CONSTRUCT { _:770877 up:source unirule:MF_03001 . _:770878 up:source unirule:MF_03001 . _:770879 up:source unirule:MF_03001 . _:770880 up:source unirule:MF_03001 . _:770881 up:source unirule:MF_03001 . _:770882 up:source unirule:MF_03001 . _:770883 up:source unirule:MF_03001 . _:770884 up:source unirule:MF_03001 . _:770885 up:source unirule:MF_03001 . _:770886 up:source unirule:MF_03001 . _:770887 up:source unirule:MF_03001 . _:770888 up:source unirule:MF_03001 . _:770889 up:source unirule:MF_03001 . _:770890 up:source unirule:MF_03001 . _:770891 up:source unirule:MF_03001 . _:770892 up:source unirule:MF_03001 . _:770893 up:source unirule:MF_03001 . _:770894 up:source unirule:MF_03001 . _:770895 up:source unirule:MF_03001 . _:770896 up:source unirule:MF_03001 . _:770897 up:source unirule:MF_03001 . _:770898 up:source unirule:MF_03001 . _:770899 up:source unirule:MF_03001 . _:770900 up:source unirule:MF_03001 . _:770901 up:source unirule:MF_03001 . _:770902 up:source unirule:MF_03001 . _:770903 up:source unirule:MF_03001 . _:770904 up:source unirule:MF_03001 . ?this up:annotation ?annotation0 , ?annotation2 ; up:classifiedWith GO:0001732 , GO:0002183 , GO:0003723 , GO:0003743 , GO:0005737 , GO:0005852 , GO:0016282 , GO:0033290 , keyword:396 , keyword:648 , keyword:694 , keyword:963 . ?annotation0 a up:Subcellular_Location_Annotation . ?annotation0li1 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the eIF-3 subunit B family.' . ?case3 up:classifiedWith keyword:7 . ?case5 up:classifiedWith keyword:597 . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N-acetylmethionine' . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Region_Annotation ; rdfs:comment 'Sufficient for interaction with HCR1 and TIF32' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Region_Annotation ; rdfs:comment 'Sufficient for interaction with PIC8' . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Region_Annotation ; rdfs:comment 'Sufficient for interaction with EIF3E' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; rdf:type up:Region_Annotation ; rdfs:comment 'Sufficient for interaction with EIF3J' . ?pfsb40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine' . ?pfsb46 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine' . ?pfsb52 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfs56 up:annotation ?annotation57 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine' . ?pfsb58 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine' . ?pfsb64 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine' . ?pfsb70 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine' . ?pfsb76 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine' . ?pfsb82 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . _:770905 a rdf:Statement ; up:attribution _:770877 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:770906 a rdf:Statement ; up:attribution _:770878 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:770907 a rdf:Statement ; up:attribution _:770879 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:770908 a rdf:Statement ; up:attribution _:770880 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:396 . _:770909 a rdf:Statement ; up:attribution _:770881 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:648 . _:770910 a rdf:Statement ; up:attribution _:770882 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:770911 a rdf:Statement ; up:attribution _:770883 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003723 . _:770912 a rdf:Statement ; up:attribution _:770884 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003743 . _:770913 a rdf:Statement ; up:attribution _:770885 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0001732 . _:770914 a rdf:Statement ; up:attribution _:770886 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002183 . _:770915 a rdf:Statement ; up:attribution _:770887 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:770916 a rdf:Statement ; up:attribution _:770888 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005852 . _:770917 a rdf:Statement ; up:attribution _:770889 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016282 . _:770918 a rdf:Statement ; up:attribution _:770890 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0033290 . _:770919 a rdf:Statement ; up:attribution _:770891 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:7 . _:770920 a rdf:Statement ; up:attribution _:770892 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:770921 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:770922 a rdf:Statement ; up:attribution _:770893 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:770923 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:770924 a rdf:Statement ; up:attribution _:770894 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:770925 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:770926 a rdf:Statement ; up:attribution _:770895 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:770927 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:770928 a rdf:Statement ; up:attribution _:770896 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:770929 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:770930 a rdf:Statement ; up:attribution _:770897 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:770931 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:770932 a rdf:Statement ; up:attribution _:770898 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:770933 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:770934 a rdf:Statement ; up:attribution _:770899 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:770935 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:770936 a rdf:Statement ; up:attribution _:770900 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:770937 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:770938 a rdf:Statement ; up:attribution _:770901 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:770939 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:770940 a rdf:Statement ; up:attribution _:770902 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:770941 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:770942 a rdf:Statement ; up:attribution _:770903 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:770943 a rdf:Statement ; up:source unirule:MF_03001 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:770944 a rdf:Statement ; up:attribution _:770904 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03001 #Rule MF_03001 Created by:bridge on:2009-01-29 Modified by:ipedruzz on:2021-03-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03001 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03001a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03001a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP5588491 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5588493 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55884MF_0300186 . ?templateMotifSequenceMatchRegionP5588491 faldo:begin ?templateMotifSequenceMatchBeginP5588492 . ?templateMotifSequenceMatchBeginP5588492 faldo:position ?templateMotifSequenceMatchBeginPositionP5588487 ; faldo:reference isoform:P55884-1 . ?templateMotifSequenceProfileAlignmentOperationP5588493 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300197 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55884MF_0300188 . ?