CONSTRUCT { _:715419 up:source unirule:MF_02029 . _:715420 up:source unirule:MF_02029 . _:715421 up:source unirule:MF_02029 . _:715422 up:source unirule:MF_02029 . _:715423 up:source unirule:MF_02029 . _:715424 up:source unirule:MF_02029 . _:715425 up:source unirule:MF_02029 . _:715426 up:source unirule:MF_02029 . _:715427 up:source unirule:MF_02029 . _:715428 up:source unirule:MF_02029 . _:715429 up:source unirule:MF_02029 . _:715430 up:source unirule:MF_02029 . _:715431 up:source unirule:MF_02029 . _:715432 up:source unirule:MF_02029 . _:715433 up:source unirule:MF_02029 . _:715434 up:source unirule:MF_02029 . _:715435 up:source unirule:MF_02029 . _:715436 up:source unirule:MF_02029 . _:715437 up:source unirule:MF_02029 . _:715438 up:source unirule:MF_02029 . _:715439 up:source unirule:MF_02029 . _:715440 up:source unirule:MF_02029 . _:715441 up:source unirule:MF_02029 . _:715442 up:source unirule:MF_02029 . _:715443 up:source unirule:MF_02029 . _:715444 up:source unirule:MF_02029 . _:715445 up:source unirule:MF_02029 . _:715446 up:source unirule:MF_02029 . _:715447 up:source unirule:MF_02029 . _:715448 up:source unirule:MF_02029 . _:715449 up:source unirule:MF_02029 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0009246 , GO:0089714 , keyword:520 , keyword:560 ; up:recommendedName ?name0 . ?name0 up:ecName '1.1.1.336' ; up:fullName 'UDP-N-acetyl-D-mannosamine dehydrogenase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'UDP-ManNAc 6-dehydrogenase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'wecC' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the four-electron oxidation of UDP-N-acetyl-D-mannosamine (UDP-ManNAc), reducing NAD(+) and releasing UDP-N-acetylmannosaminuronic acid (UDP-ManNAcA).' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/25780>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.1.1.336>. ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation7 a up:Pathway_Annotation ; rdfs:comment 'Bacterial outer membrane biogenesis; enterobacterial common antigen biosynthesis.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. WecC subfamily.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor/acceptor' . ?pfsb11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:57540 . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:57540 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:57540 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf chebi:57540 . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:57540 . ?pfs56 up:annotation ?annotation57 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; up:ligand ?ligand60 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?ligand60 rdfs:subClassOf chebi:70731 . ?pfs63 up:annotation ?annotation64 . ?annotation64 faldo:begin ?pfsb65 ; faldo:end ?pfse66 ; up:ligand ?ligand67 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?ligand67 rdfs:subClassOf chebi:70731 . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; up:ligand ?ligand74 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?ligand74 rdfs:subClassOf chebi:70731 . ?pfs77 up:annotation ?annotation78 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; up:ligand ?ligand81 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb79 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?ligand81 rdfs:subClassOf chebi:70731 . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; up:ligand ?ligand88 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb86 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?ligand88 rdfs:subClassOf chebi:70731 . ?pfs91 up:annotation ?annotation92 . ?annotation92 faldo:begin ?pfsb93 ; faldo:end ?pfse94 ; up:ligand ?ligand95 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain B' . ?pfsb93 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?pfse94 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?ligand95 rdfs:subClassOf chebi:70731 . ?pfs98 up:annotation ?annotation99 . ?annotation99 faldo:begin ?pfsb100 ; faldo:end ?pfse101 ; up:ligand ?ligand102 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain B' . ?pfsb100 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?pfse101 faldo:position ?thisPositionOn104 ; rdf:type faldo:ExactPosition . ?ligand102 rdfs:subClassOf chebi:70731 . ?pfs105 up:annotation ?annotation106 . ?annotation106 faldo:begin ?pfsb107 ; faldo:end ?pfse108 ; up:ligand ?ligand109 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb107 faldo:position ?thisPositionOn110 ; rdf:type faldo:ExactPosition . ?pfse108 faldo:position ?thisPositionOn111 ; rdf:type faldo:ExactPosition . ?ligand109 rdfs:subClassOf chebi:70731 . ?pfs112 up:annotation ?annotation113 . ?annotation113 faldo:begin ?pfsb114 ; faldo:end ?pfse115 ; up:ligand ?ligand116 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb114 faldo:position ?thisPositionOn117 ; rdf:type faldo:ExactPosition . ?pfse115 faldo:position ?thisPositionOn118 ; rdf:type faldo:ExactPosition . ?ligand116 rdfs:subClassOf chebi:70731 . ?pfs119 up:annotation ?annotation120 . ?annotation120 faldo:begin ?pfsb121 ; faldo:end ?pfse122 ; up:ligand ?ligand123 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb121 faldo:position ?thisPositionOn124 ; rdf:type faldo:ExactPosition . ?pfse122 faldo:position ?thisPositionOn125 ; rdf:type faldo:ExactPosition . ?ligand123 rdfs:subClassOf chebi:70731 . ?pfs126 up:annotation ?annotation127 . ?annotation127 faldo:begin ?pfsb128 ; faldo:end ?pfse129 ; up:ligand ?ligand130 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain B' . ?pfsb128 faldo:position ?thisPositionOn131 ; rdf:type faldo:ExactPosition . ?pfse129 faldo:position ?thisPositionOn132 ; rdf:type faldo:ExactPosition . ?ligand130 rdfs:subClassOf chebi:57540 . ?pfs133 up:annotation ?annotation134 . ?annotation134 faldo:begin ?pfsb135 ; faldo:end ?pfse136 ; up:ligand ?ligand137 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in chain A' . ?pfsb135 faldo:position ?thisPositionOn138 ; rdf:type faldo:ExactPosition . ?pfse136 faldo:position ?thisPositionOn139 ; rdf:type faldo:ExactPosition . ?ligand137 rdfs:subClassOf chebi:70731 . _:715450 a rdf:Statement ; up:attribution _:715419 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:715451 a rdf:Statement ; up:attribution _:715420 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:715452 a rdf:Statement ; up:attribution _:715421 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:715453 a rdf:Statement ; up:attribution _:715422 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:715454 a rdf:Statement ; up:attribution _:715423 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:715455 a rdf:Statement ; up:attribution _:715424 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:715456 a rdf:Statement ; up:attribution _:715425 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:715457 a rdf:Statement ; up:attribution _:715426 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:715458 a rdf:Statement ; up:attribution _:715427 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:715459 a rdf:Statement ; up:attribution _:715428 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:715460 a rdf:Statement ; up:attribution _:715429 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0089714 . _:715461 a rdf:Statement ; up:attribution _:715430 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009246 . _:715462 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:715463 a rdf:Statement ; up:attribution _:715431 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:715464 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:715465 a rdf:Statement ; up:attribution _:715432 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:715466 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:715467 a rdf:Statement ; up:attribution _:715433 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:715468 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:715469 a rdf:Statement ; up:attribution _:715434 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:715470 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:715471 a rdf:Statement ; up:attribution _:715435 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:715472 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:715473 a rdf:Statement ; up:attribution _:715436 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:715474 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:715475 a rdf:Statement ; up:attribution _:715437 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:715476 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:715477 a rdf:Statement ; up:attribution _:715438 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:715478 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:715479 a rdf:Statement ; up:attribution _:715439 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:715480 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:715481 a rdf:Statement ; up:attribution _:715440 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:715482 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:715483 a rdf:Statement ; up:attribution _:715441 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:715484 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:715485 a rdf:Statement ; up:attribution _:715442 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:715486 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs91 ; rdf:predicate up:annotation ; rdf:object ?annotation92 . _:715487 a rdf:Statement ; up:attribution _:715443 ; rdf:subject ?pfs91 ; rdf:predicate up:annotation ; rdf:object ?annotation92 . _:715488 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs98 ; rdf:predicate up:annotation ; rdf:object ?annotation99 . _:715489 a rdf:Statement ; up:attribution _:715444 ; rdf:subject ?pfs98 ; rdf:predicate up:annotation ; rdf:object ?annotation99 . _:715490 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs105 ; rdf:predicate up:annotation ; rdf:object ?annotation106 . _:715491 a rdf:Statement ; up:attribution _:715445 ; rdf:subject ?pfs105 ; rdf:predicate up:annotation ; rdf:object ?annotation106 . _:715492 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs112 ; rdf:predicate up:annotation ; rdf:object ?annotation113 . _:715493 a rdf:Statement ; up:attribution _:715446 ; rdf:subject ?pfs112 ; rdf:predicate up:annotation ; rdf:object ?annotation113 . _:715494 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs119 ; rdf:predicate up:annotation ; rdf:object ?annotation120 . _:715495 a rdf:Statement ; up:attribution _:715447 ; rdf:subject ?pfs119 ; rdf:predicate up:annotation ; rdf:object ?annotation120 . _:715496 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs126 ; rdf:predicate up:annotation ; rdf:object ?annotation127 . _:715497 a rdf:Statement ; up:attribution _:715448 ; rdf:subject ?pfs126 ; rdf:predicate up:annotation ; rdf:object ?annotation127 . _:715498 a rdf:Statement ; up:source unirule:MF_02029 ; rdf:subject ?pfs133 ; rdf:predicate up:annotation ; rdf:object ?annotation134 . _:715499 a rdf:Statement ; up:attribution _:715449 ; rdf:subject ?pfs133 ; rdf:predicate up:annotation ; rdf:object ?annotation134 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02029 #Rule MF_02029 Created by:? on:2015-05-11 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02029 . ?thisOrganism rdfs:subClassOf+ taxon:91347 . BIND(URI(CONCAT(STR(?this), '#MF_02029a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02029a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02029a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02029a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02029a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_02029a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_02029a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP27829145 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829147 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029140 . ?templateMotifSequenceMatchRegionP27829145 faldo:begin ?templateMotifSequenceMatchBeginP27829146 . ?templateMotifSequenceMatchBeginP27829146 faldo:position ?templateMotifSequenceMatchBeginPositionP27829141 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829147 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029151 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029142 . ?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029150 . ?targetMotifMatchRegionMatchBeginMF_02029150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029143 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029151 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029140, 1, (STRLEN(?templateMotifCigarP27829MF_02029140) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029140, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP27829141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029142, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029142) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029142, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029142) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) . BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_02029143) - 1) AS ?thisPositionOn13) . BIND(?thisPositionOn13 AS ?thisPositionOn14) . BIND(?this AS ?pfs1t154) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP27829160 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829162 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029155 . ?templateMotifSequenceMatchRegionP27829160 faldo:begin ?templateMotifSequenceMatchBeginP27829161 . ?templateMotifSequenceMatchBeginP27829161 faldo:position ?templateMotifSequenceMatchBeginPositionP27829156 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829162 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029166 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029157 . ?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029165 . ?targetMotifMatchRegionMatchBeginMF_02029165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029158 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029166 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029155, 1, (STRLEN(?templateMotifCigarP27829MF_02029155) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029155, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionP27829156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029157, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029157) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029157, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029157) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) . BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_02029158) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t169) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP27829175 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829177 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029170 . ?templateMotifSequenceMatchRegionP27829175 faldo:begin ?templateMotifSequenceMatchBeginP27829176 . ?templateMotifSequenceMatchBeginP27829176 faldo:position ?templateMotifSequenceMatchBeginPositionP27829171 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829177 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029181 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029172 . ?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029180 . ?targetMotifMatchRegionMatchBeginMF_02029180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029173 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029181 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029170, 1, (STRLEN(?templateMotifCigarP27829MF_02029170) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029170, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP27829171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029172, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029172) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029172, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029172) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) . BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_02029173) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t184) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch189 faldo:location ?templateMotifSequenceMatchRegionP27829190 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829192 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029185 . ?templateMotifSequenceMatchRegionP27829190 faldo:begin ?templateMotifSequenceMatchBeginP27829191 . ?templateMotifSequenceMatchBeginP27829191 faldo:position ?templateMotifSequenceMatchBeginPositionP27829186 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829192 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch193 faldo:location ?targetMotifMatchRegionMatch194 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029196 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029187 . ?targetMotifMatchRegionMatch194 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029195 . ?targetMotifMatchRegionMatchBeginMF_02029195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029188 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029196 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029185, 1, (STRLEN(?templateMotifCigarP27829MF_02029185) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029185, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP27829186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029187, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029187) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029187, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029187) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) . BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_02029188) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t199) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'I')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionP27829205 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829207 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029200 . ?templateMotifSequenceMatchRegionP27829205 faldo:begin ?templateMotifSequenceMatchBeginP27829206 . ?templateMotifSequenceMatchBeginP27829206 faldo:position ?templateMotifSequenceMatchBeginPositionP27829201 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829207 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029211 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029202 . ?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029210 . ?targetMotifMatchRegionMatchBeginMF_02029210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029203 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029211 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029200, 1, (STRLEN(?templateMotifCigarP27829MF_02029200) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029200, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP27829201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029202, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029202) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029202, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029202) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) . BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_02029203) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t214) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionP27829220 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829222 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029215 . ?templateMotifSequenceMatchRegionP27829220 faldo:begin ?templateMotifSequenceMatchBeginP27829221 . ?templateMotifSequenceMatchBeginP27829221 faldo:position ?templateMotifSequenceMatchBeginPositionP27829216 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829222 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029226 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029217 . ?