@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:700053 up:source unirule:MF_01984 . _:700054 up:source unirule:MF_01984 . _:700055 up:source unirule:MF_01984 . _:700056 up:source unirule:MF_01984 . _:700057 up:source unirule:MF_01984 . _:700058 up:source unirule:MF_01984 . _:700059 up:source unirule:MF_01984 . _:700060 up:source unirule:MF_01984 . _:700061 up:source unirule:MF_01984 . _:700062 up:source unirule:MF_01984 . _:700063 up:source unirule:MF_01984 . _:700064 up:source unirule:MF_01984 . _:700065 up:source unirule:MF_01984 . _:700066 up:source unirule:MF_01984 . _:700067 up:source unirule:MF_01984 . _:700068 up:source unirule:MF_01984 . _:700069 up:source unirule:MF_01984 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 ; up:classifiedWith GO:0004659 , keyword:285 , keyword:288 , keyword:637 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.5.1.129' ; up:fullName 'Flavin prenyltransferase UbiX' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'ubiX' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity ; up:enzymeClass . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the UbiX/PAD1 family.' . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; up:ligand ?ligand10 ; rdf:type up:Binding_Site_Annotation . ?pfsb8 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?ligand10 rdfs:subClassOf chebi:58210 . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:58210 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:58210 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:58210 . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; up:ligand ?ligand38 ; rdf:type up:Binding_Site_Annotation . ?pfsb36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?ligand38 rdfs:subClassOf chebi:58210 . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; up:ligand ?ligand45 ; rdf:type up:Binding_Site_Annotation . ?pfsb43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand45 rdfs:subClassOf chebi:88052 . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; up:ligand ?ligand52 ; rdf:type up:Binding_Site_Annotation . ?pfsb50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?ligand52 rdfs:subClassOf chebi:88052 . _:700070 a rdf:Statement ; up:attribution _:700053 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:700071 a rdf:Statement ; up:attribution _:700054 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:700072 a rdf:Statement ; up:attribution _:700055 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:700073 a rdf:Statement ; up:attribution _:700056 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:700074 a rdf:Statement ; up:attribution _:700057 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:700075 a rdf:Statement ; up:attribution _:700058 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:285 . _:700076 a rdf:Statement ; up:attribution _:700059 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:288 . _:700077 a rdf:Statement ; up:attribution _:700060 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:637 . _:700078 a rdf:Statement ; up:attribution _:700061 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:700079 a rdf:Statement ; up:attribution _:700062 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004659 . _:700080 a rdf:Statement ; up:source unirule:MF_01984 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:700081 a rdf:Statement ; up:attribution _:700063 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:700082 a rdf:Statement ; up:source unirule:MF_01984 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:700083 a rdf:Statement ; up:attribution _:700064 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:700084 a rdf:Statement ; up:source unirule:MF_01984 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:700085 a rdf:Statement ; up:attribution _:700065 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:700086 a rdf:Statement ; up:source unirule:MF_01984 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:700087 a rdf:Statement ; up:attribution _:700066 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:700088 a rdf:Statement ; up:source unirule:MF_01984 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:700089 a rdf:Statement ; up:attribution _:700067 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:700090 a rdf:Statement ; up:source unirule:MF_01984 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:700091 a rdf:Statement ; up:attribution _:700068 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:700092 a rdf:Statement ; up:source unirule:MF_01984 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:700093 a rdf:Statement ; up:attribution _:700069 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01984 #Rule MF_01984 Created by:? on:2015-09-01 Modified by:Edouard de Castro on:2024-09-19 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01984 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_01986 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01984 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01984 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_01986 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01984 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2 . })) . } BIND(URI(CONCAT(STR(?this), '#MF_01984a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01984a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01984a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01984a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionQ9HX0860 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX0862 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9HX08MF_0198455 . ?templateMotifSequenceMatchRegionQ9HX0860 faldo:begin ?templateMotifSequenceMatchBeginQ9HX0861 . ?templateMotifSequenceMatchBeginQ9HX0861 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX0856 ; faldo:reference isoform:Q9HX08-1 . ?templateMotifSequenceProfileAlignmentOperationQ9HX0862 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . ?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198466 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9HX08MF_0198457 . ?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198465 . ?targetMotifMatchRegionMatchBeginMF_0198465 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198458 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0198466 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_0198455, 1, (STRLEN(?templateMotifCigarQ9HX08MF_0198455) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_0198455, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionQ9HX0856) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198457, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198457) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198457, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198457) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) . BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0198458) - 1) AS ?thisPositionOn11) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_0198455, 1, (STRLEN(?templateMotifCigarQ9HX08MF_0198455) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_0198455, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionQ9HX0856) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198457, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198457) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198457, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198457) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) . BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0198458) - 1) AS ?thisPositionOn12) . BIND(?this AS ?pfs1t71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) . FILTER (REGEX('G[AGS][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)))) . BIND(URI(CONCAT(STR(?this), '#MF_01984a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionQ9HX0877 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX0879 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9HX08MF_0198472 . ?templateMotifSequenceMatchRegionQ9HX0877 faldo:begin ?templateMotifSequenceMatchBeginQ9HX0878 . ?templateMotifSequenceMatchBeginQ9HX0878 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX0873 ; faldo:reference isoform:Q9HX08-1 . ?templateMotifSequenceProfileAlignmentOperationQ9HX0879 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . ?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198483 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9HX08MF_0198474 . ?