@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:771188 up:source unirule:MF_02232 . _:771189 up:source unirule:MF_02232 . _:771190 up:source unirule:MF_02232 . _:771191 up:source unirule:MF_02232 . _:771192 up:source unirule:MF_02232 . _:771193 up:source unirule:MF_02232 . _:771194 up:source unirule:MF_02232 . _:771195 up:source unirule:MF_02232 . _:771196 up:source unirule:MF_02232 . _:771197 up:source unirule:MF_02232 . _:771198 up:source unirule:MF_02232 . _:771199 up:source unirule:MF_02232 . _:771200 up:source unirule:MF_02232 . _:771201 up:source unirule:MF_02232 . _:771202 up:source unirule:MF_02232 . _:771203 up:source unirule:MF_02232 . _:771204 up:source unirule:MF_02232 . _:771205 up:source unirule:MF_02232 . _:771206 up:source unirule:MF_02232 . _:771207 up:source unirule:MF_02232 . _:771208 up:source unirule:MF_02232 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation8 , ?annotation10 , ?annotation11 , ?annotation12 ; up:classifiedWith GO:0006744 , keyword:831 ; up:recommendedName ?name0 . ?name0 up:ecName '1.97.1.15' ; up:fullName 'Ubiquinone biosynthesis hydroxylase UbiU' ; rdf:type up:Structured_Name . ?name1 up:fullName '2-(all-trans-polyprenyl)phenol 6-hydroxylase subunit UbiU' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'ubiU' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Component of the UbiUV hydroxylase, which is involved in the oxygen-independent ubiquinone (coenzyme Q) biosynthesis. It catalyzes the three hydroxylation steps, using prephenate as the oxygen donor.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity ; up:enzymeClass . ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity ; up:enzymeClass . ?annotation8 up:activity ?activity9 ; rdf:type up:Catalytic_Activity_Annotation . ?activity9 up:catalyticActivity ; up:enzymeClass . ?annotation10 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; ubiquinone biosynthesis.' . ?annotation11 a up:Subunit_Annotation ; rdfs:comment 'Forms a heterodimer with UbiV.' . ?annotation12 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the peptidase U32 family. UbiU subfamily.' . ?case13 up:classifiedWith GO:0051539 , keyword:408 , keyword:411 , keyword:479 , keyword:4 . ?pfs14 up:annotation ?annotation15 , ?annotation21 , ?annotation27 , ?annotation33 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:49883 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:49883 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:49883 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:49883 . _:771209 a rdf:Statement ; up:attribution _:771188 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:771210 a rdf:Statement ; up:attribution _:771189 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:771211 a rdf:Statement ; up:attribution _:771190 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:771212 a rdf:Statement ; up:attribution _:771191 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:771213 a rdf:Statement ; up:attribution _:771192 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:771214 a rdf:Statement ; up:attribution _:771193 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:771215 a rdf:Statement ; up:attribution _:771194 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:771216 a rdf:Statement ; up:attribution _:771195 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:771217 a rdf:Statement ; up:attribution _:771196 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:771218 a rdf:Statement ; up:attribution _:771197 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:771219 a rdf:Statement ; up:attribution _:771198 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:831 . _:771220 a rdf:Statement ; up:attribution _:771199 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006744 . _:771221 a rdf:Statement ; up:attribution _:771200 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:4 . _:771222 a rdf:Statement ; up:attribution _:771201 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:771223 a rdf:Statement ; up:attribution _:771202 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:771224 a rdf:Statement ; up:attribution _:771203 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:771225 a rdf:Statement ; up:attribution _:771204 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object GO:0051539 . _:771226 a rdf:Statement ; up:source unirule:MF_02232 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:771227 a rdf:Statement ; up:attribution _:771205 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:771228 a rdf:Statement ; up:source unirule:MF_02232 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:771229 a rdf:Statement ; up:attribution _:771206 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:771230 a rdf:Statement ; up:source unirule:MF_02232 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:771231 a rdf:Statement ; up:attribution _:771207 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:771232 a rdf:Statement ; up:source unirule:MF_02232 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:771233 a rdf:Statement ; up:attribution _:771208 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02232 #Rule MF_02232 Created by:? on:2019-10-01 Modified by:Catherine Rivoire on:2025-04-08 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02232 . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(URI(CONCAT(STR(?this), '#MF_02232a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02232a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02232a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02232a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02232a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_02232a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_02232a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_02232a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_02232a12')) AS ?annotation12) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionP4552744 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4552746 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP45527MF_0223239 . ?templateMotifSequenceMatchRegionP4552744 faldo:begin ?templateMotifSequenceMatchBeginP4552745 . ?templateMotifSequenceMatchBeginP4552745 faldo:position ?templateMotifSequenceMatchBeginPositionP4552740 ; faldo:reference isoform:P45527-1 . ?templateMotifSequenceProfileAlignmentOperationP4552746 edam:has_input signature:MF_02232 ; rdf:type edam:operation_0300 . ?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223250 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP45527MF_0223241 . ?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223249 . ?targetMotifMatchRegionMatchBeginMF_0223249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223242 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0223250 edam:has_input signature:MF_02232 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45527MF_0223239, 1, (STRLEN(?templateMotifCigarP45527MF_0223239) - STRLEN(REPLACE(?templateMotifCigarP45527MF_0223239, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP4552740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) . BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0223242) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45527MF_0223239, 1, (STRLEN(?templateMotifCigarP45527MF_0223239) - STRLEN(REPLACE(?templateMotifCigarP45527MF_0223239, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP4552740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) . BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0223242) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45527MF_0223239, 1, (STRLEN(?templateMotifCigarP45527MF_0223239) - STRLEN(REPLACE(?templateMotifCigarP45527MF_0223239, CONCAT('^(?:-*[^-]){', STR(((193 - ?templateMotifSequenceMatchBeginPositionP4552740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) . BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0223242) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45527MF_0223239, 1, (STRLEN(?templateMotifCigarP45527MF_0223239) - STRLEN(REPLACE(?templateMotifCigarP45527MF_0223239, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP4552740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) . BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0223242) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag63) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag63, ?UNBOUND_VARIABLE) AS ?case13) . } """ . .