@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:852888 up:source unirule:MF_03162 . _:852889 up:source unirule:MF_03162 . _:852890 up:source unirule:MF_03162 . _:852891 up:source unirule:MF_03162 . _:852892 up:source unirule:MF_03162 . _:852893 up:source unirule:MF_03162 . _:852894 up:source unirule:MF_03162 . _:852895 up:source unirule:MF_03162 . _:852896 up:source unirule:MF_03162 . _:852897 up:source unirule:MF_03162 . _:852898 up:source unirule:MF_03162 . _:852899 up:source unirule:MF_03162 . _:852900 up:source unirule:MF_03162 . _:852901 up:source unirule:MF_03162 . _:852902 up:source unirule:MF_03162 . _:852903 up:source unirule:MF_03162 . _:852904 up:source unirule:MF_03162 . _:852905 up:source unirule:MF_03162 . _:852906 up:source unirule:MF_03162 . _:852907 up:source unirule:MF_03162 . _:852908 up:source unirule:MF_03162 . ?this up:alternativeName ?name1 ; up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation7 ; up:classifiedWith GO:0002128 , GO:0002181 , GO:0005737 , GO:0008175 , keyword:489 , keyword:808 , keyword:819 , keyword:949 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.1.1.205' ; up:fullName \"Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase\" ; rdf:type up:Structured_Name . ?name1 up:fullName \"2'-O-ribose RNA methyltransferase TRM7 homolog\" ; rdf:type up:Structured_Name . ?annotation2 a up:Function_Annotation ; rdfs:comment \"Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.\" . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity ; up:enzymeClass . ?annotation5 a up:Subcellular_Location_Annotation . ?annotation5li6 up:cellularComponent . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. TRM7 subfamily.' . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb12 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfs16 up:annotation ?annotation17 , ?annotation23 , ?annotation29 , ?annotation35 , ?annotation41 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:59789 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:59789 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:59789 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; up:ligand ?ligand38 ; rdf:type up:Binding_Site_Annotation . ?pfsb36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?ligand38 rdfs:subClassOf chebi:59789 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:59789 . _:852909 a rdf:Statement ; up:attribution _:852888 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:852910 a rdf:Statement ; up:attribution _:852889 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:852911 a rdf:Statement ; up:attribution _:852890 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:852912 a rdf:Statement ; up:attribution _:852891 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:852913 a rdf:Statement ; up:attribution _:852892 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:852914 a rdf:Statement ; up:attribution _:852893 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:852915 a rdf:Statement ; up:attribution _:852894 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:852916 a rdf:Statement ; up:attribution _:852895 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:489 . _:852917 a rdf:Statement ; up:attribution _:852896 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:852918 a rdf:Statement ; up:attribution _:852897 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:852919 a rdf:Statement ; up:attribution _:852898 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:852920 a rdf:Statement ; up:attribution _:852899 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:852921 a rdf:Statement ; up:attribution _:852900 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008175 . _:852922 a rdf:Statement ; up:attribution _:852901 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002181 . _:852923 a rdf:Statement ; up:attribution _:852902 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002128 . _:852924 a rdf:Statement ; up:source unirule:MF_03162 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:852925 a rdf:Statement ; up:attribution _:852903 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:852926 a rdf:Statement ; up:source unirule:MF_03162 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:852927 a rdf:Statement ; up:attribution _:852904 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:852928 a rdf:Statement ; up:source unirule:MF_03162 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:852929 a rdf:Statement ; up:attribution _:852905 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:852930 a rdf:Statement ; up:source unirule:MF_03162 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:852931 a rdf:Statement ; up:attribution _:852906 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:852932 a rdf:Statement ; up:source unirule:MF_03162 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:852933 a rdf:Statement ; up:attribution _:852907 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:852934 a rdf:Statement ; up:source unirule:MF_03162 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:852935 a rdf:Statement ; up:attribution _:852908 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03162 #Rule MF_03162 Created by:? on:2013-01-08 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03162 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03162a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_03162a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_03162a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_03162a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_03162a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_03162a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP3823852 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3823854 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP38238MF_0316247 . ?templateMotifSequenceMatchRegionP3823852 faldo:begin ?templateMotifSequenceMatchBeginP3823853 . ?templateMotifSequenceMatchBeginP3823853 faldo:position ?templateMotifSequenceMatchBeginPositionP3823848 ; faldo:reference isoform:P38238-1 . ?templateMotifSequenceProfileAlignmentOperationP3823854 edam:has_input signature:MF_03162 ; rdf:type edam:operation_0300 . ?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0316258 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP38238MF_0316249 . ?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0316257 . ?targetMotifMatchRegionMatchBeginMF_0316257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0316250 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0316258 edam:has_input signature:MF_03162 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316247, 1, (STRLEN(?templateMotifCigarP38238MF_0316247) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316247, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP3823848) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316249, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316249) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316249, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316249) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) . BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0316250) - 1) AS ?thisPositionOn14) . BIND(?thisPositionOn14 AS ?thisPositionOn15) . BIND(?this AS ?pfs1t61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03162a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP3823867 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3823869 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP38238MF_0316262 . ?templateMotifSequenceMatchRegionP3823867 faldo:begin ?templateMotifSequenceMatchBeginP3823868 . ?templateMotifSequenceMatchBeginP3823868 faldo:position ?templateMotifSequenceMatchBeginPositionP3823863 ; faldo:reference isoform:P38238-1 . ?templateMotifSequenceProfileAlignmentOperationP3823869 edam:has_input signature:MF_03162 ; rdf:type edam:operation_0300 . ?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0316273 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP38238MF_0316264 . ?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0316272 . ?targetMotifMatchRegionMatchBeginMF_0316272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0316265 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0316273 edam:has_input signature:MF_03162 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316262, 1, (STRLEN(?templateMotifCigarP38238MF_0316262) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316262, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP3823863) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) . BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0316265) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs2t76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'G')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316262, 1, (STRLEN(?templateMotifCigarP38238MF_0316262) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316262, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP3823863) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) . BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0316265) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs2t79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER (REGEX('[WF]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316262, 1, (STRLEN(?templateMotifCigarP38238MF_0316262) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316262, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP3823863) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) . BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0316265) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs2t82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316262, 1, (STRLEN(?templateMotifCigarP38238MF_0316262) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316262, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP3823863) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) . BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0316265) - 1) AS ?thisPositionOn39) . BIND(?thisPositionOn39 AS ?thisPositionOn40) . BIND(?this AS ?pfs2t85) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) . FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316262, 1, (STRLEN(?templateMotifCigarP38238MF_0316262) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316262, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP3823863) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) . BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0316265) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs2t88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'D')) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4892 . BIND(?this AS ?case9) . } } """ . .