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300196 . ?targetMotifMatchRegionMatchBeginMF_0300196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300189 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0300197 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacetyl) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_0300186, 1, (STRLEN(?templateMotifCigarP55884MF_0300186) - STRLEN(REPLACE(?templateMotifCigarP55884MF_0300186, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP5588487) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_0300188, 1, (STRLEN(?targetMotifMatchCigarP55884MF_0300188) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_0300188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_0300188, 1, (STRLEN(?targetMotifMatchCigarP55884MF_0300188) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_0300188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) . BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0300189) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'M')) . BIND(URI(CONCAT(STR(?this), '#MF_03001a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP06103106 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06103108 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06103MF_03001101 . ?templateMotifSequenceMatchRegionP06103106 faldo:begin ?templateMotifSequenceMatchBeginP06103107 . ?templateMotifSequenceMatchBeginP06103107 faldo:position ?templateMotifSequenceMatchBeginPositionP06103102 ; faldo:reference isoform:P06103-1 . ?templateMotifSequenceProfileAlignmentOperationP06103108 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001112 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06103MF_03001103 . ?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001111 . ?targetMotifMatchRegionMatchBeginMF_03001111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001104 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001112 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4891 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06103MF_03001101, 1, (STRLEN(?templateMotifCigarP06103MF_03001101) - STRLEN(REPLACE(?templateMotifCigarP06103MF_03001101, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP06103102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06103MF_03001103, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001103) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06103MF_03001103, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001103) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_03001104) - 1) AS ?thisPositionOn24) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06103MF_03001101, 1, (STRLEN(?templateMotifCigarP06103MF_03001101) - STRLEN(REPLACE(?templateMotifCigarP06103MF_03001101, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP06103102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06103MF_03001103, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001103) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06103MF_03001103, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001103) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) . BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_03001104) - 1) AS ?thisPositionOn25) . BIND(?this AS ?pfs2t117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) . BIND(URI(CONCAT(STR(?this), '#MF_03001a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP06103123 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06103125 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06103MF_03001118 . ?templateMotifSequenceMatchRegionP06103123 faldo:begin ?templateMotifSequenceMatchBeginP06103124 . ?templateMotifSequenceMatchBeginP06103124 faldo:position ?templateMotifSequenceMatchBeginPositionP06103119 ; faldo:reference isoform:P06103-1 . ?templateMotifSequenceProfileAlignmentOperationP06103125 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001129 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06103MF_03001120 . ?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001128 . ?targetMotifMatchRegionMatchBeginMF_03001128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001121 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001129 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4891 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06103MF_03001118, 1, (STRLEN(?templateMotifCigarP06103MF_03001118) - STRLEN(REPLACE(?templateMotifCigarP06103MF_03001118, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP06103119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06103MF_03001120, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001120) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06103MF_03001120, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001120) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_03001121) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06103MF_03001118, 1, (STRLEN(?templateMotifCigarP06103MF_03001118) - STRLEN(REPLACE(?templateMotifCigarP06103MF_03001118, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP06103119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06103MF_03001120, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001120) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06103MF_03001120, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001120) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_03001121) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs2t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) . BIND(URI(CONCAT(STR(?this), '#MF_03001a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP55884140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55884MF_03001135 . ?templateMotifSequenceMatchRegionP55884140 faldo:begin ?templateMotifSequenceMatchBeginP55884141 . ?templateMotifSequenceMatchBeginP55884141 faldo:position ?templateMotifSequenceMatchBeginPositionP55884136 ; faldo:reference isoform:P55884-1 . ?templateMotifSequenceProfileAlignmentOperationP55884142 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55884MF_03001137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001145 . ?targetMotifMatchRegionMatchBeginMF_03001145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001146 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001135, 1, (STRLEN(?templateMotifCigarP55884MF_03001135) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001135, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP55884136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001137, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001137) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001137, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001137) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_03001138) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001135, 1, (STRLEN(?templateMotifCigarP55884MF_03001135) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001135, CONCAT('^(?:-*[^-]){', STR(((413 - ?templateMotifSequenceMatchBeginPositionP55884136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001137, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001137) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001137, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001137) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_03001138) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs3t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) . BIND(URI(CONCAT(STR(?this), '#MF_03001a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP55884157 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884159 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55884MF_03001152 . ?templateMotifSequenceMatchRegionP55884157 faldo:begin ?templateMotifSequenceMatchBeginP55884158 . ?templateMotifSequenceMatchBeginP55884158 faldo:position ?templateMotifSequenceMatchBeginPositionP55884153 ; faldo:reference isoform:P55884-1 . ?templateMotifSequenceProfileAlignmentOperationP55884159 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001163 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55884MF_03001154 . ?