CONSTRUCT { _:854326 up:source unirule:MF_03179 . _:854327 up:source unirule:MF_03179 . _:854328 up:source unirule:MF_03179 . _:854329 up:source unirule:MF_03179 . _:854330 up:source unirule:MF_03179 . _:854331 up:source unirule:MF_03179 . _:854332 up:source unirule:MF_03179 . _:854333 up:source unirule:MF_03179 . _:854334 up:source unirule:MF_03179 . _:854335 up:source unirule:MF_03179 . _:854336 up:source unirule:MF_03179 . _:854337 up:source unirule:MF_03179 . _:854338 up:source unirule:MF_03179 . _:854339 up:source unirule:MF_03179 . _:854340 up:source unirule:MF_03179 . _:854341 up:source unirule:MF_03179 . _:854342 up:source unirule:MF_03179 . _:854343 up:source unirule:MF_03179 . _:854344 up:source unirule:MF_03179 . _:854345 up:source unirule:MF_03179 . _:854346 up:source unirule:MF_03179 . _:854347 up:source unirule:MF_03179 . _:854348 up:source unirule:MF_03179 . _:854349 up:source unirule:MF_03179 . _:854350 up:source unirule:MF_03179 . _:854351 up:source unirule:MF_03179 . _:854352 up:source unirule:MF_03179 . _:854353 up:source unirule:MF_03179 . _:854354 up:source unirule:MF_03179 . _:854355 up:source unirule:MF_03179 . _:854356 up:source unirule:MF_03179 . _:854357 up:source unirule:MF_03179 . _:854358 up:source unirule:MF_03179 . _:854359 up:source unirule:MF_03179 . _:854360 up:source unirule:MF_03179 . _:854361 up:source unirule:MF_03179 . _:854362 up:source unirule:MF_03179 . _:854363 up:source unirule:MF_03179 . _:854364 up:source unirule:MF_03179 . _:854365 up:source unirule:MF_03179 . ?this up:annotation ?annotation0 , ?annotation1 , ?annotation3 , ?annotation4 , ?annotation6 ; up:classifiedWith GO:0002949 , GO:0005739 , GO:0016747 , keyword:12 , keyword:479 , keyword:496 , keyword:808 , keyword:819 . ?annotation0 a up:Function_Annotation ; rdfs:comment 'Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance.' . ?annotation1 up:activity ?activity2 ; rdf:type up:Catalytic_Activity_Annotation . ?activity2 up:catalyticActivity <http://rdf.rhea-db.org/37059>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.3.1.234>. ?annotation3 up:cofactor chebi:60240 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 divalent metal cation per subunit.' . ?annotation4 a up:Subcellular_Location_Annotation . ?annotation4li5 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the KAE1 / TsaD family.' . ?case7 up:alternativeName ?name9 , ?name10 , ?name12 ; up:recommendedName ?name8 . ?name8 up:ecName '2.3.1.234' ; up:fullName 'tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial' ; rdf:type up:Structured_Name . ?name9 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ; up:shortName 't(6)A synthase' ; rdf:type up:Structured_Name . ?name10 up:fullName ?nameValue11 ; rdf:type up:Structured_Name . ?name12 up:fullName ?nameValue13 ; rdf:type up:Structured_Name . ?case14 up:alternativeName ?name16 , ?name17 , ?name19 ; up:recommendedName ?name15 . ?name15 up:ecName '2.3.1.234' ; up:fullName 'tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial' ; rdf:type up:Structured_Name . ?name16 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ; up:shortName 't(6)A synthase' ; rdf:type up:Structured_Name . ?name17 up:fullName ?nameValue18 ; rdf:type up:Structured_Name . ?name19 up:fullName ?nameValue20 ; rdf:type up:Structured_Name . ?case25 up:alternativeName ?name27 , ?name28 , ?name30 ; up:recommendedName ?name26 . ?name26 up:ecName '2.3.1.234' ; up:fullName 'Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial' ; rdf:type up:Structured_Name . ?name27 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ; up:shortName 't(6)A synthase' ; rdf:type up:Structured_Name . ?name28 up:fullName ?nameValue29 ; rdf:type up:Structured_Name . ?name30 up:fullName ?nameValue31 ; rdf:type up:Structured_Name . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf ?molecule37 . ?molecule37 rdfs:label 'substrate' . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf ?molecule45 . ?molecule45 rdfs:label 'substrate' . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; up:ligand ?ligand52 ; rdf:type up:Binding_Site_Annotation . ?pfsb50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?ligand52 rdfs:subClassOf chebi:60240 . ?pfs55 up:annotation ?annotation56 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation . ?pfsb57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf chebi:60240 . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf chebi:60240 . ?pfs69 up:annotation ?annotation70 . ?annotation70 faldo:begin ?pfsb71 ; faldo:end ?pfse72 ; up:ligand ?ligand73 ; rdf:type up:Binding_Site_Annotation . ?pfsb71 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse72 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?ligand73 rdfs:subClassOf ?molecule74 . ?molecule74 rdfs:label 'substrate' . ?pfs77 up:annotation ?annotation78 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; up:ligand ?ligand81 ; rdf:type up:Binding_Site_Annotation . ?pfsb79 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?ligand81 rdfs:subClassOf ?molecule82 . ?molecule82 rdfs:label 'substrate' . ?pfs85 up:annotation ?annotation86 . ?annotation86 faldo:begin ?pfsb87 ; faldo:end ?pfse88 ; up:ligand ?ligand89 ; rdf:type up:Binding_Site_Annotation . ?pfsb87 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse88 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?ligand89 rdfs:subClassOf ?molecule90 . ?molecule90 rdfs:label 'substrate' . ?pfs93 up:annotation ?annotation94 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; up:ligand ?ligand97 ; rdf:type up:Binding_Site_Annotation . ?pfsb95 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?ligand97 rdfs:subClassOf ?molecule98 . ?molecule98 rdfs:label 'substrate' . ?pfs101 up:annotation ?annotation102 . ?annotation102 faldo:begin ?pfsb103 ; faldo:end ?pfse104 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb103 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?pfse104 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?pfs107 up:annotation ?annotation108 . ?annotation108 faldo:begin ?pfsb109 ; faldo:end ?pfse110 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb109 faldo:position ?thisPositionOn111 ; rdf:type faldo:ExactPosition . ?pfse110 faldo:position ?thisPositionOn112 ; rdf:type faldo:ExactPosition . ?pfs113 up:annotation ?annotation114 . ?annotation114 faldo:begin ?pfsb115 ; faldo:end ?pfse116 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb115 faldo:position ?thisPositionOn117 ; rdf:type faldo:ExactPosition . ?pfse116 faldo:position ?thisPositionOn118 ; rdf:type faldo:ExactPosition . ?pfs119 up:annotation ?annotation120 . ?annotation120 faldo:begin ?pfsb121 ; faldo:end ?pfse122 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb121 faldo:position ?thisPositionOn123 ; rdf:type faldo:ExactPosition . ?pfse122 faldo:position ?thisPositionOn124 ; rdf:type faldo:ExactPosition . ?pfs125 up:annotation ?annotation126 . ?annotation126 faldo:begin ?pfsb127 ; faldo:end ?pfse128 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb127 faldo:position ?thisPositionOn129 ; rdf:type faldo:ExactPosition . ?pfse128 faldo:position ?thisPositionOn130 ; rdf:type faldo:ExactPosition . ?pfs131 up:annotation ?annotation132 . ?annotation132 faldo:begin ?pfsb133 ; faldo:end ?pfse134 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb133 faldo:position ?thisPositionOn135 ; rdf:type faldo:ExactPosition . ?pfse134 faldo:position ?thisPositionOn136 ; rdf:type faldo:ExactPosition . _:854366 a rdf:Statement ; up:attribution _:854326 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:854367 a rdf:Statement ; up:attribution _:854327 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:854368 a rdf:Statement ; up:attribution _:854328 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:854369 a rdf:Statement ; up:attribution _:854329 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:854370 a rdf:Statement ; up:attribution _:854330 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:854371 a rdf:Statement ; up:attribution _:854331 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:12 . _:854372 a rdf:Statement ; up:attribution _:854332 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:496 . _:854373 a rdf:Statement ; up:attribution _:854333 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:854374 a rdf:Statement ; up:attribution _:854334 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:854375 a rdf:Statement ; up:attribution _:854335 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:854376 a rdf:Statement ; up:attribution _:854336 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005739 . _:854377 a rdf:Statement ; up:attribution _:854337 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016747 . _:854378 a rdf:Statement ; up:attribution _:854338 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002949 . _:854379 a rdf:Statement ; up:attribution _:854339 ; rdf:subject ?case7 ; rdf:predicate up:recommendedName ; rdf:object ?name8 . _:854380 a rdf:Statement ; up:attribution _:854340 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name9 . _:854381 a rdf:Statement ; up:attribution _:854341 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name10 . _:854382 a rdf:Statement ; up:attribution _:854342 