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029225 . ?targetMotifMatchRegionMatchBeginMF_02029225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029218 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029226 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029215, 1, (STRLEN(?templateMotifCigarP27829MF_02029215) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029215, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP27829216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029217, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029217) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029217, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029217) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) . BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_02029218) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs1t229) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch234 faldo:location ?templateMotifSequenceMatchRegionP27829235 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829237 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029230 . ?templateMotifSequenceMatchRegionP27829235 faldo:begin ?templateMotifSequenceMatchBeginP27829236 . ?templateMotifSequenceMatchBeginP27829236 faldo:position ?templateMotifSequenceMatchBeginPositionP27829231 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829237 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch238 faldo:location ?targetMotifMatchRegionMatch239 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029241 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029232 . ?targetMotifMatchRegionMatch239 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029240 . ?targetMotifMatchRegionMatchBeginMF_02029240 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029233 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029241 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029230, 1, (STRLEN(?templateMotifCigarP27829MF_02029230) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029230, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP27829231) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1242) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029232, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029232) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029232, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029232) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), '')))), '[^-]', ''))) AS ?step2243) . BIND(((?step2243 + ?targetMotifMatchRegionMatchBeginPositionMF_02029233) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs1t244) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch249 faldo:location ?templateMotifSequenceMatchRegionP27829250 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829252 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029245 . ?templateMotifSequenceMatchRegionP27829250 faldo:begin ?templateMotifSequenceMatchBeginP27829251 . ?templateMotifSequenceMatchBeginP27829251 faldo:position ?templateMotifSequenceMatchBeginPositionP27829246 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829252 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch253 faldo:location ?targetMotifMatchRegionMatch254 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029256 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029247 . ?targetMotifMatchRegionMatch254 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029255 . ?targetMotifMatchRegionMatchBeginMF_02029255 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029248 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029256 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029245, 1, (STRLEN(?templateMotifCigarP27829MF_02029245) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029245, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP27829246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1257) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029247, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029247) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029247, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029247) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), '')))), '[^-]', ''))) AS ?step2258) . BIND(((?step2258 + ?targetMotifMatchRegionMatchBeginPositionMF_02029248) - 1) AS ?thisPositionOn61) . BIND(?thisPositionOn61 AS ?thisPositionOn62) . BIND(?this AS ?pfs1t259) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a57')) AS ?annotation57) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch264 faldo:location ?templateMotifSequenceMatchRegionP27829265 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829267 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029260 . ?templateMotifSequenceMatchRegionP27829265 faldo:begin ?templateMotifSequenceMatchBeginP27829266 . ?templateMotifSequenceMatchBeginP27829266 faldo:position ?templateMotifSequenceMatchBeginPositionP27829261 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829267 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch268 faldo:location ?targetMotifMatchRegionMatch269 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029271 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029262 . ?targetMotifMatchRegionMatch269 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029270 . ?targetMotifMatchRegionMatchBeginMF_02029270 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029263 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029271 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029260, 1, (STRLEN(?templateMotifCigarP27829MF_02029260) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029260, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP27829261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1272) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029262, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029262) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029262, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029262) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), '')))), '[^-]', ''))) AS ?step2273) . BIND(((?step2273 + ?targetMotifMatchRegionMatchBeginPositionMF_02029263) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs1t274) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'V')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a64')) AS ?annotation64) . BIND(?this AS ?pfs63) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch279 faldo:location ?templateMotifSequenceMatchRegionP27829280 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829282 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029275 . ?templateMotifSequenceMatchRegionP27829280 faldo:begin ?templateMotifSequenceMatchBeginP27829281 . ?templateMotifSequenceMatchBeginP27829281 faldo:position ?templateMotifSequenceMatchBeginPositionP27829276 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829282 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch283 faldo:location ?targetMotifMatchRegionMatch284 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029286 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029277 . ?targetMotifMatchRegionMatch284 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029285 . ?targetMotifMatchRegionMatchBeginMF_02029285 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029278 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029286 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029275, 1, (STRLEN(?templateMotifCigarP27829MF_02029275) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029275, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP27829276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029277, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029277) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029277, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029277) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) . BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_02029278) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs1t289) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch294 faldo:location ?templateMotifSequenceMatchRegionP27829295 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829297 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029290 . ?templateMotifSequenceMatchRegionP27829295 faldo:begin ?templateMotifSequenceMatchBeginP27829296 . ?templateMotifSequenceMatchBeginP27829296 faldo:position ?templateMotifSequenceMatchBeginPositionP27829291 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829297 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch298 faldo:location ?targetMotifMatchRegionMatch299 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029301 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029292 . ?targetMotifMatchRegionMatch299 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029300 . ?targetMotifMatchRegionMatchBeginMF_02029300 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029293 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029301 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029290, 1, (STRLEN(?templateMotifCigarP27829MF_02029290) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029290, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionP27829291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029292, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029292) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029292, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029292) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) . BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_02029293) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs1t304) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a78')) AS ?annotation78) . BIND(?this AS ?pfs77) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch309 faldo:location ?templateMotifSequenceMatchRegionP27829310 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829312 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029305 . ?templateMotifSequenceMatchRegionP27829310 faldo:begin ?templateMotifSequenceMatchBeginP27829311 . ?templateMotifSequenceMatchBeginP27829311 faldo:position ?templateMotifSequenceMatchBeginPositionP27829306 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829312 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch313 faldo:location ?targetMotifMatchRegionMatch314 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029316 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029307 . ?targetMotifMatchRegionMatch314 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029315 . ?targetMotifMatchRegionMatchBeginMF_02029315 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029308 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029316 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029305, 1, (STRLEN(?templateMotifCigarP27829MF_02029305) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029305, CONCAT('^(?:-*[^-]){', STR(((219 - ?templateMotifSequenceMatchBeginPositionP27829306) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1317) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029307, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029307) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029307, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029307) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), '')))), '[^-]', ''))) AS ?step2318) . BIND(((?step2318 + ?targetMotifMatchRegionMatchBeginPositionMF_02029308) - 1) AS ?thisPositionOn89) . BIND(?thisPositionOn89 AS ?thisPositionOn90) . BIND(?this AS ?pfs1t319) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch324 faldo:location ?templateMotifSequenceMatchRegionP27829325 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829327 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029320 . ?templateMotifSequenceMatchRegionP27829325 faldo:begin ?templateMotifSequenceMatchBeginP27829326 . ?templateMotifSequenceMatchBeginP27829326 faldo:position ?templateMotifSequenceMatchBeginPositionP27829321 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829327 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch328 faldo:location ?targetMotifMatchRegionMatch329 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029331 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029322 . ?targetMotifMatchRegionMatch329 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029330 . ?targetMotifMatchRegionMatchBeginMF_02029330 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029323 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029331 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029320, 1, (STRLEN(?templateMotifCigarP27829MF_02029320) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029320, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP27829321) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1332) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029322, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029322) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029322, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029322) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), '')))), '[^-]', ''))) AS ?step2333) . BIND(((?step2333 + ?targetMotifMatchRegionMatchBeginPositionMF_02029323) - 1) AS ?thisPositionOn96) . BIND(?thisPositionOn96 AS ?thisPositionOn97) . BIND(?this AS ?pfs1t334) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a92')) AS ?annotation92) . BIND(?this AS ?pfs91) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch339 faldo:location ?templateMotifSequenceMatchRegionP27829340 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829342 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029335 . ?templateMotifSequenceMatchRegionP27829340 faldo:begin ?templateMotifSequenceMatchBeginP27829341 . ?templateMotifSequenceMatchBeginP27829341 faldo:position ?templateMotifSequenceMatchBeginPositionP27829336 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829342 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch343 faldo:location ?targetMotifMatchRegionMatch344 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029346 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029337 . ?targetMotifMatchRegionMatch344 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029345 . ?targetMotifMatchRegionMatchBeginMF_02029345 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029338 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029346 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029335, 1, (STRLEN(?templateMotifCigarP27829MF_02029335) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029335, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP27829336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1347) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029337, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029337) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029337, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029337) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), '')))), '[^-]', ''))) AS ?step2348) . BIND(((?step2348 + ?targetMotifMatchRegionMatchBeginPositionMF_02029338) - 1) AS ?thisPositionOn103) . BIND(?thisPositionOn103 AS ?thisPositionOn104) . BIND(?this AS ?pfs1t349) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a99')) AS ?annotation99) . BIND(?this AS ?pfs98) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch354 faldo:location ?templateMotifSequenceMatchRegionP27829355 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829357 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029350 . ?templateMotifSequenceMatchRegionP27829355 faldo:begin ?templateMotifSequenceMatchBeginP27829356 . ?templateMotifSequenceMatchBeginP27829356 faldo:position ?templateMotifSequenceMatchBeginPositionP27829351 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829357 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch358 faldo:location ?targetMotifMatchRegionMatch359 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029361 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029352 . ?targetMotifMatchRegionMatch359 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029360 . ?targetMotifMatchRegionMatchBeginMF_02029360 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029353 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029361 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029350, 1, (STRLEN(?templateMotifCigarP27829MF_02029350) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029350, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionP27829351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1362) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029352, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029352) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029352, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029352) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), '')))), '[^-]', ''))) AS ?step2363) . BIND(((?step2363 + ?targetMotifMatchRegionMatchBeginPositionMF_02029353) - 1) AS ?thisPositionOn110) . BIND(?thisPositionOn110 AS ?thisPositionOn111) . BIND(?this AS ?pfs1t364) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse108) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a106')) AS ?annotation106) . BIND(?this AS ?pfs105) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch369 faldo:location ?templateMotifSequenceMatchRegionP27829370 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829372 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029365 . ?templateMotifSequenceMatchRegionP27829370 faldo:begin ?templateMotifSequenceMatchBeginP27829371 . ?templateMotifSequenceMatchBeginP27829371 faldo:position ?templateMotifSequenceMatchBeginPositionP27829366 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829372 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch373 faldo:location ?targetMotifMatchRegionMatch374 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029376 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029367 . ?targetMotifMatchRegionMatch374 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029375 . ?targetMotifMatchRegionMatchBeginMF_02029375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029368 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029376 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029365, 1, (STRLEN(?templateMotifCigarP27829MF_02029365) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029365, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionP27829366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1377) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029367, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029367) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029367, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029367) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), '')))), '[^-]', ''))) AS ?step2378) . BIND(((?step2378 + ?targetMotifMatchRegionMatchBeginPositionMF_02029368) - 1) AS ?thisPositionOn117) . BIND(?thisPositionOn117 AS ?thisPositionOn118) . BIND(?this AS ?pfs1t379) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb114) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse115) . FILTER (REGEX('[FY]', SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02029a113')) AS ?annotation113) . BIND(?this AS ?pfs112) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch384 faldo:location ?templateMotifSequenceMatchRegionP27829385 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829387 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029380 . ?templateMotifSequenceMatchRegionP27829385 faldo:begin ?templateMotifSequenceMatchBeginP27829386 . ?templateMotifSequenceMatchBeginP27829386 faldo:position ?templateMotifSequenceMatchBeginPositionP27829381 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829387 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch388 faldo:location ?targetMotifMatchRegionMatch389 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029391 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029382 . ?targetMotifMatchRegionMatch389 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029390 . ?targetMotifMatchRegionMatchBeginMF_02029390 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029383 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029391 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029380, 1, (STRLEN(?templateMotifCigarP27829MF_02029380) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029380, CONCAT('^(?:-*[^-]){', STR(((331 - ?templateMotifSequenceMatchBeginPositionP27829381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1392) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029382, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029382) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029382, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029382) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), '')))), '[^-]', ''))) AS ?step2393) . BIND(((?step2393 + ?targetMotifMatchRegionMatchBeginPositionMF_02029383) - 1) AS ?thisPositionOn124) . BIND(?thisPositionOn124 AS ?thisPositionOn125) . BIND(?this AS ?pfs1t394) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse122) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn124, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a120')) AS ?annotation120) . BIND(?this AS ?pfs119) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch399 faldo:location ?templateMotifSequenceMatchRegionP27829400 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829402 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029395 . ?templateMotifSequenceMatchRegionP27829400 faldo:begin ?templateMotifSequenceMatchBeginP27829401 . ?templateMotifSequenceMatchBeginP27829401 faldo:position ?templateMotifSequenceMatchBeginPositionP27829396 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829402 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch403 faldo:location ?targetMotifMatchRegionMatch404 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029406 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029397 . ?targetMotifMatchRegionMatch404 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029405 . ?targetMotifMatchRegionMatchBeginMF_02029405 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029398 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029406 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029395, 1, (STRLEN(?templateMotifCigarP27829MF_02029395) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029395, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionP27829396) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1407) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029397, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029397) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029397, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029397) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), '')))), '[^-]', ''))) AS ?step2408) . BIND(((?step2408 + ?targetMotifMatchRegionMatchBeginPositionMF_02029398) - 1) AS ?thisPositionOn131) . BIND(?thisPositionOn131 AS ?thisPositionOn132) . BIND(?this AS ?pfs1t409) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb128) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse129) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02029a127')) AS ?annotation127) . BIND(?this AS ?pfs126) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch414 faldo:location ?templateMotifSequenceMatchRegionP27829415 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829417 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27829MF_02029410 . ?templateMotifSequenceMatchRegionP27829415 faldo:begin ?templateMotifSequenceMatchBeginP27829416 . ?templateMotifSequenceMatchBeginP27829416 faldo:position ?templateMotifSequenceMatchBeginPositionP27829411 ; faldo:reference isoform:P27829-1 . ?templateMotifSequenceProfileAlignmentOperationP27829417 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . ?targetMotifMatch418 faldo:location ?targetMotifMatchRegionMatch419 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029421 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27829MF_02029412 . ?targetMotifMatchRegionMatch419 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029420 . ?targetMotifMatchRegionMatchBeginMF_02029420 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029413 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02029421 edam:has_input signature:MF_02029 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029410, 1, (STRLEN(?templateMotifCigarP27829MF_02029410) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029410, CONCAT('^(?:-*[^-]){', STR(((416 - ?templateMotifSequenceMatchBeginPositionP27829411) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1422) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029412, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029412) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029412, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1422), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029412, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029412) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029412, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1422), '}'), '')))), '[^-]', ''))) AS ?step2423) . BIND(((?step2423 + ?targetMotifMatchRegionMatchBeginPositionMF_02029413) - 1) AS ?thisPositionOn138) . BIND(?thisPositionOn138 AS ?thisPositionOn139) . BIND(?this AS ?pfs1t424) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfsb135) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfse136) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn138, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02029a134')) AS ?annotation134) . BIND(?this AS ?pfs133) . } }