CONSTRUCT { _:725722 up:source unirule:MF_02075 . _:725723 up:source unirule:MF_02075 . _:725724 up:source unirule:MF_02075 . _:725725 up:source unirule:MF_02075 . _:725726 up:source unirule:MF_02075 . _:725727 up:source unirule:MF_02075 . _:725728 up:source unirule:MF_02075 . _:725729 up:source unirule:MF_02075 . _:725730 up:source unirule:MF_02075 . _:725731 up:source unirule:MF_02075 . _:725732 up:source unirule:MF_02075 . _:725733 up:source unirule:MF_02075 . _:725734 up:source unirule:MF_02075 . _:725735 up:source unirule:MF_02075 . _:725736 up:source unirule:MF_02075 . _:725737 up:source unirule:MF_02075 . _:725738 up:source unirule:MF_02075 . _:725739 up:source unirule:MF_02075 . _:725740 up:source unirule:MF_02075 . _:725741 up:source unirule:MF_02075 . _:725742 up:source unirule:MF_02075 . _:725743 up:source unirule:MF_02075 . _:725744 up:source unirule:MF_02075 . _:725745 up:source unirule:MF_02075 . _:725746 up:source unirule:MF_02075 . _:725747 up:source unirule:MF_02075 . _:725748 up:source unirule:MF_02075 . _:725749 up:source unirule:MF_02075 . _:725750 up:source unirule:MF_02075 . _:725751 up:source unirule:MF_02075 . _:725752 up:source unirule:MF_02075 . _:725753 up:source unirule:MF_02075 . _:725754 up:source unirule:MF_02075 . _:725755 up:source unirule:MF_02075 . _:725756 up:source unirule:MF_02075 . _:725757 up:source unirule:MF_02075 . _:725758 up:source unirule:MF_02075 . _:725759 up:source unirule:MF_02075 . _:725760 up:source unirule:MF_02075 . ?this up:annotation ?annotation1 , ?annotation2 , ?annotation4 ; up:classifiedWith GO:0004815 , GO:0005524 , GO:0005737 , GO:0006422 , keyword:30 , keyword:436 , keyword:547 , keyword:648 , keyword:67 , keyword:963 . ?gene0 skos:prefLabel 'aspS' . ?annotation1 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation2 a up:Subcellular_Location_Annotation . ?annotation2li3 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.' . ?case5 up:alternativeName ?name7 , ?name8 ; up:recommendedName ?name6 . ?name6 up:ecName '6.1.1.12' ; up:fullName 'Aspartate--tRNA(Asp) ligase' ; rdf:type up:Structured_Name . ?name7 up:fullName 'Aspartyl-tRNA synthetase' ; up:shortName 'AspRS' ; rdf:type up:Structured_Name . ?name8 up:fullName 'Discriminating aspartyl-tRNA synthetase' ; up:shortName 'D-AspRS' ; rdf:type up:Structured_Name . ?case11 up:classifiedWith GO:0000287 , keyword:460 , keyword:479 . ?case12 up:alternativeName ?name14 , ?name15 ; up:recommendedName ?name13 . ?name13 up:ecName '6.1.1.23' ; up:fullName 'Aspartate--tRNA(Asp/Asn) ligase' ; rdf:type up:Structured_Name . ?name14 up:fullName 'Aspartyl-tRNA synthetase' ; up:shortName 'AspRS' ; rdf:type up:Structured_Name . ?name15 up:fullName 'Non-discriminating aspartyl-tRNA synthetase' ; up:shortName 'ND-AspRS' ; rdf:type up:Structured_Name . ?case16 up:alternativeName ?name18 ; up:recommendedName ?name17 . ?name17 up:ecName '6.1.1.12' ; up:fullName 'Aspartate--tRNA ligase' ; rdf:type up:Structured_Name . ?name18 up:fullName 'Aspartyl-tRNA synthetase' ; up:shortName 'AspRS' ; rdf:type up:Structured_Name . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for tRNA non-discrimination' . ?pfsb21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for tRNA discrimination' . ?pfsb27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf chebi:30616 . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf chebi:30616 . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; up:ligand ?ligand49 ; rdf:type up:Binding_Site_Annotation . ?pfsb47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand49 rdfs:subClassOf chebi:30616 . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; rdf:type up:Region_Annotation ; rdfs:comment 'Aspartate' . ?pfsb54 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:29991 . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:29991 . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; up:ligand ?ligand76 ; rdf:type up:Binding_Site_Annotation . ?pfsb74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand76 rdfs:subClassOf chebi:30616 . ?pfs79 up:annotation ?annotation80 . ?annotation80 faldo:begin ?pfsb81 ; faldo:end ?pfse82 ; up:ligand ?ligand83 ; rdf:type up:Binding_Site_Annotation . ?pfsb81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?ligand83 rdfs:subClassOf chebi:29991 . ?pfs86 up:annotation ?annotation87 . ?annotation87 faldo:begin ?pfsb88 ; faldo:end ?pfse89 ; up:ligand ?ligand90 ; rdf:type up:Binding_Site_Annotation . ?pfsb88 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?ligand90 rdfs:subClassOf chebi:29991 . ?pfs93 up:annotation ?annotation94 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; up:ligand ?ligand97 ; rdf:type up:Binding_Site_Annotation . ?pfsb95 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?ligand97 rdfs:subClassOf chebi:18420 . ?pfs100 up:annotation ?annotation101 . ?annotation101 faldo:begin ?pfsb102 ; faldo:end ?pfse103 ; up:ligand ?ligand104 ; rdf:type up:Binding_Site_Annotation . ?pfsb102 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?pfse103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?ligand104 rdfs:subClassOf chebi:18420 . ?pfs107 up:annotation ?annotation108 . ?annotation108 faldo:begin ?pfsb109 ; faldo:end ?pfse110 ; up:ligand ?ligand111 ; rdf:type up:Binding_Site_Annotation . ?pfsb109 faldo:position ?thisPositionOn112 ; rdf:type faldo:ExactPosition . ?pfse110 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?ligand111 rdfs:subClassOf chebi:18420 . _:725761 a rdf:Statement ; up:attribution _:725722 ; rdf:subject ?gene0 ; rdf:predicate up:encodedBy ; rdf:object ?gene0 . _:725762 a rdf:Statement ; up:attribution _:725723 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:725763 a rdf:Statement ; up:attribution _:725724 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:725764 a rdf:Statement ; up:attribution _:725725 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:725765 a rdf:Statement ; up:attribution _:725726 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:30 . _:725766 a rdf:Statement ; up:attribution _:725727 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:725767 a rdf:Statement ; up:attribution _:725728 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:725768 a rdf:Statement ; up:attribution _:725729 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:725769 a rdf:Statement ; up:attribution _:725730 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:725770 a rdf:Statement ; up:attribution _:725731 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:648 . _:725771 a rdf:Statement ; up:attribution _:725732 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004815 . _:725772 a rdf:Statement ; up:attribution _:725733 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:725773 a rdf:Statement ; up:attribution _:725734 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006422 . _:725774 a rdf:Statement ; up:attribution _:725735 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:725775 a rdf:Statement ; up:attribution _:725736 ; rdf:subject ?case5 ; rdf:predicate up:recommendedName ; rdf:object ?name6 . _:725776 a rdf:Statement ; up:attribution _:725737 ; rdf:subject ?case5 ; rdf:predicate up:alternativeName ; rdf:object ?name7 . _:725777 a rdf:Statement ; up:attribution _:725738 ; rdf:subject ?case5 ; rdf:predicate up:alternativeName ; rdf:object ?name8 . _:725778 a rdf:Statement ; up:attribution _:725739 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:725779 a rdf:Statement ; up:attribution _:725740 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:725780 a rdf:Statement ; up:attribution _:725741 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:725781 a rdf:Statement ; up:attribution _:725742 ; rdf:subject ?case12 ; rdf:predicate up:recommendedName ; rdf:object ?name13 . _:725782 a rdf:Statement ; up:attribution _:725743 ; rdf:subject ?case12 ; rdf:predicate up:alternativeName ; rdf:object ?name14 . _:725783 a rdf:Statement ; up:attribution _:725744 ; rdf:subject ?case12 ; rdf:predicate up:alternativeName ; rdf:object ?name15 . _:725784 a rdf:Statement ; up:attribution _:725745 ; rdf:subject ?case16 ; rdf:predicate up:recommendedName ; rdf:object ?name17 . _:725785 a rdf:Statement ; up:attribution _:725746 ; rdf:subject ?case16 ; rdf:predicate up:alternativeName ; rdf:object ?name18 . _:725786 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:725787 a rdf:Statement ; up:attribution _:725747 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:725788 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:725789 a rdf:Statement ; up:attribution _:725748 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:725790 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:725791 a rdf:Statement ; up:attribution _:725749 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:725792 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:725793 a rdf:Statement ; up:attribution _:725750 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:725794 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:725795 a rdf:Statement ; up:attribution _:725751 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:725796 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:725797 a rdf:Statement ; up:attribution _:725752 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:725798 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:725799 a rdf:Statement ; up:attribution _:725753 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:725800 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:725801 a rdf:Statement ; up:attribution _:725754 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:725802 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:725803 a rdf:Statement ; up:attribution _:725755 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:725804 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:725805 a rdf:Statement ; up:attribution _:725756 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:725806 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:725807 a rdf:Statement ; up:attribution _:725757 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:725808 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:725809 a rdf:Statement ; up:attribution _:725758 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:725810 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:725811 a rdf:Statement ; up:attribution _:725759 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:725812 a rdf:Statement ; up:source unirule:MF_02075 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . _:725813 a rdf:Statement ; up:attribution _:725760 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02075 #Rule MF_02075 Created by:crivoire on:2016-09-29 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon114 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02075 . ?thisOrganism rdfs:subClassOf+ ?supertaxon114 . BIND(URI(CONCAT(STR(?this), '#MF_02075a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_02075a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_02075a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionQ9RVH4120 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9RVH4122 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9RVH4MF_02075115 . ?templateMotifSequenceMatchRegionQ9RVH4120 faldo:begin ?templateMotifSequenceMatchBeginQ9RVH4121 . ?templateMotifSequenceMatchBeginQ9RVH4121 faldo:position ?templateMotifSequenceMatchBeginPositionQ9RVH4116 ; faldo:reference isoform:Q9RVH4-1 . ?templateMotifSequenceProfileAlignmentOperationQ9RVH4122 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075126 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9RVH4MF_02075117 . ?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075125 . ?targetMotifMatchRegionMatchBeginMF_02075125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075118 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075126 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagNonDiscr_arch) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9RVH4MF_02075115, 1, (STRLEN(?templateMotifCigarQ9RVH4MF_02075115) - STRLEN(REPLACE(?templateMotifCigarQ9RVH4MF_02075115, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionQ9RVH4116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9RVH4MF_02075117, 1, (STRLEN(?targetMotifMatchCigarQ9RVH4MF_02075117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RVH4MF_02075117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9RVH4MF_02075117, 1, (STRLEN(?targetMotifMatchCigarQ9RVH4MF_02075117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RVH4MF_02075117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) . BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_02075118) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t129) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'P')) . BIND(URI(CONCAT(STR(?this), '#MF_02075a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionQ52428135 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428137 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075130 . ?templateMotifSequenceMatchRegionQ52428135 faldo:begin ?templateMotifSequenceMatchBeginQ52428136 . ?templateMotifSequenceMatchBeginQ52428136 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428131 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428137 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075132 . ?