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001162 . ?targetMotifMatchRegionMatchBeginMF_03001162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001155 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001163 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001152, 1, (STRLEN(?templateMotifCigarP55884MF_03001152) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001152, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP55884153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001154, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001154) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001154, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001154) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) . BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_03001155) - 1) AS ?thisPositionOn42) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001152, 1, (STRLEN(?templateMotifCigarP55884MF_03001152) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001152, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP55884153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001154, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001154) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001154, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001154) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) . BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_03001155) - 1) AS ?thisPositionOn43) . BIND(?this AS ?pfs3t168) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) . FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) . BIND(URI(CONCAT(STR(?this), '#MF_03001a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP55884174 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884176 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55884MF_03001169 . ?templateMotifSequenceMatchRegionP55884174 faldo:begin ?templateMotifSequenceMatchBeginP55884175 . ?templateMotifSequenceMatchBeginP55884175 faldo:position ?templateMotifSequenceMatchBeginPositionP55884170 ; faldo:reference isoform:P55884-1 . ?templateMotifSequenceProfileAlignmentOperationP55884176 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001180 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55884MF_03001171 . ?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001179 . ?targetMotifMatchRegionMatchBeginMF_03001179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001172 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001180 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001169, 1, (STRLEN(?templateMotifCigarP55884MF_03001169) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001169, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP55884170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001171, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001171) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001171, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001171) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) . BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_03001172) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs3t183) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03001a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP55884189 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884191 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55884MF_03001184 . ?templateMotifSequenceMatchRegionP55884189 faldo:begin ?templateMotifSequenceMatchBeginP55884190 . ?templateMotifSequenceMatchBeginP55884190 faldo:position ?templateMotifSequenceMatchBeginPositionP55884185 ; faldo:reference isoform:P55884-1 . ?templateMotifSequenceProfileAlignmentOperationP55884191 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001195 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55884MF_03001186 . ?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001194 . ?targetMotifMatchRegionMatchBeginMF_03001194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001187 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001195 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001184, 1, (STRLEN(?templateMotifCigarP55884MF_03001184) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001184, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP55884185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001186, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001186) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001186, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001186) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) . BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_03001187) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs3t198) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03001a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP55884204 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884206 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55884MF_03001199 . ?templateMotifSequenceMatchRegionP55884204 faldo:begin ?templateMotifSequenceMatchBeginP55884205 . ?templateMotifSequenceMatchBeginP55884205 faldo:position ?templateMotifSequenceMatchBeginPositionP55884200 ; faldo:reference isoform:P55884-1 . ?templateMotifSequenceProfileAlignmentOperationP55884206 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001210 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55884MF_03001201 . ?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001209 . ?targetMotifMatchRegionMatchBeginMF_03001209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001202 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001210 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001199, 1, (STRLEN(?templateMotifCigarP55884MF_03001199) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001199, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP55884200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001201, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001201) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001201, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001201) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) . BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_03001202) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs3t213) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03001a57')) AS ?annotation57) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP55884219 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884221 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55884MF_03001214 . ?templateMotifSequenceMatchRegionP55884219 faldo:begin ?templateMotifSequenceMatchBeginP55884220 . ?templateMotifSequenceMatchBeginP55884220 faldo:position ?templateMotifSequenceMatchBeginPositionP55884215 ; faldo:reference isoform:P55884-1 . ?templateMotifSequenceProfileAlignmentOperationP55884221 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001225 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55884MF_03001216 . ?