@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:771604 up:source unirule:MF_02233 . _:771605 up:source unirule:MF_02233 . _:771606 up:source unirule:MF_02233 . _:771607 up:source unirule:MF_02233 . _:771608 up:source unirule:MF_02233 . _:771609 up:source unirule:MF_02233 . _:771610 up:source unirule:MF_02233 . _:771611 up:source unirule:MF_02233 . _:771612 up:source unirule:MF_02233 . _:771613 up:source unirule:MF_02233 . _:771614 up:source unirule:MF_02233 . _:771615 up:source unirule:MF_02233 . _:771616 up:source unirule:MF_02233 . _:771617 up:source unirule:MF_02233 . _:771618 up:source unirule:MF_02233 . _:771619 up:source unirule:MF_02233 . _:771620 up:source unirule:MF_02233 . _:771621 up:source unirule:MF_02233 . _:771622 up:source unirule:MF_02233 . _:771623 up:source unirule:MF_02233 . _:771624 up:source unirule:MF_02233 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation8 , ?annotation10 , ?annotation11 , ?annotation12 ; up:classifiedWith GO:0006744 , keyword:831 ; up:recommendedName ?name0 . ?name0 up:ecName '1.97.1.15' ; up:fullName 'Ubiquinone biosynthesis hydroxylase UbiV' ; rdf:type up:Structured_Name . ?name1 up:fullName '2-(all-trans-polyprenyl)phenol 6-hydroxylase subunit UbiV' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'ubiV' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Component of the UbiUV hydroxylase, which is involved in the oxygen-independent ubiquinone (coenzyme Q) biosynthesis. It catalyzes the three hydroxylation steps, using prephenate as the oxygen donor.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity ; up:enzymeClass . ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity ; up:enzymeClass . ?annotation8 up:activity ?activity9 ; rdf:type up:Catalytic_Activity_Annotation . ?activity9 up:catalyticActivity ; up:enzymeClass . ?annotation10 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; ubiquinone biosynthesis.' . ?annotation11 a up:Subunit_Annotation ; rdfs:comment 'Forms a heterodimer with UbiU.' . ?annotation12 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the peptidase U32 family. UbiV subfamily.' . ?case13 up:classifiedWith GO:0051539 , keyword:408 , keyword:411 , keyword:479 , keyword:4 . ?pfs14 up:annotation ?annotation15 , ?annotation21 , ?annotation27 , ?annotation33 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:49883 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:49883 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:49883 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:49883 . _:771625 a rdf:Statement ; up:attribution _:771604 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:771626 a rdf:Statement ; up:attribution _:771605 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:771627 a rdf:Statement ; up:attribution _:771606 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:771628 a rdf:Statement ; up:attribution _:771607 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:771629 a rdf:Statement ; up:attribution _:771608 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:771630 a rdf:Statement ; up:attribution _:771609 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:771631 a rdf:Statement ; up:attribution _:771610 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:771632 a rdf:Statement ; up:attribution _:771611 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:771633 a rdf:Statement ; up:attribution _:771612 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:771634 a rdf:Statement ; up:attribution _:771613 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:771635 a rdf:Statement ; up:attribution _:771614 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:831 . _:771636 a rdf:Statement ; up:attribution _:771615 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006744 . _:771637 a rdf:Statement ; up:attribution _:771616 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:4 . _:771638 a rdf:Statement ; up:attribution _:771617 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:771639 a rdf:Statement ; up:attribution _:771618 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:771640 a rdf:Statement ; up:attribution _:771619 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:771641 a rdf:Statement ; up:attribution _:771620 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object GO:0051539 . _:771642 a rdf:Statement ; up:source unirule:MF_02233 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:771643 a rdf:Statement ; up:attribution _:771621 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:771644 a rdf:Statement ; up:source unirule:MF_02233 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:771645 a rdf:Statement ; up:attribution _:771622 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:771646 a rdf:Statement ; up:source unirule:MF_02233 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:771647 a rdf:Statement ; up:attribution _:771623 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:771648 a rdf:Statement ; up:source unirule:MF_02233 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:771649 a rdf:Statement ; up:attribution _:771624 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02233 #Rule MF_02233 Created by:? on:2019-10-01 Modified by:Catherine Rivoire on:2025-04-08 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02233 . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(URI(CONCAT(STR(?this), '#MF_02233a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02233a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02233a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02233a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02233a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_02233a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_02233a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_02233a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_02233a12')) AS ?annotation12) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionP4547544 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4547546 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP45475MF_0223339 . ?templateMotifSequenceMatchRegionP4547544 faldo:begin ?templateMotifSequenceMatchBeginP4547545 . ?templateMotifSequenceMatchBeginP4547545 faldo:position ?templateMotifSequenceMatchBeginPositionP4547540 ; faldo:reference isoform:P45475-1 . ?templateMotifSequenceProfileAlignmentOperationP4547546 edam:has_input signature:MF_02233 ; rdf:type edam:operation_0300 . ?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223350 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP45475MF_0223341 . ?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223349 . ?targetMotifMatchRegionMatchBeginMF_0223349 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223342 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0223350 edam:has_input signature:MF_02233 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45475MF_0223339, 1, (STRLEN(?templateMotifCigarP45475MF_0223339) - STRLEN(REPLACE(?templateMotifCigarP45475MF_0223339, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP4547540) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45475MF_0223341, 1, (STRLEN(?targetMotifMatchCigarP45475MF_0223341) - STRLEN(REPLACE(?targetMotifMatchCigarP45475MF_0223341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45475MF_0223341, 1, (STRLEN(?targetMotifMatchCigarP45475MF_0223341) - STRLEN(REPLACE(?targetMotifMatchCigarP45475MF_0223341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) . BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0223342) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45475MF_0223339, 1, (STRLEN(?templateMotifCigarP45475MF_0223339) - STRLEN(REPLACE(?templateMotifCigarP45475MF_0223339, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP4547540) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45475MF_0223341, 1, (STRLEN(?targetMotifMatchCigarP45475MF_0223341) - STRLEN(REPLACE(?targetMotifMatchCigarP45475MF_0223341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45475MF_0223341, 1, (STRLEN(?targetMotifMatchCigarP45475MF_0223341) - STRLEN(REPLACE(?targetMotifMatchCigarP45475MF_0223341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) . BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0223342) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45475MF_0223339, 1, (STRLEN(?templateMotifCigarP45475MF_0223339) - STRLEN(REPLACE(?templateMotifCigarP45475MF_0223339, CONCAT('^(?:-*[^-]){', STR(((193 - ?templateMotifSequenceMatchBeginPositionP4547540) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45475MF_0223341, 1, (STRLEN(?targetMotifMatchCigarP45475MF_0223341) - STRLEN(REPLACE(?targetMotifMatchCigarP45475MF_0223341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45475MF_0223341, 1, (STRLEN(?targetMotifMatchCigarP45475MF_0223341) - STRLEN(REPLACE(?targetMotifMatchCigarP45475MF_0223341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) . BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0223342) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45475MF_0223339, 1, (STRLEN(?templateMotifCigarP45475MF_0223339) - STRLEN(REPLACE(?templateMotifCigarP45475MF_0223339, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP4547540) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45475MF_0223341, 1, (STRLEN(?targetMotifMatchCigarP45475MF_0223341) - STRLEN(REPLACE(?targetMotifMatchCigarP45475MF_0223341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45475MF_0223341, 1, (STRLEN(?targetMotifMatchCigarP45475MF_0223341) - STRLEN(REPLACE(?targetMotifMatchCigarP45475MF_0223341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) . BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0223342) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag63) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag63, ?UNBOUND_VARIABLE) AS ?case13) . } """ . .