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075140 . ?targetMotifMatchRegionMatchBeginMF_02075140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075141 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagDiscr_arch) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075130, 1, (STRLEN(?templateMotifCigarQ52428MF_02075130) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075130, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionQ52428131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075132, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075132) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075132, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075132) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_02075133) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs2t144) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02075a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionQ52428150 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428152 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075145 . ?templateMotifSequenceMatchRegionQ52428150 faldo:begin ?templateMotifSequenceMatchBeginQ52428151 . ?templateMotifSequenceMatchBeginQ52428151 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428146 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428152 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075156 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075147 . ?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075155 . ?targetMotifMatchRegionMatchBeginMF_02075155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075148 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075156 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075145, 1, (STRLEN(?templateMotifCigarQ52428MF_02075145) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075145, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ52428146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075147, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075147) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075147, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075147) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_02075148) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075145, 1, (STRLEN(?templateMotifCigarQ52428MF_02075145) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075145, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionQ52428146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075147, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075147) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075147, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075147) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_02075148) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs3t161) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) . FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) . BIND(URI(CONCAT(STR(?this), '#MF_02075a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionQ52428167 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428169 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075162 . ?templateMotifSequenceMatchRegionQ52428167 faldo:begin ?templateMotifSequenceMatchBeginQ52428168 . ?templateMotifSequenceMatchBeginQ52428168 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428163 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428169 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075173 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075164 . ?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075172 . ?targetMotifMatchRegionMatchBeginMF_02075172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075165 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075173 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075162, 1, (STRLEN(?templateMotifCigarQ52428MF_02075162) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075162, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionQ52428163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075164, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075164) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075164, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075164) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_02075165) - 1) AS ?thisPositionOn43) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075162, 1, (STRLEN(?templateMotifCigarQ52428MF_02075162) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075162, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionQ52428163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075164, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075164) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075164, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075164) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) . BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_02075165) - 1) AS ?thisPositionOn44) . BIND(?this AS ?pfs3t178) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) . FILTER (REGEX('[RK]H[LV]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, (?thisPositionOn44 - ?thisPositionOn43)))) . BIND(URI(CONCAT(STR(?this), '#MF_02075a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionQ52428184 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428186 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075179 . ?templateMotifSequenceMatchRegionQ52428184 faldo:begin ?templateMotifSequenceMatchBeginQ52428185 . ?templateMotifSequenceMatchBeginQ52428185 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428180 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428186 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075190 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075181 . ?