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198482 . ?targetMotifMatchRegionMatchBeginMF_0198482 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198475 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0198483 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_0198472, 1, (STRLEN(?templateMotifCigarQ9HX08MF_0198472) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_0198472, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionQ9HX0873) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198474, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198474) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198474, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198474) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) . BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0198475) - 1) AS ?thisPositionOn18) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_0198472, 1, (STRLEN(?templateMotifCigarQ9HX08MF_0198472) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_0198472, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ9HX0873) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198474, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198474) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198474, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198474) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) . BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0198475) - 1) AS ?thisPositionOn19) . BIND(?this AS ?pfs1t88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER (REGEX('[ST][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) . BIND(URI(CONCAT(STR(?this), '#MF_01984a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionQ9HX0894 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX0896 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9HX08MF_0198489 . ?templateMotifSequenceMatchRegionQ9HX0894 faldo:begin ?templateMotifSequenceMatchBeginQ9HX0895 . ?templateMotifSequenceMatchBeginQ9HX0895 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX0890 ; faldo:reference isoform:Q9HX08-1 . ?templateMotifSequenceProfileAlignmentOperationQ9HX0896 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . ?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984100 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9HX08MF_0198491 . ?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198499 . ?targetMotifMatchRegionMatchBeginMF_0198499 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198492 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01984100 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_0198489, 1, (STRLEN(?templateMotifCigarQ9HX08MF_0198489) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_0198489, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionQ9HX0890) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198491, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198491) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198491, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198491) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) . BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0198492) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01984a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ9HX08109 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX08111 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9HX08MF_01984104 . ?templateMotifSequenceMatchRegionQ9HX08109 faldo:begin ?templateMotifSequenceMatchBeginQ9HX08110 . ?templateMotifSequenceMatchBeginQ9HX08110 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX08105 ; faldo:reference isoform:Q9HX08-1 . ?templateMotifSequenceProfileAlignmentOperationQ9HX08111 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . ?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984115 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9HX08MF_01984106 . ?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984114 . ?targetMotifMatchRegionMatchBeginMF_01984114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984107 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01984115 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_01984104, 1, (STRLEN(?templateMotifCigarQ9HX08MF_01984104) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_01984104, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionQ9HX08105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984106, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984106, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01984107) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs1t118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01984a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ9HX08124 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX08126 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9HX08MF_01984119 . ?templateMotifSequenceMatchRegionQ9HX08124 faldo:begin ?templateMotifSequenceMatchBeginQ9HX08125 . ?templateMotifSequenceMatchBeginQ9HX08125 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX08120 ; faldo:reference isoform:Q9HX08-1 . ?templateMotifSequenceProfileAlignmentOperationQ9HX08126 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . ?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984130 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9HX08MF_01984121 . ?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984129 . ?targetMotifMatchRegionMatchBeginMF_01984129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984122 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01984130 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_01984119, 1, (STRLEN(?templateMotifCigarQ9HX08MF_01984119) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_01984119, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionQ9HX08120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984121, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984121, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01984122) - 1) AS ?thisPositionOn39) . BIND(?thisPositionOn39 AS ?thisPositionOn40) . BIND(?this AS ?pfs1t133) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01984a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionQ9HX08139 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX08141 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9HX08MF_01984134 . ?templateMotifSequenceMatchRegionQ9HX08139 faldo:begin ?templateMotifSequenceMatchBeginQ9HX08140 . ?templateMotifSequenceMatchBeginQ9HX08140 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX08135 ; faldo:reference isoform:Q9HX08-1 . ?templateMotifSequenceProfileAlignmentOperationQ9HX08141 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . ?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984145 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9HX08MF_01984136 . ?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984144 . ?targetMotifMatchRegionMatchBeginMF_01984144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984137 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01984145 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_01984134, 1, (STRLEN(?templateMotifCigarQ9HX08MF_01984134) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_01984134, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionQ9HX08135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984136, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984136) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984136, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984136) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) . BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01984137) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs1t148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01984a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionQ9HX08154 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX08156 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9HX08MF_01984149 . ?templateMotifSequenceMatchRegionQ9HX08154 faldo:begin ?templateMotifSequenceMatchBeginQ9HX08155 . ?templateMotifSequenceMatchBeginQ9HX08155 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX08150 ; faldo:reference isoform:Q9HX08-1 . ?templateMotifSequenceProfileAlignmentOperationQ9HX08156 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . ?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984160 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9HX08MF_01984151 . ?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984159 . ?targetMotifMatchRegionMatchBeginMF_01984159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984152 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01984160 edam:has_input signature:MF_01984 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_01984149, 1, (STRLEN(?templateMotifCigarQ9HX08MF_01984149) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_01984149, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionQ9HX08150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984151, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984151, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01984152) - 1) AS ?thisPositionOn53) . BIND(?thisPositionOn53 AS ?thisPositionOn54) . BIND(?this AS ?pfs1t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01984a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } } """ . .