@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:727025 up:source unirule:MF_02057 . _:727026 up:source unirule:MF_02057 . _:727027 up:source unirule:MF_02057 . _:727028 up:source unirule:MF_02057 . _:727029 up:source unirule:MF_02057 . _:727030 up:source unirule:MF_02057 . _:727031 up:source unirule:MF_02057 . _:727032 up:source unirule:MF_02057 . _:727033 up:source unirule:MF_02057 . _:727034 up:source unirule:MF_02057 . _:727035 up:source unirule:MF_02057 . _:727036 up:source unirule:MF_02057 . _:727037 up:source unirule:MF_02057 . _:727038 up:source unirule:MF_02057 . _:727039 up:source unirule:MF_02057 . _:727040 up:source unirule:MF_02057 . _:727041 up:source unirule:MF_02057 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 ; up:classifiedWith GO:0006400 , GO:0097697 , keyword:489 , keyword:808 , keyword:819 , keyword:949 ; up:recommendedName ?name0 . ?name0 up:ecName '2.1.1.-' ; up:fullName 'tRNA 5-carboxymethoxyuridine methyltransferase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'cmo5U methyltransferase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'cmoM' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.' . ?pfs7 up:annotation ?annotation8 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; up:ligand ?ligand11 ; rdf:type up:Binding_Site_Annotation . ?pfsb9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?ligand11 rdfs:subClassOf chebi:59789 . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:59789 . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:59789 . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:59789 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:59789 . _:727042 a rdf:Statement ; up:attribution _:727025 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:727043 a rdf:Statement ; up:attribution _:727026 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:727044 a rdf:Statement ; up:attribution _:727027 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:727045 a rdf:Statement ; up:attribution _:727028 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:727046 a rdf:Statement ; up:attribution _:727029 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:727047 a rdf:Statement ; up:attribution _:727030 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:727048 a rdf:Statement ; up:attribution _:727031 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:489 . _:727049 a rdf:Statement ; up:attribution _:727032 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:727050 a rdf:Statement ; up:attribution _:727033 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:727051 a rdf:Statement ; up:attribution _:727034 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:727052 a rdf:Statement ; up:attribution _:727035 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0097697 . _:727053 a rdf:Statement ; up:attribution _:727036 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006400 . _:727054 a rdf:Statement ; up:source unirule:MF_02057 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:727055 a rdf:Statement ; up:attribution _:727037 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:727056 a rdf:Statement ; up:source unirule:MF_02057 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:727057 a rdf:Statement ; up:attribution _:727038 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:727058 a rdf:Statement ; up:source unirule:MF_02057 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:727059 a rdf:Statement ; up:attribution _:727039 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:727060 a rdf:Statement ; up:source unirule:MF_02057 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:727061 a rdf:Statement ; up:attribution _:727040 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:727062 a rdf:Statement ; up:source unirule:MF_02057 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:727063 a rdf:Statement ; up:attribution _:727041 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02057 #Rule MF_02057 Created by:? on:2016-03-08 Modified by:Catherine Rivoire on:2023-10-13 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02057 . ?thisOrganism rdfs:subClassOf+ taxon:1236 . BIND(URI(CONCAT(STR(?this), '#MF_02057a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02057a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02057a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02057a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02057a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionQ8XDG347 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8XDG349 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8XDG3MF_0205742 . ?templateMotifSequenceMatchRegionQ8XDG347 faldo:begin ?templateMotifSequenceMatchBeginQ8XDG348 . ?templateMotifSequenceMatchBeginQ8XDG348 faldo:position ?templateMotifSequenceMatchBeginPositionQ8XDG343 ; faldo:reference isoform:Q8XDG3-1 . ?templateMotifSequenceProfileAlignmentOperationQ8XDG349 edam:has_input signature:MF_02057 ; rdf:type edam:operation_0300 . ?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205753 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8XDG3MF_0205744 . ?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205752 . ?targetMotifMatchRegionMatchBeginMF_0205752 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205745 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0205753 edam:has_input signature:MF_02057 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205742, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205742) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205742, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionQ8XDG343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205744, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205744) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205744, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205744, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205744) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205744, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) . BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0205745) - 1) AS ?thisPositionOn12) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205742, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205742) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205742, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ8XDG343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205744, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205744) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205744, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205744, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205744) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205744, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) . BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0205745) - 1) AS ?thisPositionOn13) . BIND(?this AS ?pfs1t58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) . FILTER (REGEX('G[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) . BIND(URI(CONCAT(STR(?this), '#MF_02057a8')) AS ?annotation8) . BIND(?this AS ?pfs7) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionQ8XDG364 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8XDG366 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8XDG3MF_0205759 . ?templateMotifSequenceMatchRegionQ8XDG364 faldo:begin ?templateMotifSequenceMatchBeginQ8XDG365 . ?templateMotifSequenceMatchBeginQ8XDG365 faldo:position ?templateMotifSequenceMatchBeginPositionQ8XDG360 ; faldo:reference isoform:Q8XDG3-1 . ?templateMotifSequenceProfileAlignmentOperationQ8XDG366 edam:has_input signature:MF_02057 ; rdf:type edam:operation_0300 . ?