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075189 . ?targetMotifMatchRegionMatchBeginMF_02075189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075182 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075190 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075179, 1, (STRLEN(?templateMotifCigarQ52428MF_02075179) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075179, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionQ52428180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075181, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075181) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075181, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075181) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) . BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_02075182) - 1) AS ?thisPositionOn50) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075179, 1, (STRLEN(?templateMotifCigarQ52428MF_02075179) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075179, CONCAT('^(?:-*[^-]){', STR(((412 - ?templateMotifSequenceMatchBeginPositionQ52428180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075181, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075181) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075181, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075181) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) . BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_02075182) - 1) AS ?thisPositionOn51) . BIND(?this AS ?pfs3t195) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn50, (?thisPositionOn51 - ?thisPositionOn50)))) . BIND(URI(CONCAT(STR(?this), '#MF_02075a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch200 faldo:location ?templateMotifSequenceMatchRegionQ52428201 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428203 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075196 . ?templateMotifSequenceMatchRegionQ52428201 faldo:begin ?templateMotifSequenceMatchBeginQ52428202 . ?templateMotifSequenceMatchBeginQ52428202 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428197 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428203 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch204 faldo:location ?targetMotifMatchRegionMatch205 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075207 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075198 . ?targetMotifMatchRegionMatch205 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075206 . ?targetMotifMatchRegionMatchBeginMF_02075206 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075199 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075207 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075196, 1, (STRLEN(?templateMotifCigarQ52428MF_02075196) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075196, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionQ52428197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1208) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075198, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075198) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075198, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075198) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), '')))), '[^-]', ''))) AS ?step2209) . BIND(((?step2209 + ?targetMotifMatchRegionMatchBeginPositionMF_02075199) - 1) AS ?thisPositionOn56) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075196, 1, (STRLEN(?templateMotifCigarQ52428MF_02075196) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075196, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionQ52428197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075198, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075198) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075198, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075198) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_02075199) - 1) AS ?thisPositionOn57) . BIND(?this AS ?pfs3t212) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse55) . FILTER (REGEX('Q[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]K', SUBSTR(?thisSequenceValue, ?thisPositionOn56, (?thisPositionOn57 - ?thisPositionOn56)))) . BIND(URI(CONCAT(STR(?this), '#MF_02075a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionQ52428218 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428220 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075213 . ?templateMotifSequenceMatchRegionQ52428218 faldo:begin ?templateMotifSequenceMatchBeginQ52428219 . ?templateMotifSequenceMatchBeginQ52428219 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428214 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428220 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075224 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075215 . ?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075223 . ?targetMotifMatchRegionMatchBeginMF_02075223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075216 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075224 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075213, 1, (STRLEN(?templateMotifCigarQ52428MF_02075213) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075213, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionQ52428214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075215, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075215) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075215, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075215) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) . BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_02075216) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs3t227) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_02075a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionQ52428233 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428235 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075228 . ?templateMotifSequenceMatchRegionQ52428233 faldo:begin ?templateMotifSequenceMatchBeginQ52428234 . ?templateMotifSequenceMatchBeginQ52428234 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428229 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428235 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075239 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075230 . ?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075238 . ?targetMotifMatchRegionMatchBeginMF_02075238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075231 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075239 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075228, 1, (STRLEN(?templateMotifCigarQ52428MF_02075228) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075228, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ52428229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075230, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075230) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075230, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075230) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) . BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_02075231) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs3t242) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02075a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionQ52428248 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428250 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075243 . ?templateMotifSequenceMatchRegionQ52428248 faldo:begin ?templateMotifSequenceMatchBeginQ52428249 . ?templateMotifSequenceMatchBeginQ52428249 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428244 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428250 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075254 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075245 . ?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075253 . ?targetMotifMatchRegionMatchBeginMF_02075253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075246 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075254 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075243, 1, (STRLEN(?templateMotifCigarQ52428MF_02075243) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075243, CONCAT('^(?:-*[^-]){', STR(((361 - ?templateMotifSequenceMatchBeginPositionQ52428244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075245, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075245) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075245, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075245) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) . BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_02075246) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs3t257) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_02075a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionQ52428263 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428265 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075258 . ?templateMotifSequenceMatchRegionQ52428263 faldo:begin ?templateMotifSequenceMatchBeginQ52428264 . ?templateMotifSequenceMatchBeginQ52428264 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428259 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428265 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075269 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075260 . ?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075268 . ?targetMotifMatchRegionMatchBeginMF_02075268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075261 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075269 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075258, 1, (STRLEN(?templateMotifCigarQ52428MF_02075258) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075258, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionQ52428259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075260, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075260) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075260, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075260) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) . BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_02075261) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs3t272) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02075a80')) AS ?annotation80) . BIND(?this AS ?pfs79) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionQ52428278 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428280 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075273 . ?templateMotifSequenceMatchRegionQ52428278 faldo:begin ?templateMotifSequenceMatchBeginQ52428279 . ?templateMotifSequenceMatchBeginQ52428279 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428274 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428280 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075284 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075275 . ?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075283 . ?targetMotifMatchRegionMatchBeginMF_02075283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075276 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075284 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075273, 1, (STRLEN(?templateMotifCigarQ52428MF_02075273) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075273, CONCAT('^(?:-*[^-]){', STR(((368 - ?templateMotifSequenceMatchBeginPositionQ52428274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075275, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075275) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075275, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075275) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) . BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_02075276) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs3t287) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02075a87')) AS ?annotation87) . BIND(?this AS ?pfs86) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch292 faldo:location ?templateMotifSequenceMatchRegionQ52428293 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428295 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075288 . ?templateMotifSequenceMatchRegionQ52428293 faldo:begin ?templateMotifSequenceMatchBeginQ52428294 . ?templateMotifSequenceMatchBeginQ52428294 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428289 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428295 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch296 faldo:location ?targetMotifMatchRegionMatch297 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075299 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075290 . ?targetMotifMatchRegionMatch297 