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001224 . ?targetMotifMatchRegionMatchBeginMF_03001224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001217 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001225 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001214, 1, (STRLEN(?templateMotifCigarP55884MF_03001214) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001214, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP55884215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001216, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001216) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001216, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001216) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) . BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_03001217) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs3t228) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03001a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP55884234 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884236 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55884MF_03001229 . ?templateMotifSequenceMatchRegionP55884234 faldo:begin ?templateMotifSequenceMatchBeginP55884235 . ?templateMotifSequenceMatchBeginP55884235 faldo:position ?templateMotifSequenceMatchBeginPositionP55884230 ; faldo:reference isoform:P55884-1 . ?templateMotifSequenceProfileAlignmentOperationP55884236 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001240 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55884MF_03001231 . ?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001239 . ?targetMotifMatchRegionMatchBeginMF_03001239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001232 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001240 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001229, 1, (STRLEN(?templateMotifCigarP55884MF_03001229) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001229, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP55884230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001231, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001231) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001231, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001231) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) . BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_03001232) - 1) AS ?thisPositionOn72) . BIND(?thisPositionOn72 AS ?thisPositionOn73) . BIND(?this AS ?pfs3t243) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03001a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP55884249 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884251 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55884MF_03001244 . ?templateMotifSequenceMatchRegionP55884249 faldo:begin ?templateMotifSequenceMatchBeginP55884250 . ?templateMotifSequenceMatchBeginP55884250 faldo:position ?templateMotifSequenceMatchBeginPositionP55884245 ; faldo:reference isoform:P55884-1 . ?templateMotifSequenceProfileAlignmentOperationP55884251 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001255 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55884MF_03001246 . ?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001254 . ?targetMotifMatchRegionMatchBeginMF_03001254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001247 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001255 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001244, 1, (STRLEN(?templateMotifCigarP55884MF_03001244) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001244, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP55884245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001246, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001246) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001246, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001246) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) . BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_03001247) - 1) AS ?thisPositionOn78) . BIND(?thisPositionOn78 AS ?thisPositionOn79) . BIND(?this AS ?pfs3t258) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03001a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP55884264 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884266 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55884MF_03001259 . ?templateMotifSequenceMatchRegionP55884264 faldo:begin ?templateMotifSequenceMatchBeginP55884265 . ?templateMotifSequenceMatchBeginP55884265 faldo:position ?templateMotifSequenceMatchBeginPositionP55884260 ; faldo:reference isoform:P55884-1 . ?templateMotifSequenceProfileAlignmentOperationP55884266 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001270 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55884MF_03001261 . ?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001269 . ?targetMotifMatchRegionMatchBeginMF_03001269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001262 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03001270 edam:has_input signature:MF_03001 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001259, 1, (STRLEN(?templateMotifCigarP55884MF_03001259) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001259, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP55884260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001261, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001261) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001261, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001261) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) . BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_03001262) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs3t273) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03001a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag274) . } BIND(IF(BOUND(?tagacetyl), ?caseWithTag274, ?UNBOUND_VARIABLE) AS ?case3) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?case5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7214 . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:6237 . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:40674 . })) . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:40674 . })) . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon275 {taxon:7214 taxon:7742} ?thisOrganism rdfs:subClassOf+ ?supertaxon275 . })) . BIND(?this AS ?case12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon276 {taxon:33090 taxon:4751 taxon:7742} ?thisOrganism rdfs:subClassOf+ ?supertaxon276 . })) . BIND(?this AS ?case13) . } }