@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:853545 up:source unirule:MF_03163 . _:853546 up:source unirule:MF_03163 . _:853547 up:source unirule:MF_03163 . _:853548 up:source unirule:MF_03163 . _:853549 up:source unirule:MF_03163 . _:853550 up:source unirule:MF_03163 . _:853551 up:source unirule:MF_03163 . _:853552 up:source unirule:MF_03163 . _:853553 up:source unirule:MF_03163 . _:853554 up:source unirule:MF_03163 . _:853555 up:source unirule:MF_03163 . _:853556 up:source unirule:MF_03163 . _:853557 up:source unirule:MF_03163 . _:853558 up:source unirule:MF_03163 . _:853559 up:source unirule:MF_03163 . _:853560 up:source unirule:MF_03163 . _:853561 up:source unirule:MF_03163 . _:853562 up:source unirule:MF_03163 . _:853563 up:source unirule:MF_03163 . _:853564 up:source unirule:MF_03163 . _:853565 up:source unirule:MF_03163 . _:853566 up:source unirule:MF_03163 . _:853567 up:source unirule:MF_03163 . _:853568 up:source unirule:MF_03163 . _:853569 up:source unirule:MF_03163 . _:853570 up:source unirule:MF_03163 . _:853571 up:source unirule:MF_03163 . _:853572 up:source unirule:MF_03163 . _:853573 up:source unirule:MF_03163 . _:853574 up:source unirule:MF_03163 . _:853575 up:source unirule:MF_03163 . _:853576 up:source unirule:MF_03163 . ?this up:annotation ?annotation0 , ?annotation2 ; up:classifiedWith GO:0005730 , GO:0031167 , keyword:489 , keyword:539 , keyword:690 , keyword:698 , keyword:808 , keyword:949 . ?annotation0 a up:Subcellular_Location_Annotation . ?annotation0li1 up:cellularComponent . ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.' . ?case3 up:alternativeName ?name6 , ?name7 ; up:classifiedWith GO:0008650 , GO:0030687 , GO:0070039 ; up:recommendedName ?name4 . ?name4 up:ecName '2.1.1.-' ; up:fullName ?nameValue5 ; rdf:type up:Structured_Name . ?name6 up:fullName \"2'-O-ribose RNA methyltransferase\" ; rdf:type up:Structured_Name . ?name7 up:fullName 'S-adenosyl-L-methionine-dependent methyltransferase' ; rdf:type up:Structured_Name . ?case8 up:alternativeName ?name10 , ?name11 , ?name12 ; up:classifiedWith GO:0008649 , GO:0030688 ; up:recommendedName ?name9 . ?name9 up:ecName '2.1.1.-' ; up:fullName 'pre-rRNA processing protein FTSJ3' ; rdf:type up:Structured_Name . ?name10 up:fullName \"2'-O-ribose RNA methyltransferase SPB1 homolog\" ; rdf:type up:Structured_Name . ?name11 up:fullName 'Protein ftsJ homolog 3' ; rdf:type up:Structured_Name . ?name12 up:fullName 'Putative rRNA methyltransferase 3' ; rdf:type up:Structured_Name . ?case13 up:alternativeName ?name15 ; up:classifiedWith GO:0008649 ; up:recommendedName ?name14 . ?name14 up:ecName '2.1.1.-' ; up:fullName 'Putative rRNA methyltransferase' ; rdf:type up:Structured_Name . ?name15 up:fullName \"2'-O-ribose RNA methyltransferase SPB1 homolog\" ; rdf:type up:Structured_Name . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb18 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfs22 up:annotation ?annotation23 , ?annotation29 , ?annotation35 , ?annotation41 , ?annotation47 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:59789 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:59789 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; up:ligand ?ligand38 ; rdf:type up:Binding_Site_Annotation . ?pfsb36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?ligand38 rdfs:subClassOf chebi:59789 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:59789 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf chebi:59789 . ?sam53 up:classifiedWith keyword:175 . ?coiledCoil54 faldo:begin ?coiledCoilb55 ; faldo:end ?coiledCoile56 . ?coiledCoilb55 faldo:position ?coiledCoilbp57 . ?coiledCoile56 faldo:position ?coiledCoilep58 . ?keyword59 up:range ?coiledCoil54 . _:853577 a rdf:Statement ; up:attribution _:853545 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:853578 a rdf:Statement ; up:attribution _:853546 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:853579 a rdf:Statement ; up:attribution _:853547 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:489 . _:853580 a rdf:Statement ; up:attribution _:853548 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:853581 a rdf:Statement ; up:attribution _:853549 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:690 . _:853582 a rdf:Statement ; up:attribution _:853550 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:698 . _:853583 a rdf:Statement ; up:attribution _:853551 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:853584 a rdf:Statement ; up:attribution _:853552 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:853585 a rdf:Statement ; up:attribution _:853553 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005730 . _:853586 a rdf:Statement ; up:attribution _:853554 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0031167 . _:853587 a rdf:Statement ; up:attribution _:853555 ; rdf:subject ?case3 ; rdf:predicate up:recommendedName ; rdf:object ?name4 . _:853588 a rdf:Statement ; up:attribution _:853556 ; rdf:subject ?case3 ; rdf:predicate up:alternativeName ; rdf:object ?name6 . _:853589 a rdf:Statement ; up:attribution _:853557 ; rdf:subject ?case3 ; rdf:predicate up:alternativeName ; rdf:object ?name7 . _:853590 a rdf:Statement ; up:attribution _:853558 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0030687 . _:853591 a rdf:Statement ; up:attribution _:853559 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0070039 . _:853592 a rdf:Statement ; up:attribution _:853560 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008650 . _:853593 a rdf:Statement ; up:attribution _:853561 ; rdf:subject ?case8 ; rdf:predicate up:recommendedName ; rdf:object ?name9 . _:853594 a rdf:Statement ; up:attribution _:853562 ; rdf:subject ?case8 ; rdf:predicate up:alternativeName ; rdf:object ?name10 . _:853595 a rdf:Statement ; up:attribution _:853563 ; rdf:subject ?case8 ; rdf:predicate up:alternativeName ; rdf:object ?name11 . _:853596 a rdf:Statement ; up:attribution _:853564 ; rdf:subject ?case8 ; rdf:predicate up:alternativeName ; rdf:object ?name12 . _:853597 a rdf:Statement ; up:attribution _:853565 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object GO:0030688 . _:853598 a rdf:Statement ; up:attribution _:853566 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008649 . _:853599 a rdf:Statement ; up:attribution _:853567 ; rdf:subject ?case13 ; rdf:predicate up:recommendedName ; rdf:object ?name14 . _:853600 a rdf:Statement ; up:attribution _:853568 ; rdf:subject ?case13 ; rdf:predicate up:alternativeName ; rdf:object ?name15 . _:853601 a rdf:Statement ; up:attribution _:853569 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008649 . _:853602 a rdf:Statement ; up:source unirule:MF_03163 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:853603 a rdf:Statement ; up:attribution _:853570 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:853604 a rdf:Statement ; up:source unirule:MF_03163 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:853605 a rdf:Statement ; up:attribution _:853571 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:853606 a rdf:Statement ; up:source unirule:MF_03163 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:853607 a rdf:Statement ; up:attribution _:853572 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:853608 a rdf:Statement ; up:source unirule:MF_03163 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:853609 a rdf:Statement ; up:attribution _:853573 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:853610 a rdf:Statement ; up:source unirule:MF_03163 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:853611 a rdf:Statement ; up:attribution _:853574 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:853612 a rdf:Statement ; up:source unirule:MF_03163 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:853613 a rdf:Statement ; up:attribution _:853575 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:853614 a rdf:Statement ; up:attribution _:853576 ; rdf:subject ?sam53 ; rdf:predicate up:classifiedWith ; rdf:object keyword:175 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03163 #Rule MF_03163 Created by:? on:2013-01-08 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03163 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03163a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03163a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionP2558265 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2558267 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25582MF_0316360 . ?templateMotifSequenceMatchRegionP2558265 faldo:begin ?templateMotifSequenceMatchBeginP2558266 . ?templateMotifSequenceMatchBeginP2558266 faldo:position ?templateMotifSequenceMatchBeginPositionP2558261 ; faldo:reference isoform:P25582-1 . ?templateMotifSequenceProfileAlignmentOperationP2558267 edam:has_input signature:MF_03163 ; rdf:type edam:operation_0300 . ?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0316371 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25582MF_0316362 . ?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0316370 . ?targetMotifMatchRegionMatchBeginMF_0316370 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0316363 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0316371 edam:has_input signature:MF_03163 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25582MF_0316360, 1, (STRLEN(?templateMotifCigarP25582MF_0316360) - STRLEN(REPLACE(?templateMotifCigarP25582MF_0316360, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP2558261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25582MF_0316362, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316362) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316362, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25582MF_0316362, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316362) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316362, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) . BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0316363) - 1) AS ?thisPositionOn20) . BIND(?thisPositionOn20 AS ?thisPositionOn21) . BIND(?this AS ?pfs1t74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03163a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP2558280 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2558282 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25582MF_0316375 . ?templateMotifSequenceMatchRegionP2558280 faldo:begin ?templateMotifSequenceMatchBeginP2558281 . ?templateMotifSequenceMatchBeginP2558281 faldo:position ?templateMotifSequenceMatchBeginPositionP2558276 ; faldo:reference isoform:P25582-1 . ?templateMotifSequenceProfileAlignmentOperationP2558282 edam:has_input signature:MF_03163 ; rdf:type edam:operation_0300 . ?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0316386 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25582MF_0316377 . ?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0316385 . ?targetMotifMatchRegionMatchBeginMF_0316385 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0316378 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0316386 edam:has_input signature:MF_03163 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25582MF_0316375, 1, (STRLEN(?templateMotifCigarP25582MF_0316375) - STRLEN(REPLACE(?templateMotifCigarP25582MF_0316375, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP2558276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25582MF_0316377, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316377) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25582MF_0316377, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316377) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) . BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0316378) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs2t89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'G')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25582MF_0316375, 1, (STRLEN(?templateMotifCigarP25582MF_0316375) - STRLEN(REPLACE(?templateMotifCigarP25582MF_0316375, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionP2558276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25582MF_0316377, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316377) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25582MF_0316377, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316377) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) . BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0316378) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs2t92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER (REGEX('[WF]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25582MF_0316375, 1, (STRLEN(?templateMotifCigarP25582MF_0316375) - STRLEN(REPLACE(?templateMotifCigarP25582MF_0316375, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP2558276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25582MF_0316377, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316377) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25582MF_0316377, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316377) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) . BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0316378) - 1) AS ?thisPositionOn39) . BIND(?thisPositionOn39 AS ?thisPositionOn40) . BIND(?this AS ?pfs2t95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25582MF_0316375, 1, (STRLEN(?templateMotifCigarP25582MF_0316375) - STRLEN(REPLACE(?templateMotifCigarP25582MF_0316375, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP2558276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25582MF_0316377, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316377) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25582MF_0316377, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316377) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0316378) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs2t98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25582MF_0316375, 1, (STRLEN(?templateMotifCigarP25582MF_0316375) - STRLEN(REPLACE(?templateMotifCigarP25582MF_0316375, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP2558276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25582MF_0316377, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316377) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25582MF_0316377, 1, (STRLEN(?targetMotifMatchCigarP25582MF_0316377) - STRLEN(REPLACE(?targetMotifMatchCigarP25582MF_0316377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0316378) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs2t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'D')) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case3) . BIND(URI(CONCAT(STR(?this), '#MF_03163a4')) AS ?name4) . OPTIONAL { ?this up:encodedBy ?gene105 . ?gene105 up:locusName ?geneLocus103 . } OPTIONAL { ?this up:encodedBy ?gene105 . ?gene105 up:orfName ?geneOrf104 . } BIND(IF(BOUND(?geneLocus103), ?geneLocus103, ?geneOrf104) AS ?part102) . BIND(CONCAT('AdoMet-dependent rRNA methyltransferase ', ?part102) AS ?nameValue5) . BIND(URI(CONCAT(STR(?this), '#MF_03163a6')) AS ?name6) . BIND(URI(CONCAT(STR(?this), '#MF_03163a7')) AS ?name7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case8) . BIND(URI(CONCAT(STR(?this), '#MF_03163a9')) AS ?name9) . BIND(URI(CONCAT(STR(?this), '#MF_03163a10')) AS ?name10) . BIND(URI(CONCAT(STR(?this), '#MF_03163a11')) AS ?name11) . BIND(URI(CONCAT(STR(?this), '#MF_03163a12')) AS ?name12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon106 {taxon:7742 taxon:4751} ?thisOrganism rdfs:subClassOf+ ?supertaxon106 . })) . BIND(?this AS ?case13) . BIND(URI(CONCAT(STR(?this), '#MF_03163a14')) AS ?name14) . BIND(URI(CONCAT(STR(?this), '#MF_03163a15')) AS ?name15) . } OPTIONAL { ?this up:annotation ?samcc107 ; up:sequence ?thisSequence . ?samcc107 up:range ?samccr108 ; rdf:type up:Coiled_Coil_Annotation . ?samccr108 faldo:begin ?samccb109 ; faldo:end ?samcce110 . ?samccb109 faldo:position ?samccbp111 ; faldo:reference ?thisSequence . ?samcce110 faldo:position ?samccep112 ; faldo:reference ?thisSequence . BIND(?this AS ?sam53) . } BIND(URI(CONCAT(STR(?this), '#MF_03163a59')) AS ?keyword59) . } """ . .