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075298 . ?targetMotifMatchRegionMatchBeginMF_02075298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075291 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075299 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075288, 1, (STRLEN(?templateMotifCigarQ52428MF_02075288) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075288, CONCAT('^(?:-*[^-]){', STR(((361 - ?templateMotifSequenceMatchBeginPositionQ52428289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1300) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075290, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075290) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075290, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075290) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), '')))), '[^-]', ''))) AS ?step2301) . BIND(((?step2301 + ?targetMotifMatchRegionMatchBeginPositionMF_02075291) - 1) AS ?thisPositionOn98) . BIND(?thisPositionOn98 AS ?thisPositionOn99) . BIND(?this AS ?pfs4t302) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_02075a94')) AS ?annotation94) . BIND(?this AS ?pfs93) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch307 faldo:location ?templateMotifSequenceMatchRegionQ52428308 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428310 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075303 . ?templateMotifSequenceMatchRegionQ52428308 faldo:begin ?templateMotifSequenceMatchBeginQ52428309 . ?templateMotifSequenceMatchBeginQ52428309 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428304 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428310 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch311 faldo:location ?targetMotifMatchRegionMatch312 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075314 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075305 . ?targetMotifMatchRegionMatch312 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075313 . ?targetMotifMatchRegionMatchBeginMF_02075313 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075306 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075314 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075303, 1, (STRLEN(?templateMotifCigarQ52428MF_02075303) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075303, CONCAT('^(?:-*[^-]){', STR(((361 - ?templateMotifSequenceMatchBeginPositionQ52428304) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1315) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075305, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075305) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075305, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075305) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), '')))), '[^-]', ''))) AS ?step2316) . BIND(((?step2316 + ?targetMotifMatchRegionMatchBeginPositionMF_02075306) - 1) AS ?thisPositionOn105) . BIND(?thisPositionOn105 AS ?thisPositionOn106) . BIND(?this AS ?pfs4t317) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_02075a101')) AS ?annotation101) . BIND(?this AS ?pfs100) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch322 faldo:location ?templateMotifSequenceMatchRegionQ52428323 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428325 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ52428MF_02075318 . ?templateMotifSequenceMatchRegionQ52428323 faldo:begin ?templateMotifSequenceMatchBeginQ52428324 . ?templateMotifSequenceMatchBeginQ52428324 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428319 ; faldo:reference isoform:Q52428-1 . ?templateMotifSequenceProfileAlignmentOperationQ52428325 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?targetMotifMatch326 faldo:location ?targetMotifMatchRegionMatch327 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075329 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ52428MF_02075320 . ?targetMotifMatchRegionMatch327 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075328 . ?targetMotifMatchRegionMatchBeginMF_02075328 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075321 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02075329 edam:has_input signature:MF_02075 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075318, 1, (STRLEN(?templateMotifCigarQ52428MF_02075318) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075318, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionQ52428319) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1330) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075320, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075320) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1330), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075320, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075320) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1330), '}'), '')))), '[^-]', ''))) AS ?step2331) . BIND(((?step2331 + ?targetMotifMatchRegionMatchBeginPositionMF_02075321) - 1) AS ?thisPositionOn112) . BIND(?thisPositionOn112 AS ?thisPositionOn113) . BIND(?this AS ?pfs4t332) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02075a108')) AS ?annotation108) . BIND(?this AS ?pfs107) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag333) . BIND(URI(CONCAT(STR(?this), '#MF_02075a6')) AS ?name6) . BIND(URI(CONCAT(STR(?this), '#MF_02075a7')) AS ?name7) . BIND(URI(CONCAT(STR(?this), '#MF_02075a8')) AS ?name8) . } BIND(IF(BOUND(?tagDiscr_arch), ?caseWithTag333, ?UNBOUND_VARIABLE) AS ?case5) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag334) . } BIND(IF(BOUND(?tagNonDiscr_arch), ?caseWithTag334, ?UNBOUND_VARIABLE) AS ?case9) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag335) . } BIND(IF(BOUND(?tagNonDiscr_arch), ?caseWithTag335, ?UNBOUND_VARIABLE) AS ?case10) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag336) . BIND(URI(CONCAT(STR(?this), '#MF_02075a13')) AS ?name13) . BIND(URI(CONCAT(STR(?this), '#MF_02075a14')) AS ?name14) . BIND(URI(CONCAT(STR(?this), '#MF_02075a15')) AS ?name15) . } BIND(IF((BOUND(?tagNonDiscr_arch) || BOUND(?tagDiscr_arch)), ?caseWithTag336, ?UNBOUND_VARIABLE) AS ?case12) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag337) . BIND(URI(CONCAT(STR(?this), '#MF_02075a17')) AS ?name17) . BIND(URI(CONCAT(STR(?this), '#MF_02075a18')) AS ?name18) . } BIND(IF((BOUND(?tagNonDiscr_arch) || BOUND(?tagDiscr_arch)), ?caseWithTag337, ?UNBOUND_VARIABLE) AS ?case16) . }