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205770 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8XDG3MF_0205761 . ?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205769 . ?targetMotifMatchRegionMatchBeginMF_0205769 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205762 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0205770 edam:has_input signature:MF_02057 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205759, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205759) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205759, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionQ8XDG360) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205761, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205761) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205761, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205761, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205761) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205761, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) . BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0205762) - 1) AS ?thisPositionOn19) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205759, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205759) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205759, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ8XDG360) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205761, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205761) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205761, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205761, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205761) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205761, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) . BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0205762) - 1) AS ?thisPositionOn20) . BIND(?this AS ?pfs1t75) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)) = 'AQ')) . BIND(URI(CONCAT(STR(?this), '#MF_02057a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionQ8XDG381 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8XDG383 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8XDG3MF_0205776 . ?templateMotifSequenceMatchRegionQ8XDG381 faldo:begin ?templateMotifSequenceMatchBeginQ8XDG382 . ?templateMotifSequenceMatchBeginQ8XDG382 faldo:position ?templateMotifSequenceMatchBeginPositionQ8XDG377 ; faldo:reference isoform:Q8XDG3-1 . ?templateMotifSequenceProfileAlignmentOperationQ8XDG383 edam:has_input signature:MF_02057 ; rdf:type edam:operation_0300 . ?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205787 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8XDG3MF_0205778 . ?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205786 . ?targetMotifMatchRegionMatchBeginMF_0205786 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205779 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0205787 edam:has_input signature:MF_02057 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205776, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205776) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205776, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ8XDG377) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205778, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205778) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205778, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205778) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) . BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0205779) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t90) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02057a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionQ8XDG396 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8XDG398 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8XDG3MF_0205791 . ?templateMotifSequenceMatchRegionQ8XDG396 faldo:begin ?templateMotifSequenceMatchBeginQ8XDG397 . ?templateMotifSequenceMatchBeginQ8XDG397 faldo:position ?templateMotifSequenceMatchBeginPositionQ8XDG392 ; faldo:reference isoform:Q8XDG3-1 . ?templateMotifSequenceProfileAlignmentOperationQ8XDG398 edam:has_input signature:MF_02057 ; rdf:type edam:operation_0300 . ?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02057102 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8XDG3MF_0205793 . ?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02057101 . ?targetMotifMatchRegionMatchBeginMF_02057101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205794 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02057102 edam:has_input signature:MF_02057 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205791, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205791) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205791, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionQ8XDG392) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205793, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205793) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205793, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205793, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205793) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205793, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) . BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0205794) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t105) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02057a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionQ8XDG3111 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8XDG3113 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8XDG3MF_02057106 . ?templateMotifSequenceMatchRegionQ8XDG3111 faldo:begin ?templateMotifSequenceMatchBeginQ8XDG3112 . ?templateMotifSequenceMatchBeginQ8XDG3112 faldo:position ?templateMotifSequenceMatchBeginPositionQ8XDG3107 ; faldo:reference isoform:Q8XDG3-1 . ?templateMotifSequenceProfileAlignmentOperationQ8XDG3113 edam:has_input signature:MF_02057 ; rdf:type edam:operation_0300 . ?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02057117 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8XDG3MF_02057108 . ?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02057116 . ?targetMotifMatchRegionMatchBeginMF_02057116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02057109 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02057117 edam:has_input signature:MF_02057 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_02057106, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_02057106) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_02057106, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionQ8XDG3107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_02057108, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_02057108) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_02057108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_02057108, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_02057108) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_02057108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) . BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_02057109) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t120) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_02057a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } } """ . .