CONSTRUCT { _:849633 up:source unirule:MF_03172 . _:849634 up:source unirule:MF_03172 . _:849635 up:source unirule:MF_03172 . _:849636 up:source unirule:MF_03172 . _:849637 up:source unirule:MF_03172 . _:849638 up:source unirule:MF_03172 . _:849639 up:source unirule:MF_03172 . _:849640 up:source unirule:MF_03172 . _:849641 up:source unirule:MF_03172 . _:849642 up:source unirule:MF_03172 . _:849643 up:source unirule:MF_03172 . _:849644 up:source unirule:MF_03172 . _:849645 up:source unirule:MF_03172 . _:849646 up:source unirule:MF_03172 . _:849647 up:source unirule:MF_03172 . _:849648 up:source unirule:MF_03172 . _:849649 up:source unirule:MF_03172 . _:849650 up:source unirule:MF_03172 . _:849651 up:source unirule:MF_03172 . _:849652 up:source unirule:MF_03172 . _:849653 up:source unirule:MF_03172 . _:849654 up:source unirule:MF_03172 . _:849655 up:source unirule:MF_03172 . _:849656 up:source unirule:MF_03172 . _:849657 up:source unirule:MF_03172 . _:849658 up:source unirule:MF_03172 . _:849659 up:source unirule:MF_03172 . _:849660 up:source unirule:MF_03172 . _:849661 up:source unirule:MF_03172 . _:849662 up:source unirule:MF_03172 . _:849663 up:source unirule:MF_03172 . _:849664 up:source unirule:MF_03172 . _:849665 up:source unirule:MF_03172 . _:849666 up:source unirule:MF_03172 . _:849667 up:source unirule:MF_03172 . _:849668 up:source unirule:MF_03172 . _:849669 up:source unirule:MF_03172 . _:849670 up:source unirule:MF_03172 . _:849671 up:source unirule:MF_03172 . _:849672 up:source unirule:MF_03172 . ?this up:annotation ?annotation0 , ?annotation2 , ?annotation3 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0005634 , GO:0005737 , GO:0006221 , GO:0009041 , keyword:418 , keyword:539 , keyword:547 , keyword:665 , keyword:67 , keyword:808 , keyword:963 . ?annotation0 up:activity ?activity1 ; rdf:type up:Catalytic_Activity_Annotation . ?activity1 up:catalyticActivity <http://rdf.rhea-db.org/24400>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.4.14>. ?annotation2 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 Mg(2+) ion per monomer.' . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'Monomer.' . ?annotation4 a up:Domain_Annotation ; rdfs:comment 'Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and dissambling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis.' . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.' . ?case6 up:alternativeName ?name8 , ?name9 , ?name10 ; up:recommendedName ?name7 . ?name7 up:ecName '2.7.4.14' ; up:fullName 'Uridylate kinase' ; up:shortName 'UK' ; rdf:type up:Structured_Name . ?name8 up:fullName 'ATP:UMP phosphotransferase' ; rdf:type up:Structured_Name . ?name9 up:fullName 'Deoxycytidylate kinase' ; up:shortName 'CK' , 'dCMP kinase' ; rdf:type up:Structured_Name . ?name10 up:fullName 'Uridine monophosphate kinase' ; up:shortName 'UMP kinase' , 'UMPK' ; rdf:type up:Structured_Name . ?case11 up:alternativeName ?name13 , ?name14 , ?name15 ; up:recommendedName ?name12 . ?name12 up:ecName '2.7.4.14' ; up:fullName 'UMP-CMP kinase' ; rdf:type up:Structured_Name . ?name13 up:fullName 'Deoxycytidylate kinase' ; up:shortName 'CK' , 'dCMP kinase' ; rdf:type up:Structured_Name . ?name14 up:ecName '2.7.4.6' ; up:fullName 'Nucleoside-diphosphate kinase' ; rdf:type up:Structured_Name . ?name15 up:fullName 'Uridine monophosphate/cytidine monophosphate kinase' ; up:shortName 'UMP/CMP kinase' , 'UMP/CMPK' ; rdf:type up:Structured_Name . ?case16 up:classifiedWith GO:0004127 . ?case20 up:alternativeName ?name22 , ?name23 ; up:recommendedName ?name21 . ?name21 up:ecName '2.7.4.14' ; up:fullName 'UMP-CMP kinase' ; rdf:type up:Structured_Name . ?name22 up:fullName 'Deoxycytidylate kinase' ; up:shortName 'CK' , 'dCMP kinase' ; rdf:type up:Structured_Name . ?name23 up:fullName 'Uridine monophosphate/cytidine monophosphate kinase' ; up:shortName 'UMP/CMP kinase' , 'UMP/CMPK' ; rdf:type up:Structured_Name . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; rdf:type up:Region_Annotation ; rdfs:comment 'NMPbind' . ?pfsb26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; rdf:type up:Region_Annotation ; rdfs:comment 'LID' . ?pfsb32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:30616 . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:30616 . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf chebi:58043 . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf chebi:58043 . ?pfs64 up:annotation ?annotation65 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; up:ligand ?ligand68 ; rdf:type up:Binding_Site_Annotation . ?pfsb66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand68 rdfs:subClassOf chebi:58043 . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; up:ligand ?ligand75 ; rdf:type up:Binding_Site_Annotation . ?pfsb73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?ligand75 rdfs:subClassOf chebi:30616 . ?pfs78 up:annotation ?annotation79 . ?annotation79 faldo:begin ?pfsb80 ; faldo:end ?pfse81 ; up:ligand ?ligand82 ; rdf:type up:Binding_Site_Annotation . ?pfsb80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfse81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?ligand82 rdfs:subClassOf chebi:58043 . ?pfs85 up:annotation ?annotation86 . ?annotation86 faldo:begin ?pfsb87 ; faldo:end ?pfse88 ; up:ligand ?ligand89 ; rdf:type up:Binding_Site_Annotation . ?pfsb87 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?pfse88 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?ligand89 rdfs:subClassOf chebi:58043 . ?pfs92 up:annotation ?annotation93 . ?annotation93 faldo:begin ?pfsb94 ; faldo:end ?pfse95 ; up:ligand ?ligand96 ; rdf:type up:Binding_Site_Annotation . ?pfsb94 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?pfse95 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?ligand96 rdfs:subClassOf chebi:60377 . ?pfs99 up:annotation ?annotation100 . ?annotation100 faldo:begin ?pfsb101 ; faldo:end ?pfse102 ; up:ligand ?ligand103 ; rdf:type up:Binding_Site_Annotation . ?pfsb101 faldo:position ?thisPositionOn104 ; rdf:type faldo:ExactPosition . ?pfse102 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?ligand103 rdfs:subClassOf chebi:58043 . _:849673 a rdf:Statement ; up:attribution _:849633 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:849674 a rdf:Statement ; up:attribution _:849634 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:849675 a rdf:Statement ; up:attribution _:849635 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:849676 a rdf:Statement ; up:attribution _:849636 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:849677 a rdf:Statement ; up:attribution _:849637 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:849678 a rdf:Statement ; up:attribution _:849638 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:849679 a rdf:Statement ; up:attribution _:849639 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:418 . _:849680 a rdf:Statement ; up:attribution _:849640 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:849681 a rdf:Statement ; up:attribution _:849641 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:665 . _:849682 a rdf:Statement ; up:attribution _:849642 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:849683 a rdf:Statement ; up:attribution _:849643 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:849684 a rdf:Statement ; up:attribution _:849644 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:849685 a rdf:Statement ; up:attribution _:849645 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:849686 a rdf:Statement ; up:attribution _:849646 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005634 . _:849687 a rdf:Statement ; up:attribution _:849647 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009041 . _:849688 a rdf:Statement ; up:attribution _:849648 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006221 . _:849689 a rdf:Statement ; up:attribution _:849649 ; rdf:subject ?case6 ; rdf:predicate up:recommendedName ; rdf:object ?name7 . _:849690 a rdf:Statement ; up:attribution _:849650 ; rdf:subject ?case6 ; rdf:predicate up:alternativeName ; rdf:object ?name8 . _:849691 a rdf:Statement ; up:attribution _:849651 ; rdf:subject ?case6 ; rdf:predicate up:alternativeName ; rdf:object ?name9 . _:849692 a rdf:Statement ; up:attribution _:849652 ; rdf:subject ?case6 ; rdf:predicate up:alternativeName ; rdf:object ?name10 . _:849693 a rdf:Statement ; up:attribution _:849653 ; rdf:subject ?case11 ; rdf:predicate up:recommendedName ; rdf:object ?name12 . _:849694 a rdf:Statement ; up:attribution _:849654 ; rdf:subject ?case11 ; rdf:predicate up:alternativeName ; rdf:object ?name13 . _:849695 a rdf:Statement ; up:attribution _:849655 ; rdf:subject ?case11 ; rdf:predicate up:alternativeName ; rdf:object ?name14 . _:849696 a rdf:Statement ; up:attribution _:849656 ; rdf:subject ?case11 ; rdf:predicate up:alternativeName ; rdf:object ?name15 . _:849697 a rdf:Statement ; up:attribution _:849657 ; rdf:subject ?case16 ; rdf:predicate up:classifiedWith ; rdf:object GO:0004127 . _:849698 a rdf:Statement ; up:attribution _:849658 ; rdf:subject ?case20 ; rdf:predicate up:recommendedName ; rdf:object ?name21 . _:849699 a rdf:Statement ; up:attribution _:849659 ; rdf:subject ?case20 ; rdf:predicate up:alternativeName ; rdf:object ?name22 . _:849700 a rdf:Statement ; up:attribution _:849660 ; rdf:subject ?case20 ; rdf:predicate up:alternativeName ; rdf:object ?name23 . _:849701 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:849702 a rdf:Statement ; up:attribution _:849661 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:849703 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:849704 a rdf:Statement ; up:attribution _:849662 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:849705 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:849706 a rdf:Statement ; up:attribution _:849663 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:849707 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:849708 a rdf:Statement ; up:attribution _:849664 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:849709 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:849710 a rdf:Statement ; up:attribution _:849665 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:849711 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:849712 a rdf:Statement ; up:attribution _:849666 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:849713 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:849714 a rdf:Statement ; up:attribution _:849667 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:849715 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:849716 a rdf:Statement ; up:attribution _:849668 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:849717 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:849718 a rdf:Statement ; up:attribution _:849669 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:849719 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:849720 a rdf:Statement ; up:attribution _:849670 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:849721 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs92 ; rdf:predicate up:annotation ; rdf:object ?annotation93 . _:849722 a rdf:Statement ; up:attribution _:849671 ; rdf:subject ?pfs92 ; rdf:predicate up:annotation ; rdf:object ?annotation93 . _:849723 a rdf:Statement ; up:source unirule:MF_03172 ; rdf:subject ?pfs99 ; rdf:predicate up:annotation ; rdf:object ?annotation100 . _:849724 a rdf:Statement ; up:attribution _:849672 ; rdf:subject ?pfs99 ; rdf:predicate up:annotation ; rdf:object ?annotation100 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03172 #Rule MF_03172 Created by:ipedruzz on:2013-03-15 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03172 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03172a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03172a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_03172a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_03172a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_03172a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionP15700111 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700113 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172106 . ?templateMotifSequenceMatchRegionP15700111 faldo:begin ?templateMotifSequenceMatchBeginP15700112 . ?templateMotifSequenceMatchBeginP15700112 faldo:position ?templateMotifSequenceMatchBeginPositionP15700107 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700113 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172117 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172108 . ?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172116 . ?targetMotifMatchRegionMatchBeginMF_03172116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172109 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172117 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172106, 1, (STRLEN(?templateMotifCigarP15700MF_03172106) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172106, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP15700107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172108, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172108) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172108, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172108) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) . BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_03172109) - 1) AS ?thisPositionOn28) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172106, 1, (STRLEN(?templateMotifCigarP15700MF_03172106) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172106, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP15700107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172108, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172108) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172108, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172108) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) . BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_03172109) - 1) AS ?thisPositionOn29) . BIND(?this AS ?pfs1t122) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) . FILTER ((BOUND(?thisPositionOn28) && BOUND(?thisPositionOn29))) . BIND(URI(CONCAT(STR(?this), '#MF_03172a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP15700128 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700130 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172123 . ?templateMotifSequenceMatchRegionP15700128 faldo:begin ?templateMotifSequenceMatchBeginP15700129 . ?templateMotifSequenceMatchBeginP15700129 faldo:position ?templateMotifSequenceMatchBeginPositionP15700124 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700130 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172134 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172125 . ?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172133 . ?targetMotifMatchRegionMatchBeginMF_03172133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172126 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172134 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172123, 1, (STRLEN(?templateMotifCigarP15700MF_03172123) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172123, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionP15700124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172125, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172125) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172125, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172125) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) . BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_03172126) - 1) AS ?thisPositionOn34) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172123, 1, (STRLEN(?templateMotifCigarP15700MF_03172123) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172123, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP15700124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172125, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172125) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172125, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172125) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) . BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_03172126) - 1) AS ?thisPositionOn35) . BIND(?this AS ?pfs1t139) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) . FILTER ((BOUND(?thisPositionOn34) && BOUND(?thisPositionOn35))) . BIND(URI(CONCAT(STR(?this), '#MF_03172a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP15700145 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700147 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172140 . ?templateMotifSequenceMatchRegionP15700145 faldo:begin ?templateMotifSequenceMatchBeginP15700146 . ?templateMotifSequenceMatchBeginP15700146 faldo:position ?templateMotifSequenceMatchBeginPositionP15700141 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700147 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172151 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172142 . ?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172150 . ?targetMotifMatchRegionMatchBeginMF_03172150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172143 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172151 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172140, 1, (STRLEN(?templateMotifCigarP15700MF_03172140) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172140, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP15700141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172142, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172142) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172142, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172142) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) . BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_03172143) - 1) AS ?thisPositionOn41) . BIND(?thisPositionOn41 AS ?thisPositionOn42) . BIND(?this AS ?pfs1t154) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER (BOUND(?thisPositionOn41)) . BIND(URI(CONCAT(STR(?this), '#MF_03172a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP15700160 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700162 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172155 . ?templateMotifSequenceMatchRegionP15700160 faldo:begin ?templateMotifSequenceMatchBeginP15700161 . ?templateMotifSequenceMatchBeginP15700161 faldo:position ?templateMotifSequenceMatchBeginPositionP15700156 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700162 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172166 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172157 . ?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172165 . ?targetMotifMatchRegionMatchBeginMF_03172165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172158 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172166 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172155, 1, (STRLEN(?templateMotifCigarP15700MF_03172155) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172155, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP15700156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172157, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172157) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172157, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172157) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) . BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_03172158) - 1) AS ?thisPositionOn48) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172155, 1, (STRLEN(?templateMotifCigarP15700MF_03172155) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172155, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP15700156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172157, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172157) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172157, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172157) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) . BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_03172158) - 1) AS ?thisPositionOn49) . BIND(?this AS ?pfs1t171) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]GKGT', SUBSTR(?thisSequenceValue, ?thisPositionOn48, (?thisPositionOn49 - ?thisPositionOn48)))) . BIND(URI(CONCAT(STR(?this), '#MF_03172a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionP15700177 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700179 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172172 . ?templateMotifSequenceMatchRegionP15700177 faldo:begin ?templateMotifSequenceMatchBeginP15700178 . ?templateMotifSequenceMatchBeginP15700178 faldo:position ?templateMotifSequenceMatchBeginPositionP15700173 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700179 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172183 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172174 . ?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172182 . ?targetMotifMatchRegionMatchBeginMF_03172182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172175 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172183 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172172, 1, (STRLEN(?templateMotifCigarP15700MF_03172172) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172172, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP15700173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172174, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172174) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172174, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172174) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) . BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_03172175) - 1) AS ?thisPositionOn55) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172172, 1, (STRLEN(?templateMotifCigarP15700MF_03172172) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172172, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP15700173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172174, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172174) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172174, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172174) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) . BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_03172175) - 1) AS ?thisPositionOn56) . BIND(?this AS ?pfs1t188) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][IL][VL]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, (?thisPositionOn56 - ?thisPositionOn55)))) . BIND(URI(CONCAT(STR(?this), '#MF_03172a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionP15700194 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700196 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172189 . ?templateMotifSequenceMatchRegionP15700194 faldo:begin ?templateMotifSequenceMatchBeginP15700195 . ?templateMotifSequenceMatchBeginP15700195 faldo:position ?templateMotifSequenceMatchBeginPositionP15700190 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700196 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172200 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172191 . ?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172199 . ?targetMotifMatchRegionMatchBeginMF_03172199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172192 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172200 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172189, 1, (STRLEN(?templateMotifCigarP15700MF_03172189) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172189, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP15700190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172191, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172191) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172191, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172191) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) . BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_03172192) - 1) AS ?thisPositionOn62) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172189, 1, (STRLEN(?templateMotifCigarP15700MF_03172189) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172189, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP15700190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172191, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172191) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172191, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172191) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) . BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_03172192) - 1) AS ?thisPositionOn63) . BIND(?this AS ?pfs1t205) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) . FILTER (REGEX('G[FY]PR', SUBSTR(?thisSequenceValue, ?thisPositionOn62, (?thisPositionOn63 - ?thisPositionOn62)))) . BIND(URI(CONCAT(STR(?this), '#MF_03172a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP15700211 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700213 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172206 . ?templateMotifSequenceMatchRegionP15700211 faldo:begin ?templateMotifSequenceMatchBeginP15700212 . ?templateMotifSequenceMatchBeginP15700212 faldo:position ?templateMotifSequenceMatchBeginPositionP15700207 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700213 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172217 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172208 . ?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172216 . ?targetMotifMatchRegionMatchBeginMF_03172216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172209 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172217 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172206, 1, (STRLEN(?templateMotifCigarP15700MF_03172206) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172206, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP15700207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172208, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172208) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172208, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172208) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) . BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_03172209) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs1t220) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03172a65')) AS ?annotation65) . BIND(?this AS ?pfs64) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionP15700226 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700228 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172221 . ?templateMotifSequenceMatchRegionP15700226 faldo:begin ?templateMotifSequenceMatchBeginP15700227 . ?templateMotifSequenceMatchBeginP15700227 faldo:position ?templateMotifSequenceMatchBeginPositionP15700222 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700228 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172232 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172223 . ?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172231 . ?targetMotifMatchRegionMatchBeginMF_03172231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172224 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172232 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172221, 1, (STRLEN(?templateMotifCigarP15700MF_03172221) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172221, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionP15700222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172223, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172223) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172223, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172223) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) . BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_03172224) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs1t235) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03172a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionP15700241 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700243 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172236 . ?templateMotifSequenceMatchRegionP15700241 faldo:begin ?templateMotifSequenceMatchBeginP15700242 . ?templateMotifSequenceMatchBeginP15700242 faldo:position ?templateMotifSequenceMatchBeginPositionP15700237 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700243 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172247 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172238 . ?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172246 . ?targetMotifMatchRegionMatchBeginMF_03172246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172239 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172247 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172236, 1, (STRLEN(?templateMotifCigarP15700MF_03172236) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172236, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP15700237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172238, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172238) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172238, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172238) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) . BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_03172239) - 1) AS ?thisPositionOn83) . BIND(?thisPositionOn83 AS ?thisPositionOn84) . BIND(?this AS ?pfs1t250) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03172a79')) AS ?annotation79) . BIND(?this AS ?pfs78) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP15700256 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700258 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172251 . ?templateMotifSequenceMatchRegionP15700256 faldo:begin ?templateMotifSequenceMatchBeginP15700257 . ?templateMotifSequenceMatchBeginP15700257 faldo:position ?templateMotifSequenceMatchBeginPositionP15700252 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700258 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172262 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172253 . ?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172261 . ?targetMotifMatchRegionMatchBeginMF_03172261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172254 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172262 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172251, 1, (STRLEN(?templateMotifCigarP15700MF_03172251) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172251, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP15700252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172253, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172253) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172253, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172253) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) . BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_03172254) - 1) AS ?thisPositionOn90) . BIND(?thisPositionOn90 AS ?thisPositionOn91) . BIND(?this AS ?pfs1t265) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb87) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse88) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03172a86')) AS ?annotation86) . BIND(?this AS ?pfs85) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionP20425271 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP20425273 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP20425MF_03172266 . ?templateMotifSequenceMatchRegionP20425271 faldo:begin ?templateMotifSequenceMatchBeginP20425272 . ?templateMotifSequenceMatchBeginP20425272 faldo:position ?templateMotifSequenceMatchBeginPositionP20425267 ; faldo:reference isoform:P20425-1 . ?templateMotifSequenceProfileAlignmentOperationP20425273 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172277 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP20425MF_03172268 . ?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172276 . ?targetMotifMatchRegionMatchBeginMF_03172276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172269 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172277 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:4751 . })) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP20425MF_03172266, 1, (STRLEN(?templateMotifCigarP20425MF_03172266) - STRLEN(REPLACE(?templateMotifCigarP20425MF_03172266, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionP20425267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP20425MF_03172268, 1, (STRLEN(?targetMotifMatchCigarP20425MF_03172268) - STRLEN(REPLACE(?targetMotifMatchCigarP20425MF_03172268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP20425MF_03172268, 1, (STRLEN(?targetMotifMatchCigarP20425MF_03172268) - STRLEN(REPLACE(?targetMotifMatchCigarP20425MF_03172268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) . BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_03172269) - 1) AS ?thisPositionOn97) . BIND(?thisPositionOn97 AS ?thisPositionOn98) . BIND(?this AS ?pfs2t280) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb94) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse95) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_03172a93')) AS ?annotation93) . BIND(?this AS ?pfs92) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch285 faldo:location ?templateMotifSequenceMatchRegionP15700286 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15700288 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15700MF_03172281 . ?templateMotifSequenceMatchRegionP15700286 faldo:begin ?templateMotifSequenceMatchBeginP15700287 . ?templateMotifSequenceMatchBeginP15700287 faldo:position ?templateMotifSequenceMatchBeginPositionP15700282 ; faldo:reference isoform:P15700-1 . ?templateMotifSequenceProfileAlignmentOperationP15700288 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?targetMotifMatch289 faldo:location ?targetMotifMatchRegionMatch290 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03172292 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15700MF_03172283 . ?targetMotifMatchRegionMatch290 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03172291 . ?targetMotifMatchRegionMatchBeginMF_03172291 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03172284 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03172292 edam:has_input signature:MF_03172 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15700MF_03172281, 1, (STRLEN(?templateMotifCigarP15700MF_03172281) - STRLEN(REPLACE(?templateMotifCigarP15700MF_03172281, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionP15700282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1293) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15700MF_03172283, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172283) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15700MF_03172283, 1, (STRLEN(?targetMotifMatchCigarP15700MF_03172283) - STRLEN(REPLACE(?targetMotifMatchCigarP15700MF_03172283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), '')))), '[^-]', ''))) AS ?step2294) . BIND(((?step2294 + ?targetMotifMatchRegionMatchBeginPositionMF_03172284) - 1) AS ?thisPositionOn104) . BIND(?thisPositionOn104 AS ?thisPositionOn105) . BIND(?this AS ?pfs3t295) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfsb101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfse102) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn104, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_03172a100')) AS ?annotation100) . BIND(?this AS ?pfs99) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case6) . BIND(URI(CONCAT(STR(?this), '#MF_03172a7')) AS ?name7) . BIND(URI(CONCAT(STR(?this), '#MF_03172a8')) AS ?name8) . BIND(URI(CONCAT(STR(?this), '#MF_03172a9')) AS ?name9) . BIND(URI(CONCAT(STR(?this), '#MF_03172a10')) AS ?name10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case11) . BIND(URI(CONCAT(STR(?this), '#MF_03172a12')) AS ?name12) . BIND(URI(CONCAT(STR(?this), '#MF_03172a13')) AS ?name13) . BIND(URI(CONCAT(STR(?this), '#MF_03172a14')) AS ?name14) . BIND(URI(CONCAT(STR(?this), '#MF_03172a15')) AS ?name15) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:4751 . })) . BIND(?this AS ?case16) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33083 . BIND(?this AS ?case17) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:147537 . BIND(?this AS ?case18) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon296 {taxon:7742 taxon:4751} ?thisOrganism rdfs:subClassOf+ ?supertaxon296 . })) . BIND(?this AS ?case19) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon297 {taxon:4751 taxon:7742} ?thisOrganism rdfs:subClassOf+ ?supertaxon297 . })) . BIND(?this AS ?case20) . BIND(URI(CONCAT(STR(?this), '#MF_03172a21')) AS ?name21) . BIND(URI(CONCAT(STR(?this), '#MF_03172a22')) AS ?name22) . BIND(URI(CONCAT(STR(?this), '#MF_03172a23')) AS ?name23) . } }