@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:750510 up:source unirule:MF_02115 . _:750511 up:source unirule:MF_02115 . _:750512 up:source unirule:MF_02115 . _:750513 up:source unirule:MF_02115 . _:750514 up:source unirule:MF_02115 . _:750515 up:source unirule:MF_02115 . _:750516 up:source unirule:MF_02115 . _:750517 up:source unirule:MF_02115 . _:750518 up:source unirule:MF_02115 . _:750519 up:source unirule:MF_02115 . _:750520 up:source unirule:MF_02115 . _:750521 up:source unirule:MF_02115 . _:750522 up:source unirule:MF_02115 . _:750523 up:source unirule:MF_02115 . _:750524 up:source unirule:MF_02115 . _:750525 up:source unirule:MF_02115 . _:750526 up:source unirule:MF_02115 . _:750527 up:source unirule:MF_02115 . _:750528 up:source unirule:MF_02115 . _:750529 up:source unirule:MF_02115 . _:750530 up:source unirule:MF_02115 . _:750531 up:source unirule:MF_02115 . _:750532 up:source unirule:MF_02115 . _:750533 up:source unirule:MF_02115 . _:750534 up:source unirule:MF_02115 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation8 , ?annotation9 , ?annotation10 ; up:classifiedWith GO:0003919 , GO:0005524 , GO:0006747 , GO:0046444 , keyword:274 , keyword:285 , keyword:288 , keyword:547 , keyword:548 , keyword:67 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.2' ; up:fullName 'FAD synthase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'FMN adenylyltransferase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Flavin adenine dinucleotide synthase' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'ribL' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity ; up:enzymeClass . ?annotation7 up:cofactor chebi:60240 ; rdf:type up:Cofactor_Annotation . ?annotation8 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: step 1/1.' . ?annotation9 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the archaeal FAD synthase family.' . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; up:ligand ?ligand15 ; rdf:type up:Binding_Site_Annotation . ?pfsb13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?ligand15 rdfs:subClassOf chebi:30616 . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:30616 . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:30616 . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:30616 . _:750535 a rdf:Statement ; up:attribution _:750510 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:750536 a rdf:Statement ; up:attribution _:750511 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:750537 a rdf:Statement ; up:attribution _:750512 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:750538 a rdf:Statement ; up:attribution _:750513 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:750539 a rdf:Statement ; up:attribution _:750514 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:750540 a rdf:Statement ; up:attribution _:750515 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:750541 a rdf:Statement ; up:attribution _:750516 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:750542 a rdf:Statement ; up:attribution _:750517 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:750543 a rdf:Statement ; up:attribution _:750518 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:750544 a rdf:Statement ; up:attribution _:750519 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:750545 a rdf:Statement ; up:attribution _:750520 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:750546 a rdf:Statement ; up:attribution _:750521 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:274 . _:750547 a rdf:Statement ; up:attribution _:750522 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:285 . _:750548 a rdf:Statement ; up:attribution _:750523 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:288 . _:750549 a rdf:Statement ; up:attribution _:750524 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:750550 a rdf:Statement ; up:attribution _:750525 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:750551 a rdf:Statement ; up:attribution _:750526 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:750552 a rdf:Statement ; up:attribution _:750527 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003919 . _:750553 a rdf:Statement ; up:attribution _:750528 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:750554 a rdf:Statement ; up:attribution _:750529 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006747 . _:750555 a rdf:Statement ; up:attribution _:750530 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0046444 . _:750556 a rdf:Statement ; up:source unirule:MF_02115 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:750557 a rdf:Statement ; up:attribution _:750531 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:750558 a rdf:Statement ; up:source unirule:MF_02115 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:750559 a rdf:Statement ; up:attribution _:750532 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:750560 a rdf:Statement ; up:source unirule:MF_02115 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:750561 a rdf:Statement ; up:attribution _:750533 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:750562 a rdf:Statement ; up:source unirule:MF_02115 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:750563 a rdf:Statement ; up:attribution _:750534 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02115 #Rule MF_02115 Created by:? on:2011-02-16 Modified by:Edouard de Castro on:2024-09-02 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02115 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_02115a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02115a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02115a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_02115a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02115a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_02115a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_02115a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_02115a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_02115a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionQ979C244 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ979C246 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ979C2MF_0211539 . ?templateMotifSequenceMatchRegionQ979C244 faldo:begin ?templateMotifSequenceMatchBeginQ979C245 . ?templateMotifSequenceMatchBeginQ979C245 faldo:position ?templateMotifSequenceMatchBeginPositionQ979C240 ; faldo:reference isoform:Q979C2-1 . ?templateMotifSequenceProfileAlignmentOperationQ979C246 edam:has_input signature:MF_02115 ; rdf:type edam:operation_0300 . ?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211550 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ979C2MF_0211541 . ?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211549 . ?targetMotifMatchRegionMatchBeginMF_0211549 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211542 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0211550 edam:has_input signature:MF_02115 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211539, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211539) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211539, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionQ979C240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211541, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211541) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211541, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211541, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211541) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211541, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) . BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0211542) - 1) AS ?thisPositionOn16) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211539, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211539) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211539, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ979C240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211541, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211541) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211541, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211541, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211541) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211541, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) . BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0211542) - 1) AS ?thisPositionOn17) . BIND(?this AS ?pfs1t55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) . FILTER (REGEX('[VTA]F', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) . BIND(URI(CONCAT(STR(?this), '#MF_02115a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionQ979C261 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ979C263 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ979C2MF_0211556 . ?templateMotifSequenceMatchRegionQ979C261 faldo:begin ?templateMotifSequenceMatchBeginQ979C262 . ?templateMotifSequenceMatchBeginQ979C262 faldo:position ?templateMotifSequenceMatchBeginPositionQ979C257 ; faldo:reference isoform:Q979C2-1 . ?templateMotifSequenceProfileAlignmentOperationQ979C263 edam:has_input signature:MF_02115 ; rdf:type edam:operation_0300 . ?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211567 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ979C2MF_0211558 . ?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211566 . ?targetMotifMatchRegionMatchBeginMF_0211566 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211559 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0211567 edam:has_input signature:MF_02115 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211556, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211556) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211556, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionQ979C257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211558, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211558) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211558, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211558, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211558) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211558, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) . BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0211559) - 1) AS ?thisPositionOn23) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211556, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211556) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211556, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionQ979C257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211558, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211558) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211558, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211558, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211558) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211558, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) . BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0211559) - 1) AS ?thisPositionOn24) . BIND(?this AS ?pfs1t72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]H', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) . BIND(URI(CONCAT(STR(?this), '#MF_02115a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionQ979C278 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ979C280 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ979C2MF_0211573 . ?templateMotifSequenceMatchRegionQ979C278 faldo:begin ?templateMotifSequenceMatchBeginQ979C279 . ?templateMotifSequenceMatchBeginQ979C279 faldo:position ?templateMotifSequenceMatchBeginPositionQ979C274 ; faldo:reference isoform:Q979C2-1 . ?templateMotifSequenceProfileAlignmentOperationQ979C280 edam:has_input signature:MF_02115 ; rdf:type edam:operation_0300 . ?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211584 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ979C2MF_0211575 . ?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211583 . ?targetMotifMatchRegionMatchBeginMF_0211583 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211576 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0211584 edam:has_input signature:MF_02115 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211573, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211573) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211573, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionQ979C274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211575, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211575) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211575, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211575, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211575) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211575, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) . BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0211576) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs1t87) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02115a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ979C293 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ979C295 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ979C2MF_0211588 . ?templateMotifSequenceMatchRegionQ979C293 faldo:begin ?templateMotifSequenceMatchBeginQ979C294 . ?templateMotifSequenceMatchBeginQ979C294 faldo:position ?templateMotifSequenceMatchBeginPositionQ979C289 ; faldo:reference isoform:Q979C2-1 . ?templateMotifSequenceProfileAlignmentOperationQ979C295 edam:has_input signature:MF_02115 ; rdf:type edam:operation_0300 . ?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211599 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ979C2MF_0211590 . ?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211598 . ?targetMotifMatchRegionMatchBeginMF_0211598 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211591 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0211599 edam:has_input signature:MF_02115 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211588, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211588) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211588, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionQ979C289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211590, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211590) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211590, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211590, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211590) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211590, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) . BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0211591) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER (REGEX('[YHF]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02115a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } } """ . .