CONSTRUCT { _:777740 up:source unirule:MF_03016 . _:777741 up:source unirule:MF_03016 . _:777742 up:source unirule:MF_03016 . _:777743 up:source unirule:MF_03016 . _:777744 up:source unirule:MF_03016 . _:777745 up:source unirule:MF_03016 . _:777746 up:source unirule:MF_03016 . _:777747 up:source unirule:MF_03016 . _:777748 up:source unirule:MF_03016 . _:777749 up:source unirule:MF_03016 . _:777750 up:source unirule:MF_03016 . _:777751 up:source unirule:MF_03016 . _:777752 up:source unirule:MF_03016 . _:777753 up:source unirule:MF_03016 . _:777754 up:source unirule:MF_03016 . _:777755 up:source unirule:MF_03016 . _:777756 up:source unirule:MF_03016 . _:777757 up:source unirule:MF_03016 . _:777758 up:source unirule:MF_03016 . _:777759 up:source unirule:MF_03016 . _:777760 up:source unirule:MF_03016 . _:777761 up:source unirule:MF_03016 . _:777762 up:source unirule:MF_03016 . _:777763 up:source unirule:MF_03016 . _:777764 up:source unirule:MF_03016 . _:777765 up:source unirule:MF_03016 . _:777766 up:source unirule:MF_03016 . _:777767 up:source unirule:MF_03016 . _:777768 up:source unirule:MF_03016 . _:777769 up:source unirule:MF_03016 . _:777770 up:source unirule:MF_03016 . _:777771 up:source unirule:MF_03016 . _:777772 up:source unirule:MF_03016 . _:777773 up:source unirule:MF_03016 . _:777774 up:source unirule:MF_03016 . _:777775 up:source unirule:MF_03016 . _:777776 up:source unirule:MF_03016 . _:777777 up:source unirule:MF_03016 . _:777778 up:source unirule:MF_03016 . _:777779 up:source unirule:MF_03016 . ?this up:alternativeName ?name1 , ?name2 , ?name3 , ?name4 , ?name5 ; up:annotation ?annotation7 , ?annotation8 , ?annotation9 , ?annotation10 ; up:classifiedWith GO:0000028 , GO:0003735 , GO:0005055 , GO:0006412 , GO:0007155 , GO:0022627 , GO:0043236 , keyword:1003 , keyword:472 , keyword:539 , keyword:675 , keyword:687 , keyword:689 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:fullName 'Small ribosomal subunit protein uS2' ; rdf:type up:Structured_Name . ?name1 up:fullName '37 kDa laminin receptor precursor' ; up:shortName '37LRP' ; rdf:type up:Structured_Name . ?name2 up:fullName '37/67 kDa laminin receptor' ; up:shortName 'LRP/LR' ; rdf:type up:Structured_Name . ?name3 up:fullName '67 kDa laminin receptor' ; up:shortName '67LR' ; rdf:type up:Structured_Name . ?name4 up:fullName 'Laminin receptor 1' ; up:shortName 'LamR' ; rdf:type up:Structured_Name . ?name5 up:fullName 'Laminin-binding protein precursor p40' ; up:shortName 'LBP/p40' ; rdf:type up:Structured_Name . ?gene6 skos:prefLabel 'RPSA' . ?annotation7 a up:PTM_Annotation ; rdfs:comment 'Acylated. Acylation may be a prerequisite for conversion of the monomeric 37 kDa laminin receptor precursor (37LRP) to the mature dimeric 67 kDa laminin receptor (67LR), and may provide a mechanism for membrane association.' . ?annotation8 a up:PTM_Annotation ; rdfs:comment 'Cleaved by stromelysin-3 (ST3) at the cell surface. Cleavage by stromelysin-3 may be a mechanism to alter cell-extracellular matrix interactions.' . ?annotation9 a up:Annotation ; rdfs:comment 'This protein appears to have acquired a second function as a laminin receptor specifically in the vertebrate lineage.' . ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the universal ribosomal protein uS2 family.' . ?case11 up:classifiedWith keyword:7 . ?case12 up:classifiedWith keyword:677 . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N-acetylserine' . ?pfsb17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfs21 up:annotation ?annotation22 , ?annotation27 , ?annotation32 , ?annotation37 , ?annotation42 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; rdf:type up:Repeat_Annotation ; rdfs:comment '[DE]-W-[ST] 1' . ?pfsb23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Repeat_Annotation ; rdfs:comment '[DE]-W-[ST] 2' . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; rdf:type up:Repeat_Annotation ; rdfs:comment '[DE]-W-[ST] 3' . ?pfsb33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; rdf:type up:Repeat_Annotation ; rdfs:comment '[DE]-W-[ST] 4' . ?pfsb38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; rdf:type up:Repeat_Annotation ; rdfs:comment '[DE]-W-[ST] 5' . ?pfsb43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by ST3; site 1' . ?pfsb49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by ST3; site 2' . ?pfsb55 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; rdf:type up:Region_Annotation ; rdfs:comment 'Laminin-binding' . ?pfsb61 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; rdf:type up:Region_Annotation ; rdfs:comment 'Laminin-binding' . ?pfsb67 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; rdf:type up:Region_Annotation ; rdfs:comment 'Laminin-binding' . ?pfsb73 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfs77 up:annotation ?annotation78 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; rdf:type up:Initiator_Methionine_Annotation ; rdfs:comment 'Removed' . ?pfsb79 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfs83 up:annotation ?annotation84 . ?annotation84 faldo:begin ?pfsb85 ; faldo:end ?pfse86 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with PPP1R16B' . ?pfsb85 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfse86 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . _:777780 a rdf:Statement ; up:attribution _:777740 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:777781 a rdf:Statement ; up:attribution _:777741 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:777782 a rdf:Statement ; up:attribution _:777742 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:777783 a rdf:Statement ; up:attribution _:777743 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:777784 a rdf:Statement ; up:attribution _:777744 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name4 . _:777785 a rdf:Statement ; up:attribution _:777745 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name5 . _:777786 a rdf:Statement ; up:attribution _:777746 ; rdf:subject ?gene6 ; rdf:predicate up:encodedBy ; rdf:object ?gene6 . _:777787 a rdf:Statement ; up:attribution _:777747 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:777788 a rdf:Statement ; up:attribution _:777748 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:777789 a rdf:Statement ; up:attribution _:777749 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:777790 a rdf:Statement ; up:attribution _:777750 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:777791 a rdf:Statement ; up:attribution _:777751 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:777792 a rdf:Statement ; up:attribution _:777752 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:777793 a rdf:Statement ; up:attribution _:777753 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:675 . _:777794 a rdf:Statement ; up:attribution _:777754 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:777795 a rdf:Statement ; up:attribution _:777755 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:777796 a rdf:Statement ; up:attribution _:777756 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:687 . _:777797 a rdf:Statement ; up:attribution _:777757 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:689 . _:777798 a rdf:Statement ; up:attribution _:777758 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0043236 . _:777799 a rdf:Statement ; up:attribution _:777759 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005055 . _:777800 a rdf:Statement ; up:attribution _:777760 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0007155 . _:777801 a rdf:Statement ; up:attribution _:777761 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0022627 . _:777802 a rdf:Statement ; up:attribution _:777762 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003735 . _:777803 a rdf:Statement ; up:attribution _:777763 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000028 . _:777804 a rdf:Statement ; up:attribution _:777764 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006412 . _:777805 a rdf:Statement ; up:attribution _:777765 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:7 . _:777806 a rdf:Statement ; up:attribution _:777766 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object keyword:677 . _:777807 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:777808 a rdf:Statement ; up:attribution _:777767 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:777809 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:777810 a rdf:Statement ; up:attribution _:777768 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:777811 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:777812 a rdf:Statement ; up:attribution _:777769 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:777813 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:777814 a rdf:Statement ; up:attribution _:777770 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:777815 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:777816 a rdf:Statement ; up:attribution _:777771 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:777817 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:777818 a rdf:Statement ; up:attribution _:777772 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:777819 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:777820 a rdf:Statement ; up:attribution _:777773 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:777821 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:777822 a rdf:Statement ; up:attribution _:777774 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:777823 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:777824 a rdf:Statement ; up:attribution _:777775 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:777825 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:777826 a rdf:Statement ; up:attribution _:777776 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:777827 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:777828 a rdf:Statement ; up:attribution _:777777 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:777829 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:777830 a rdf:Statement ; up:attribution _:777778 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:777831 a rdf:Statement ; up:source unirule:MF_03016 ; rdf:subject ?pfs83 ; rdf:predicate up:annotation ; rdf:object ?annotation84 . _:777832 a rdf:Statement ; up:attribution _:777779 ; rdf:subject ?pfs83 ; rdf:predicate up:annotation ; rdf:object ?annotation84 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03016 #Rule MF_03016 Created by:pedruzzi on:2009-10-26 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03016 . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(URI(CONCAT(STR(?this), '#MF_03016a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_03016a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_03016a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_03016a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_03016a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_03016a5')) AS ?name5) . BIND(URI(CONCAT(STR(?this), '#MF_03016a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_03016a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_03016a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_03016a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionP0886594 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0886596 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08865MF_0301689 . ?templateMotifSequenceMatchRegionP0886594 faldo:begin ?templateMotifSequenceMatchBeginP0886595 . ?templateMotifSequenceMatchBeginP0886595 faldo:position ?templateMotifSequenceMatchBeginPositionP0886590 ; faldo:reference isoform:P08865-1 . ?templateMotifSequenceProfileAlignmentOperationP0886596 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . ?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03016100 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08865MF_0301691 . ?