@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:741235 up:source unirule:MF_02089 . _:741236 up:source unirule:MF_02089 . _:741237 up:source unirule:MF_02089 . _:741238 up:source unirule:MF_02089 . _:741239 up:source unirule:MF_02089 . _:741240 up:source unirule:MF_02089 . _:741241 up:source unirule:MF_02089 . _:741242 up:source unirule:MF_02089 . _:741243 up:source unirule:MF_02089 . _:741244 up:source unirule:MF_02089 . _:741245 up:source unirule:MF_02089 . _:741246 up:source unirule:MF_02089 . _:741247 up:source unirule:MF_02089 . _:741248 up:source unirule:MF_02089 . _:741249 up:source unirule:MF_02089 . _:741250 up:source unirule:MF_02089 . _:741251 up:source unirule:MF_02089 . _:741252 up:source unirule:MF_02089 . _:741253 up:source unirule:MF_02089 . _:741254 up:source unirule:MF_02089 . _:741255 up:source unirule:MF_02089 . _:741256 up:source unirule:MF_02089 . _:741257 up:source unirule:MF_02089 . _:741258 up:source unirule:MF_02089 . _:741259 up:source unirule:MF_02089 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0006400 , GO:0008616 , GO:0052693 , keyword:1015 , keyword:560 , keyword:671 , keyword:676 , keyword:819 ; up:recommendedName ?name0 . ?name0 up:ecName '1.17.99.6' ; up:fullName 'Epoxyqueuosine reductase QueH' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Queuosine biosynthesis protein QueH' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'queH' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity ; up:enzymeClass . ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'tRNA modification; tRNA-queuosine biosynthesis.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the QueH family.' . ?case8 up:classifiedWith GO:0051539 , keyword:408 , keyword:411 , keyword:479 , keyword:4 . ?pfs9 up:annotation ?annotation10 , ?annotation16 , ?annotation22 , ?annotation28 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:49883 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:49883 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:49883 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:49883 . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; rdf:type up:Disulfide_Bond_Annotation ; rdfs:comment 'Redox-active' . ?pfsb36 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . _:741260 a rdf:Statement ; up:attribution _:741235 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:741261 a rdf:Statement ; up:attribution _:741236 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:741262 a rdf:Statement ; up:attribution _:741237 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:741263 a rdf:Statement ; up:attribution _:741238 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:741264 a rdf:Statement ; up:attribution _:741239 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:741265 a rdf:Statement ; up:attribution _:741240 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:741266 a rdf:Statement ; up:attribution _:741241 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:741267 a rdf:Statement ; up:attribution _:741242 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1015 . _:741268 a rdf:Statement ; up:attribution _:741243 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:741269 a rdf:Statement ; up:attribution _:741244 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:671 . _:741270 a rdf:Statement ; up:attribution _:741245 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:676 . _:741271 a rdf:Statement ; up:attribution _:741246 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:741272 a rdf:Statement ; up:attribution _:741247 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0052693 . _:741273 a rdf:Statement ; up:attribution _:741248 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008616 . _:741274 a rdf:Statement ; up:attribution _:741249 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006400 . _:741275 a rdf:Statement ; up:attribution _:741250 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:4 . _:741276 a rdf:Statement ; up:attribution _:741251 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:741277 a rdf:Statement ; up:attribution _:741252 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:741278 a rdf:Statement ; up:attribution _:741253 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:741279 a rdf:Statement ; up:attribution _:741254 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object GO:0051539 . _:741280 a rdf:Statement ; up:source unirule:MF_02089 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:741281 a rdf:Statement ; up:attribution _:741255 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:741282 a rdf:Statement ; up:source unirule:MF_02089 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:741283 a rdf:Statement ; up:attribution _:741256 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:741284 a rdf:Statement ; up:source unirule:MF_02089 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:741285 a rdf:Statement ; up:attribution _:741257 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:741286 a rdf:Statement ; up:source unirule:MF_02089 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:741287 a rdf:Statement ; up:attribution _:741258 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:741288 a rdf:Statement ; up:source unirule:MF_02089 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:741289 a rdf:Statement ; up:attribution _:741259 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02089 #Rule MF_02089 Created by:? on:2017-03-23 Modified by:Catherine Rivoire on:2025-06-12 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02089 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_02089a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02089a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02089a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02089a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02089a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_02089a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionA0A0H3JUG645 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H3JUG647 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA0A0H3JUG6MF_0208940 . ?templateMotifSequenceMatchRegionA0A0H3JUG645 faldo:begin ?templateMotifSequenceMatchBeginA0A0H3JUG646 . ?templateMotifSequenceMatchBeginA0A0H3JUG646 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H3JUG641 ; faldo:reference isoform:A0A0H3JUG6-1 . ?templateMotifSequenceProfileAlignmentOperationA0A0H3JUG647 edam:has_input signature:MF_02089 ; rdf:type edam:operation_0300 . ?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0208951 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA0A0H3JUG6MF_0208942 . ?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0208950 . ?targetMotifMatchRegionMatchBeginMF_0208950 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0208943 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0208951 edam:has_input signature:MF_02089 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208940, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208940) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208940, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG641) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) . BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0208943) - 1) AS ?thisPositionOn14) . BIND(?thisPositionOn14 AS ?thisPositionOn15) . BIND(?this AS ?pfs1t54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208940, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208940) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208940, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG641) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) . BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0208943) - 1) AS ?thisPositionOn20) . BIND(?thisPositionOn20 AS ?thisPositionOn21) . BIND(?this AS ?pfs1t57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208940, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208940) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208940, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG641) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) . BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0208943) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208940, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208940) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208940, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG641) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) . BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0208943) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs1t63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionA0A0H3JUG669 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H3JUG671 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA0A0H3JUG6MF_0208964 . ?templateMotifSequenceMatchRegionA0A0H3JUG669 faldo:begin ?templateMotifSequenceMatchBeginA0A0H3JUG670 . ?templateMotifSequenceMatchBeginA0A0H3JUG670 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H3JUG665 ; faldo:reference isoform:A0A0H3JUG6-1 . ?templateMotifSequenceProfileAlignmentOperationA0A0H3JUG671 edam:has_input signature:MF_02089 ; rdf:type edam:operation_0300 . ?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0208975 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA0A0H3JUG6MF_0208966 . ?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0208974 . ?targetMotifMatchRegionMatchBeginMF_0208974 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0208967 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0208975 edam:has_input signature:MF_02089 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208964, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208964) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208964, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG665) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208966) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208966) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) . BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0208967) - 1) AS ?thisPositionOn38) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208964, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208964) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208964, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG665) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208966) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208966) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) . BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0208967) - 1) AS ?thisPositionOn39) . BIND(?this AS ?pfs2t80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)))) . BIND(URI(CONCAT(STR(?this), '#MF_02089a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag81) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag81, ?UNBOUND_VARIABLE) AS ?case8) . } """ . .