unirule:MF_01871 . _:654506 up:source unirule:MF_01871 . _:654507 up:source unirule:MF_01871 . _:654508 up:source unirule:MF_01871 . _:654509 up:source unirule:MF_01871 . _:654510 up:source unirule:MF_01871 . _:654511 up:source unirule:MF_01871 . _:654512 up:source unirule:MF_01871 . _:654513 up:source unirule:MF_01871 . _:654514 up:source unirule:MF_01871 . _:654515 up:source unirule:MF_01871 . _:654516 up:source unirule:MF_01871 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation4 ; up:classifiedWith GO:0005886 , keyword:1003 , keyword:472 , keyword:813 ; up:recommendedName ?name0 . ?name0 up:fullName 'Probable inorganic carbon transporter subunit DabA' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'dabA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Part of an energy-coupled inorganic carbon pump.' . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'Forms a complex with DabB.' . ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the inorganic carbon transporter (TC 9.A.2) DabA family.' . ?case5 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 . ?case6 up:classifiedWith keyword:997 . ?pfs8 up:annotation ?annotation9 , ?annotation15 , ?annotation21 , ?annotation27 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:29105 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:29105 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:29105 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:29105 . _:654517 a rdf:Statement ; up:attribution _:654500 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:654518 a rdf:Statement ; up:attribution _:654501 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:654519 a rdf:Statement ; up:attribution _:654502 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:654520 a rdf:Statement ; up:attribution _:654503 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:654521 a rdf:Statement ; up:attribution _:654504 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:654522 a rdf:Statement ; up:attribution _:654505 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:654523 a rdf:Statement ; up:attribution _:654506 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:654524 a rdf:Statement ; up:attribution _:654507 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:654525 a rdf:Statement ; up:attribution _:654508 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005886 . _:654526 a rdf:Statement ; up:attribution _:654509 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:654527 a rdf:Statement ; up:attribution _:654510 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:654528 a rdf:Statement ; up:attribution _:654511 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:654529 a rdf:Statement ; up:attribution _:654512 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object keyword:997 . _:654530 a rdf:Statement ; up:source unirule:MF_01871 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:654531 a rdf:Statement ; up:attribution _:654513 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:654532 a rdf:Statement ; up:source unirule:MF_01871 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:654533 a rdf:Statement ; up:attribution _:654514 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:654534 a rdf:Statement ; up:source unirule:MF_01871 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:654535 a rdf:Statement ; up:attribution _:654515 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:654536 a rdf:Statement ; up:source unirule:MF_01871 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:654537 a rdf:Statement ; up:attribution _:654516 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01871 #Rule MF_01871 Created by:? on:2009-09-28 Modified by:Edouard de Castro on:2022-11-19 VALUES ?supertaxon33 {taxon:2 taxon:183963} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01871 . ?thisOrganism rdfs:subClassOf+ ?supertaxon33 . BIND(URI(CONCAT(STR(?this), '#MF_01871a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01871a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01871a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01871a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch38 faldo:location ?templateMotifSequenceMatchRegionD0KWS739 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0KWS741 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarD0KWS7MF_0187134 . ?templateMotifSequenceMatchRegionD0KWS739 faldo:begin ?templateMotifSequenceMatchBeginD0KWS740 . ?templateMotifSequenceMatchBeginD0KWS740 faldo:position ?templateMotifSequenceMatchBeginPositionD0KWS735 ; faldo:reference isoform:D0KWS7-1 . ?templateMotifSequenceProfileAlignmentOperationD0KWS741 edam:has_input signature:MF_01871 ; rdf:type edam:operation_0300 . ?targetMotifMatch42 faldo:location ?targetMotifMatchRegionMatch43 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0187145 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarD0KWS7MF_0187136 . ?targetMotifMatchRegionMatch43 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0187144 . ?targetMotifMatchRegionMatchBeginMF_0187144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0187137 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0187145 edam:has_input signature:MF_01871 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0KWS7MF_0187134, 1, (STRLEN(?templateMotifCigarD0KWS7MF_0187134) - STRLEN(REPLACE(?templateMotifCigarD0KWS7MF_0187134, CONCAT('^(?:-*[^-]){', STR(((351 - ?templateMotifSequenceMatchBeginPositionD0KWS735) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0KWS7MF_0187136, 1, (STRLEN(?targetMotifMatchCigarD0KWS7MF_0187136) - STRLEN(REPLACE(?targetMotifMatchCigarD0KWS7MF_0187136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0KWS7MF_0187136, 1, (STRLEN(?targetMotifMatchCigarD0KWS7MF_0187136) - STRLEN(REPLACE(?targetMotifMatchCigarD0KWS7MF_0187136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) . BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0187137) - 1) AS ?thisPositionOn13) . BIND(?thisPositionOn13 AS ?thisPositionOn14) . BIND(?this AS ?pfs1t48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0KWS7MF_0187134, 1, (STRLEN(?templateMotifCigarD0KWS7MF_0187134) - STRLEN(REPLACE(?templateMotifCigarD0KWS7MF_0187134, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionD0KWS735) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0KWS7MF_0187136, 1, (STRLEN(?targetMotifMatchCigarD0KWS7MF_0187136) - STRLEN(REPLACE(?targetMotifMatchCigarD0KWS7MF_0187136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0KWS7MF_0187136, 1, (STRLEN(?targetMotifMatchCigarD0KWS7MF_0187136) - STRLEN(REPLACE(?targetMotifMatchCigarD0KWS7MF_0187136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0187137) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0KWS7MF_0187134, 1, (STRLEN(?templateMotifCigarD0KWS7MF_0187134) - STRLEN(REPLACE(?templateMotifCigarD0KWS7MF_0187134, CONCAT('^(?:-*[^-]){', STR(((524 - ?templateMotifSequenceMatchBeginPositionD0KWS735) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0KWS7MF_0187136, 1, (STRLEN(?targetMotifMatchCigarD0KWS7MF_0187136) - STRLEN(REPLACE(?targetMotifMatchCigarD0KWS7MF_0187136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0KWS7MF_0187136, 1, (STRLEN(?targetMotifMatchCigarD0KWS7MF_0187136) - STRLEN(REPLACE(?targetMotifMatchCigarD0KWS7MF_0187136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) . BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0187137) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0KWS7MF_0187134, 1, (STRLEN(?templateMotifCigarD0KWS7MF_0187134) - STRLEN(REPLACE(?templateMotifCigarD0KWS7MF_0187134, CONCAT('^(?:-*[^-]){', STR(((539 - ?templateMotifSequenceMatchBeginPositionD0KWS735) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0KWS7MF_0187136, 1, (STRLEN(?targetMotifMatchCigarD0KWS7MF_0187136) - STRLEN(REPLACE(?targetMotifMatchCigarD0KWS7MF_0187136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0KWS7MF_0187136, 1, (STRLEN(?targetMotifMatchCigarD0KWS7MF_0187136) - STRLEN(REPLACE(?targetMotifMatchCigarD0KWS7MF_0187136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) . BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0187137) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag58) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag58, ?UNBOUND_VARIABLE) AS ?case5) . OPTIONAL { ?this a up:Protein . { ?this up:proteome . } UNION { ?this up:proteome ?p59 . ?p59 skos:narrower . } BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . { FILTER (! (EXISTS { { ?this up:proteome . } UNION { ?this up:proteome ?p60 . ?p60 skos:narrower . } })) . } UNION { { ?this up:proteome . } UNION { ?this up:proteome ?p61 . ?p61 skos:narrower . } } BIND(?this AS ?case7) . } } """ . .