@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:754776 up:source unirule:MF_02124 . _:754777 up:source unirule:MF_02124 . _:754778 up:source unirule:MF_02124 . _:754779 up:source unirule:MF_02124 . _:754780 up:source unirule:MF_02124 . _:754781 up:source unirule:MF_02124 . _:754782 up:source unirule:MF_02124 . _:754783 up:source unirule:MF_02124 . _:754784 up:source unirule:MF_02124 . _:754785 up:source unirule:MF_02124 . _:754786 up:source unirule:MF_02124 . _:754787 up:source unirule:MF_02124 . _:754788 up:source unirule:MF_02124 . _:754789 up:source unirule:MF_02124 . _:754790 up:source unirule:MF_02124 . _:754791 up:source unirule:MF_02124 . _:754792 up:source unirule:MF_02124 . _:754793 up:source unirule:MF_02124 . _:754794 up:source unirule:MF_02124 . _:754795 up:source unirule:MF_02124 . _:754796 up:source unirule:MF_02124 . _:754797 up:source unirule:MF_02124 . _:754798 up:source unirule:MF_02124 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0016758 , GO:0030979 , keyword:119 , keyword:328 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.4.99.16' ; up:fullName 'Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase' ; up:shortName 'GMPMT' ; rdf:type up:Structured_Name . ?name1 up:fullName '(1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'glgE' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity ; up:enzymeClass . ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the glycosyl hydrolase 13 family. GlgE subfamily.' . ?case8 up:classifiedWith GO:0005978 , keyword:320 , keyword:321 . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:63576 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb18 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:63576 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:63576 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf chebi:63576 . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:63576 . ?pfs56 up:annotation ?annotation57 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; rdf:type up:Site_Annotation ; rdfs:comment 'Transition state stabilizer' . ?pfsb58 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . _:754799 a rdf:Statement ; up:attribution _:754776 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:754800 a rdf:Statement ; up:attribution _:754777 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:754801 a rdf:Statement ; up:attribution _:754778 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:754802 a rdf:Statement ; up:attribution _:754779 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:754803 a rdf:Statement ; up:attribution _:754780 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:754804 a rdf:Statement ; up:attribution _:754781 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:754805 a rdf:Statement ; up:attribution _:754782 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:754806 a rdf:Statement ; up:attribution _:754783 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:119 . _:754807 a rdf:Statement ; up:attribution _:754784 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:328 . _:754808 a rdf:Statement ; up:attribution _:754785 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:754809 a rdf:Statement ; up:attribution _:754786 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016758 . _:754810 a rdf:Statement ; up:attribution _:754787 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030979 . _:754811 a rdf:Statement ; up:attribution _:754788 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:320 . _:754812 a rdf:Statement ; up:attribution _:754789 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:321 . _:754813 a rdf:Statement ; up:attribution _:754790 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005978 . _:754814 a rdf:Statement ; up:source unirule:MF_02124 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:754815 a rdf:Statement ; up:attribution _:754791 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:754816 a rdf:Statement ; up:source unirule:MF_02124 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:754817 a rdf:Statement ; up:attribution _:754792 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:754818 a rdf:Statement ; up:source unirule:MF_02124 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:754819 a rdf:Statement ; up:attribution _:754793 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:754820 a rdf:Statement ; up:source unirule:MF_02124 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:754821 a rdf:Statement ; up:attribution _:754794 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:754822 a rdf:Statement ; up:source unirule:MF_02124 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:754823 a rdf:Statement ; up:attribution _:754795 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:754824 a rdf:Statement ; up:source unirule:MF_02124 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:754825 a rdf:Statement ; up:attribution _:754796 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:754826 a rdf:Statement ; up:source unirule:MF_02124 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:754827 a rdf:Statement ; up:attribution _:754797 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:754828 a rdf:Statement ; up:source unirule:MF_02124 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:754829 a rdf:Statement ; up:attribution _:754798 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02124 #Rule MF_02124 Created by:? on:2011-09-29 Modified by:Edouard de Castro on:2024-09-02 VALUES ?supertaxon62 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02124 . ?thisOrganism rdfs:subClassOf+ ?supertaxon62 . BIND(URI(CONCAT(STR(?this), '#MF_02124a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02124a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02124a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02124a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02124a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_02124a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionQ9L1K268 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K270 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9L1K2MF_0212463 . ?templateMotifSequenceMatchRegionQ9L1K268 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K269 . ?templateMotifSequenceMatchBeginQ9L1K269 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K264 ; faldo:reference isoform:Q9L1K2-1 . ?templateMotifSequenceProfileAlignmentOperationQ9L1K270 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . ?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0212474 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9L1K2MF_0212465 . ?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0212473 . ?targetMotifMatchRegionMatchBeginMF_0212473 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212466 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0212474 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_0212463, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_0212463) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_0212463, CONCAT('^(?:-*[^-]){', STR(((534 - ?templateMotifSequenceMatchBeginPositionQ9L1K264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212465, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212465) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212465, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212465) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) . BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0212466) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_0212463, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_0212463) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_0212463, CONCAT('^(?:-*[^-]){', STR(((535 - ?templateMotifSequenceMatchBeginPositionQ9L1K264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212465, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212465) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212465, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212465) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) . BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0212466) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER (REGEX('K[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) . BIND(URI(CONCAT(STR(?this), '#MF_02124a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionQ9L1K285 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K287 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9L1K2MF_0212480 . ?templateMotifSequenceMatchRegionQ9L1K285 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K286 . ?templateMotifSequenceMatchBeginQ9L1K286 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K281 ; faldo:reference isoform:Q9L1K2-1 . ?templateMotifSequenceProfileAlignmentOperationQ9L1K287 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . ?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0212491 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9L1K2MF_0212482 . ?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0212490 . ?targetMotifMatchRegionMatchBeginMF_0212490 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212483 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0212491 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_0212480, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_0212480) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_0212480, CONCAT('^(?:-*[^-]){', STR(((394 - ?templateMotifSequenceMatchBeginPositionQ9L1K281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212482, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212482) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212482, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212482) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) . BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0212483) - 1) AS ?thisPositionOn20) . BIND(?thisPositionOn20 AS ?thisPositionOn21) . BIND(?this AS ?pfs1t94) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02124a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2100 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2102 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9L1K2MF_0212495 . ?templateMotifSequenceMatchRegionQ9L1K2100 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2101 . ?templateMotifSequenceMatchBeginQ9L1K2101 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K296 ; faldo:reference isoform:Q9L1K2-1 . ?templateMotifSequenceProfileAlignmentOperationQ9L1K2102 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . ?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124106 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9L1K2MF_0212497 . ?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124105 . ?targetMotifMatchRegionMatchBeginMF_02124105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212498 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02124106 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_0212495, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_0212495) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_0212495, CONCAT('^(?:-*[^-]){', STR(((423 - ?templateMotifSequenceMatchBeginPositionQ9L1K296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212497, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212497) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212497, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212497) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) . BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0212498) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_02124a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2115 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2117 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9L1K2MF_02124110 . ?templateMotifSequenceMatchRegionQ9L1K2115 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2116 . ?templateMotifSequenceMatchBeginQ9L1K2116 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K2111 ; faldo:reference isoform:Q9L1K2-1 . ?templateMotifSequenceProfileAlignmentOperationQ9L1K2117 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . ?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124121 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9L1K2MF_02124112 . ?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124120 . ?targetMotifMatchRegionMatchBeginMF_02124120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02124113 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02124121 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_02124110, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_02124110) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_02124110, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionQ9L1K2111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124112, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124112) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124112, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124112) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) . BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_02124113) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t124) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02124a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2130 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2132 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9L1K2MF_02124125 . ?templateMotifSequenceMatchRegionQ9L1K2130 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2131 . ?templateMotifSequenceMatchBeginQ9L1K2131 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K2126 ; faldo:reference isoform:Q9L1K2-1 . ?templateMotifSequenceProfileAlignmentOperationQ9L1K2132 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . ?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124136 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9L1K2MF_02124127 . ?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124135 . ?targetMotifMatchRegionMatchBeginMF_02124135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02124128 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02124136 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_02124125, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_02124125) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_02124125, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionQ9L1K2126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124127, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124127) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124127, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124127) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) . BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_02124128) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t139) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_02124a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2145 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2147 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9L1K2MF_02124140 . ?templateMotifSequenceMatchRegionQ9L1K2145 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2146 . ?templateMotifSequenceMatchBeginQ9L1K2146 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K2141 ; faldo:reference isoform:Q9L1K2-1 . ?templateMotifSequenceProfileAlignmentOperationQ9L1K2147 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . ?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124151 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9L1K2MF_02124142 . ?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124150 . ?targetMotifMatchRegionMatchBeginMF_02124150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02124143 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02124151 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_02124140, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_02124140) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_02124140, CONCAT('^(?:-*[^-]){', STR(((359 - ?templateMotifSequenceMatchBeginPositionQ9L1K2141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124142, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124142) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124142, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124142) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) . BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_02124143) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs1t154) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02124a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2160 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2162 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9L1K2MF_02124155 . ?templateMotifSequenceMatchRegionQ9L1K2160 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2161 . ?templateMotifSequenceMatchBeginQ9L1K2161 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K2156 ; faldo:reference isoform:Q9L1K2-1 . ?templateMotifSequenceProfileAlignmentOperationQ9L1K2162 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . ?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124166 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9L1K2MF_02124157 . ?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124165 . ?targetMotifMatchRegionMatchBeginMF_02124165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02124158 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02124166 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_02124155, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_02124155) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_02124155, CONCAT('^(?:-*[^-]){', STR(((395 - ?templateMotifSequenceMatchBeginPositionQ9L1K2156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124157, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124157) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124157, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124157) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) . BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_02124158) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs1t169) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_02124a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2175 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2177 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9L1K2MF_02124170 . ?templateMotifSequenceMatchRegionQ9L1K2175 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2176 . ?templateMotifSequenceMatchBeginQ9L1K2176 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K2171 ; faldo:reference isoform:Q9L1K2-1 . ?templateMotifSequenceProfileAlignmentOperationQ9L1K2177 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . ?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124181 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9L1K2MF_02124172 . ?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124180 . ?targetMotifMatchRegionMatchBeginMF_02124180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02124173 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02124181 edam:has_input signature:MF_02124 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_02124170, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_02124170) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_02124170, CONCAT('^(?:-*[^-]){', STR(((480 - ?templateMotifSequenceMatchBeginPositionQ9L1K2171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124172, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124172, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) . BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_02124173) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs1t184) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02124a57')) AS ?annotation57) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1763 . BIND(?this AS ?case8) . } } """ . .