@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:839405 up:source unirule:MF_03142 . _:839406 up:source unirule:MF_03142 . _:839407 up:source unirule:MF_03142 . _:839408 up:source unirule:MF_03142 . _:839409 up:source unirule:MF_03142 . _:839410 up:source unirule:MF_03142 . _:839411 up:source unirule:MF_03142 . _:839412 up:source unirule:MF_03142 . _:839413 up:source unirule:MF_03142 . _:839414 up:source unirule:MF_03142 . _:839415 up:source unirule:MF_03142 . _:839416 up:source unirule:MF_03142 . _:839417 up:source unirule:MF_03142 . _:839418 up:source unirule:MF_03142 . _:839419 up:source unirule:MF_03142 . _:839420 up:source unirule:MF_03142 . _:839421 up:source unirule:MF_03142 . _:839422 up:source unirule:MF_03142 . _:839423 up:source unirule:MF_03142 . ?this up:alternativeName ?name1 ; up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0046294 , GO:0051907 , keyword:456 , keyword:479 , keyword:862 ; up:recommendedName ?name0 . ?name0 up:ecName '4.4.1.22' ; up:fullName 'Putative glutathione-dependent formaldehyde-activating enzyme' ; rdf:type up:Structured_Name . ?name1 up:fullName 'S-(hydroxymethyl)glutathione synthase' ; rdf:type up:Structured_Name . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity ; up:enzymeClass . ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'One-carbon metabolism; formaldehyde degradation; formate from formaldehyde (glutathione route): step 1/3.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Gfa family.' . ?case7 up:classifiedWith GO:0008270 . ?pfs8 up:annotation ?annotation9 , ?annotation15 , ?annotation21 , ?annotation27 , ?annotation33 , ?annotation39 , ?annotation45 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:29105 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:29105 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:29105 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:29105 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:29105 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf chebi:29105 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:29105 . _:839424 a rdf:Statement ; up:attribution _:839405 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:839425 a rdf:Statement ; up:attribution _:839406 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:839426 a rdf:Statement ; up:attribution _:839407 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:839427 a rdf:Statement ; up:attribution _:839408 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:839428 a rdf:Statement ; up:attribution _:839409 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:839429 a rdf:Statement ; up:attribution _:839410 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:839430 a rdf:Statement ; up:attribution _:839411 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:839431 a rdf:Statement ; up:attribution _:839412 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:839432 a rdf:Statement ; up:attribution _:839413 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:839433 a rdf:Statement ; up:attribution _:839414 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0051907 . _:839434 a rdf:Statement ; up:attribution _:839415 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0046294 . _:839435 a rdf:Statement ; up:attribution _:839416 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:839436 a rdf:Statement ; up:source unirule:MF_03142 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:839437 a rdf:Statement ; up:attribution _:839417 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:839438 a rdf:Statement ; up:source unirule:MF_03142 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:839439 a rdf:Statement ; up:attribution _:839418 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:839440 a rdf:Statement ; up:source unirule:MF_03142 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:839441 a rdf:Statement ; up:attribution _:839419 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:839442 a rdf:Statement ; up:source unirule:MF_03142 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:839443 a rdf:Statement ; up:attribution _:839420 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:839444 a rdf:Statement ; up:source unirule:MF_03142 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:839445 a rdf:Statement ; up:attribution _:839421 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:839446 a rdf:Statement ; up:source unirule:MF_03142 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:839447 a rdf:Statement ; up:attribution _:839422 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:839448 a rdf:Statement ; up:source unirule:MF_03142 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:839449 a rdf:Statement ; up:attribution _:839423 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03142 #Rule MF_03142 Created by:? on:2012-08-22 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00723 . ?thisOrganism rdfs:subClassOf+ taxon:147538 . BIND(URI(CONCAT(STR(?this), '#MF_03142a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_03142a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_03142a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_03142a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_03142a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_03142a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionC8VDQ356 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC8VDQ358 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarC8VDQ3MF_0072351 . ?templateMotifSequenceMatchRegionC8VDQ356 faldo:begin ?templateMotifSequenceMatchBeginC8VDQ357 . ?templateMotifSequenceMatchBeginC8VDQ357 faldo:position ?templateMotifSequenceMatchBeginPositionC8VDQ352 ; faldo:reference isoform:C8VDQ3-1 . ?templateMotifSequenceProfileAlignmentOperationC8VDQ358 edam:has_input signature:MF_00723 ; rdf:type edam:operation_0300 . ?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0072362 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarC8VDQ3MF_0072353 . ?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0072361 . ?targetMotifMatchRegionMatchBeginMF_0072361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0072354 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0072362 edam:has_input signature:MF_00723 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) . BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn13) . BIND(?thisPositionOn13 AS ?thisPositionOn14) . BIND(?this AS ?pfs1t65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) . BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) . BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) . BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) . BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) . BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs1t80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) . BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'C')) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag84) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag84, ?UNBOUND_VARIABLE) AS ?case7) . } """ . .