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0301699 . ?targetMotifMatchRegionMatchBeginMF_0301699 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0301692 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03016100 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacetyl) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_0301689, 1, (STRLEN(?templateMotifCigarP08865MF_0301689) - STRLEN(REPLACE(?templateMotifCigarP08865MF_0301689, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP0886590) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_0301691, 1, (STRLEN(?targetMotifMatchCigarP08865MF_0301691) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_0301691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_0301691, 1, (STRLEN(?targetMotifMatchCigarP08865MF_0301691) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_0301691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) . BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0301692) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03016a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionP08865109 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08865111 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08865MF_03016104 . ?templateMotifSequenceMatchRegionP08865109 faldo:begin ?templateMotifSequenceMatchBeginP08865110 . ?templateMotifSequenceMatchBeginP08865110 faldo:position ?templateMotifSequenceMatchBeginPositionP08865105 ; faldo:reference isoform:P08865-1 . ?templateMotifSequenceProfileAlignmentOperationP08865111 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . ?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03016115 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08865MF_03016106 . ?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03016114 . ?targetMotifMatchRegionMatchBeginMF_03016114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03016107 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03016115 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016104, 1, (STRLEN(?templateMotifCigarP08865MF_03016104) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016104, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionP08865105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_03016107) - 1) AS ?thisPositionOn25) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016104, 1, (STRLEN(?templateMotifCigarP08865MF_03016104) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016104, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP08865105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) . BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_03016107) - 1) AS ?thisPositionOn26) . BIND(?this AS ?pfs2t120) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) . FILTER (REGEX('[DE]W[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016104, 1, (STRLEN(?templateMotifCigarP08865MF_03016104) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016104, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP08865105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_03016107) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016104, 1, (STRLEN(?templateMotifCigarP08865MF_03016104) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016104, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP08865105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) . BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_03016107) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs2t125) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER (REGEX('[DE]W[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016104, 1, (STRLEN(?templateMotifCigarP08865MF_03016104) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016104, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionP08865105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) . BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_03016107) - 1) AS ?thisPositionOn35) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016104, 1, (STRLEN(?templateMotifCigarP08865MF_03016104) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016104, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP08865105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) . BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_03016107) - 1) AS ?thisPositionOn36) . BIND(?this AS ?pfs2t130) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) . FILTER (REGEX('[DE]W[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016104, 1, (STRLEN(?templateMotifCigarP08865MF_03016104) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016104, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP08865105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_03016107) - 1) AS ?thisPositionOn40) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016104, 1, (STRLEN(?templateMotifCigarP08865MF_03016104) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016104, CONCAT('^(?:-*[^-]){', STR(((277 - ?templateMotifSequenceMatchBeginPositionP08865105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) . BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_03016107) - 1) AS ?thisPositionOn41) . BIND(?this AS ?pfs2t135) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) . FILTER (REGEX('[DE]W[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016104, 1, (STRLEN(?templateMotifCigarP08865MF_03016104) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016104, CONCAT('^(?:-*[^-]){', STR(((293 - ?templateMotifSequenceMatchBeginPositionP08865105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) . BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_03016107) - 1) AS ?thisPositionOn45) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016104, 1, (STRLEN(?templateMotifCigarP08865MF_03016104) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016104, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionP08865105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016106, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016106) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) . BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_03016107) - 1) AS ?thisPositionOn46) . BIND(?this AS ?pfs2t140) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) . FILTER (REGEX('[DE]W[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn45, (?thisPositionOn46 - ?thisPositionOn45)))) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionQ3ZM03146 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ3ZM03148 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ3ZM03MF_03016141 . ?templateMotifSequenceMatchRegionQ3ZM03146 faldo:begin ?templateMotifSequenceMatchBeginQ3ZM03147 . ?templateMotifSequenceMatchBeginQ3ZM03147 faldo:position ?templateMotifSequenceMatchBeginPositionQ3ZM03142 ; faldo:reference isoform:Q3ZM03-1 . ?templateMotifSequenceProfileAlignmentOperationQ3ZM03148 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . ?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03016152 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ3ZM03MF_03016143 . ?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03016151 . ?targetMotifMatchRegionMatchBeginMF_03016151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03016144 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03016152 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ3ZM03MF_03016141, 1, (STRLEN(?templateMotifCigarQ3ZM03MF_03016141) - STRLEN(REPLACE(?templateMotifCigarQ3ZM03MF_03016141, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionQ3ZM03142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ3ZM03MF_03016143, 1, (STRLEN(?targetMotifMatchCigarQ3ZM03MF_03016143) - STRLEN(REPLACE(?targetMotifMatchCigarQ3ZM03MF_03016143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ3ZM03MF_03016143, 1, (STRLEN(?targetMotifMatchCigarQ3ZM03MF_03016143) - STRLEN(REPLACE(?targetMotifMatchCigarQ3ZM03MF_03016143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) . BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_03016144) - 1) AS ?thisPositionOn51) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ3ZM03MF_03016141, 1, (STRLEN(?templateMotifCigarQ3ZM03MF_03016141) - STRLEN(REPLACE(?templateMotifCigarQ3ZM03MF_03016141, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionQ3ZM03142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ3ZM03MF_03016143, 1, (STRLEN(?targetMotifMatchCigarQ3ZM03MF_03016143) - STRLEN(REPLACE(?targetMotifMatchCigarQ3ZM03MF_03016143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ3ZM03MF_03016143, 1, (STRLEN(?targetMotifMatchCigarQ3ZM03MF_03016143) - STRLEN(REPLACE(?targetMotifMatchCigarQ3ZM03MF_03016143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_03016144) - 1) AS ?thisPositionOn52) . BIND(?this AS ?pfs3t157) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, (?thisPositionOn52 - ?thisPositionOn51)) = 'AF')) . BIND(URI(CONCAT(STR(?this), '#MF_03016a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionQ3ZM03163 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ3ZM03165 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ3ZM03MF_03016158 . ?templateMotifSequenceMatchRegionQ3ZM03163 faldo:begin ?templateMotifSequenceMatchBeginQ3ZM03164 . ?templateMotifSequenceMatchBeginQ3ZM03164 faldo:position ?templateMotifSequenceMatchBeginPositionQ3ZM03159 ; faldo:reference isoform:Q3ZM03-1 . ?templateMotifSequenceProfileAlignmentOperationQ3ZM03165 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . ?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03016169 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ3ZM03MF_03016160 . ?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03016168 . ?targetMotifMatchRegionMatchBeginMF_03016168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03016161 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03016169 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ3ZM03MF_03016158, 1, (STRLEN(?templateMotifCigarQ3ZM03MF_03016158) - STRLEN(REPLACE(?templateMotifCigarQ3ZM03MF_03016158, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionQ3ZM03159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ3ZM03MF_03016160, 1, (STRLEN(?targetMotifMatchCigarQ3ZM03MF_03016160) - STRLEN(REPLACE(?targetMotifMatchCigarQ3ZM03MF_03016160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ3ZM03MF_03016160, 1, (STRLEN(?targetMotifMatchCigarQ3ZM03MF_03016160) - STRLEN(REPLACE(?targetMotifMatchCigarQ3ZM03MF_03016160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) . BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_03016161) - 1) AS ?thisPositionOn57) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ3ZM03MF_03016158, 1, (STRLEN(?templateMotifCigarQ3ZM03MF_03016158) - STRLEN(REPLACE(?templateMotifCigarQ3ZM03MF_03016158, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionQ3ZM03159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ3ZM03MF_03016160, 1, (STRLEN(?targetMotifMatchCigarQ3ZM03MF_03016160) - STRLEN(REPLACE(?targetMotifMatchCigarQ3ZM03MF_03016160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ3ZM03MF_03016160, 1, (STRLEN(?targetMotifMatchCigarQ3ZM03MF_03016160) - STRLEN(REPLACE(?targetMotifMatchCigarQ3ZM03MF_03016160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_03016161) - 1) AS ?thisPositionOn58) . BIND(?this AS ?pfs3t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) . FILTER (REGEX('P[ILV]', SUBSTR(?thisSequenceValue, ?thisPositionOn57, (?thisPositionOn58 - ?thisPositionOn57)))) . BIND(URI(CONCAT(STR(?this), '#MF_03016a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP08865180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08865182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08865MF_03016175 . ?templateMotifSequenceMatchRegionP08865180 faldo:begin ?templateMotifSequenceMatchBeginP08865181 . ?templateMotifSequenceMatchBeginP08865181 faldo:position ?templateMotifSequenceMatchBeginPositionP08865176 ; faldo:reference isoform:P08865-1 . ?templateMotifSequenceProfileAlignmentOperationP08865182 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03016186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08865MF_03016177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03016185 . ?targetMotifMatchRegionMatchBeginMF_03016185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03016178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03016186 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016175, 1, (STRLEN(?templateMotifCigarP08865MF_03016175) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016175, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP08865176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016177, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016177) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016177, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016177) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_03016178) - 1) AS ?thisPositionOn63) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016175, 1, (STRLEN(?templateMotifCigarP08865MF_03016175) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016175, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP08865176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016177, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016177) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016177, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016177) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) . BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_03016178) - 1) AS ?thisPositionOn64) . BIND(?this AS ?pfs4t191) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse62) . FILTER ((BOUND(?thisPositionOn63) && BOUND(?thisPositionOn64))) . BIND(URI(CONCAT(STR(?this), '#MF_03016a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionP08865197 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08865199 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08865MF_03016192 . ?templateMotifSequenceMatchRegionP08865197 faldo:begin ?templateMotifSequenceMatchBeginP08865198 . ?templateMotifSequenceMatchBeginP08865198 faldo:position ?templateMotifSequenceMatchBeginPositionP08865193 ; faldo:reference isoform:P08865-1 . ?templateMotifSequenceProfileAlignmentOperationP08865199 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . ?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03016203 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08865MF_03016194 . ?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03016202 . ?targetMotifMatchRegionMatchBeginMF_03016202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03016195 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03016203 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016192, 1, (STRLEN(?templateMotifCigarP08865MF_03016192) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016192, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP08865193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016194, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016194) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016194, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016194) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) . BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_03016195) - 1) AS ?thisPositionOn69) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016192, 1, (STRLEN(?templateMotifCigarP08865MF_03016192) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016192, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionP08865193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016194, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016194) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016194, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016194) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) . BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_03016195) - 1) AS ?thisPositionOn70) . BIND(?this AS ?pfs4t208) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse68) . FILTER ((BOUND(?thisPositionOn69) && BOUND(?thisPositionOn70))) . BIND(URI(CONCAT(STR(?this), '#MF_03016a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionP08865214 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08865216 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08865MF_03016209 . ?templateMotifSequenceMatchRegionP08865214 faldo:begin ?templateMotifSequenceMatchBeginP08865215 . ?templateMotifSequenceMatchBeginP08865215 faldo:position ?templateMotifSequenceMatchBeginPositionP08865210 ; faldo:reference isoform:P08865-1 . ?templateMotifSequenceProfileAlignmentOperationP08865216 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . ?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03016220 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08865MF_03016211 . ?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03016219 . ?targetMotifMatchRegionMatchBeginMF_03016219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03016212 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03016220 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016209, 1, (STRLEN(?templateMotifCigarP08865MF_03016209) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016209, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionP08865210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016211, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016211) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016211, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016211) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) . BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_03016212) - 1) AS ?thisPositionOn75) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016209, 1, (STRLEN(?templateMotifCigarP08865MF_03016209) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016209, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionP08865210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1223) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016211, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016211) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016211, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016211) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), '')))), '[^-]', ''))) AS ?step2224) . BIND(((?step2224 + ?targetMotifMatchRegionMatchBeginPositionMF_03016212) - 1) AS ?thisPositionOn76) . BIND(?this AS ?pfs4t225) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) . FILTER ((BOUND(?thisPositionOn75) && BOUND(?thisPositionOn76))) . BIND(URI(CONCAT(STR(?this), '#MF_03016a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch230 faldo:location ?templateMotifSequenceMatchRegionP08865231 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08865233 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08865MF_03016226 . ?templateMotifSequenceMatchRegionP08865231 faldo:begin ?templateMotifSequenceMatchBeginP08865232 . ?templateMotifSequenceMatchBeginP08865232 faldo:position ?templateMotifSequenceMatchBeginPositionP08865227 ; faldo:reference isoform:P08865-1 . ?templateMotifSequenceProfileAlignmentOperationP08865233 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . ?targetMotifMatch234 faldo:location ?targetMotifMatchRegionMatch235 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03016237 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08865MF_03016228 . ?targetMotifMatchRegionMatch235 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03016236 . ?targetMotifMatchRegionMatchBeginMF_03016236 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03016229 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03016237 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016226, 1, (STRLEN(?templateMotifCigarP08865MF_03016226) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016226, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP08865227) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1238) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016228, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016228) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016228, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016228) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), '')))), '[^-]', ''))) AS ?step2239) . BIND(((?step2239 + ?targetMotifMatchRegionMatchBeginPositionMF_03016229) - 1) AS ?thisPositionOn81) . BIND(?thisPositionOn81 AS ?thisPositionOn82) . BIND(?this AS ?pfs4t240) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse80) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'M')) . BIND(URI(CONCAT(STR(?this), '#MF_03016a78')) AS ?annotation78) . BIND(?this AS ?pfs77) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch245 faldo:location ?templateMotifSequenceMatchRegionP08865246 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08865248 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08865MF_03016241 . ?templateMotifSequenceMatchRegionP08865246 faldo:begin ?templateMotifSequenceMatchBeginP08865247 . ?templateMotifSequenceMatchBeginP08865247 faldo:position ?templateMotifSequenceMatchBeginPositionP08865242 ; faldo:reference isoform:P08865-1 . ?templateMotifSequenceProfileAlignmentOperationP08865248 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . ?targetMotifMatch249 faldo:location ?targetMotifMatchRegionMatch250 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03016252 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08865MF_03016243 . ?targetMotifMatchRegionMatch250 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03016251 . ?targetMotifMatchRegionMatchBeginMF_03016251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03016244 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03016252 edam:has_input signature:MF_03016 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016241, 1, (STRLEN(?templateMotifCigarP08865MF_03016241) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016241, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP08865242) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016243, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016243) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016243, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016243) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) . BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_03016244) - 1) AS ?thisPositionOn87) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08865MF_03016241, 1, (STRLEN(?templateMotifCigarP08865MF_03016241) - STRLEN(REPLACE(?templateMotifCigarP08865MF_03016241, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP08865242) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08865MF_03016243, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016243) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08865MF_03016243, 1, (STRLEN(?targetMotifMatchCigarP08865MF_03016243) - STRLEN(REPLACE(?targetMotifMatchCigarP08865MF_03016243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) . BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_03016244) - 1) AS ?thisPositionOn88) . BIND(?this AS ?pfs5t257) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb85) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse86) . FILTER ((BOUND(?thisPositionOn87) && BOUND(?thisPositionOn88))) . BIND(URI(CONCAT(STR(?this), '#MF_03016a84')) AS ?annotation84) . BIND(?this AS ?pfs83) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag258) . } BIND(IF(BOUND(?tagacetyl), ?caseWithTag258, ?UNBOUND_VARIABLE) AS ?case11) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag259) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag259, ?UNBOUND_VARIABLE) AS ?case12) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?case13) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:40674 . })) . BIND(?this AS ?case14) . } }