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name12 . _:854383 a rdf:Statement ; up:attribution _:854343 ; rdf:subject ?case14 ; rdf:predicate up:recommendedName ; rdf:object ?name15 . _:854384 a rdf:Statement ; up:attribution _:854344 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name16 . _:854385 a rdf:Statement ; up:attribution _:854345 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name17 . _:854386 a rdf:Statement ; up:attribution _:854346 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name19 . _:854387 a rdf:Statement ; up:attribution _:854347 ; rdf:subject ?case25 ; rdf:predicate up:recommendedName ; rdf:object ?name26 . _:854388 a rdf:Statement ; up:attribution _:854348 ; rdf:subject ?case25 ; rdf:predicate up:alternativeName ; rdf:object ?name27 . _:854389 a rdf:Statement ; up:attribution _:854349 ; rdf:subject ?case25 ; rdf:predicate up:alternativeName ; rdf:object ?name28 . _:854390 a rdf:Statement ; up:attribution _:854350 ; rdf:subject ?case25 ; rdf:predicate up:alternativeName ; rdf:object ?name30 . _:854391 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:854392 a rdf:Statement ; up:attribution _:854351 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:854393 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:854394 a rdf:Statement ; up:attribution _:854352 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:854395 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:854396 a rdf:Statement ; up:attribution _:854353 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:854397 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:854398 a rdf:Statement ; up:attribution _:854354 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:854399 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:854400 a rdf:Statement ; up:attribution _:854355 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:854401 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:854402 a rdf:Statement ; up:attribution _:854356 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:854403 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:854404 a rdf:Statement ; up:attribution _:854357 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:854405 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:854406 a rdf:Statement ; up:attribution _:854358 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:854407 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:854408 a rdf:Statement ; up:attribution _:854359 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:854409 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:854410 a rdf:Statement ; up:attribution _:854360 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:854411 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . _:854412 a rdf:Statement ; up:attribution _:854361 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . _:854413 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs113 ; rdf:predicate up:annotation ; rdf:object ?annotation114 . _:854414 a rdf:Statement ; up:attribution _:854362 ; rdf:subject ?pfs113 ; rdf:predicate up:annotation ; rdf:object ?annotation114 . _:854415 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs119 ; rdf:predicate up:annotation ; rdf:object ?annotation120 . _:854416 a rdf:Statement ; up:attribution _:854363 ; rdf:subject ?pfs119 ; rdf:predicate up:annotation ; rdf:object ?annotation120 . _:854417 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs125 ; rdf:predicate up:annotation ; rdf:object ?annotation126 . _:854418 a rdf:Statement ; up:attribution _:854364 ; rdf:subject ?pfs125 ; rdf:predicate up:annotation ; rdf:object ?annotation126 . _:854419 a rdf:Statement ; up:source unirule:MF_03179 ; rdf:subject ?pfs131 ; rdf:predicate up:annotation ; rdf:object ?annotation132 . _:854420 a rdf:Statement ; up:attribution _:854365 ; rdf:subject ?pfs131 ; rdf:predicate up:annotation ; rdf:object ?annotation132 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03179 #Rule MF_03179 Created by:ipedruzz on:2013-10-17 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01445 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03179a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03179a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_03179a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_03179a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_03179a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionP43122142 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122144 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP43122MF_01445137 . ?templateMotifSequenceMatchRegionP43122142 faldo:begin ?templateMotifSequenceMatchBeginP43122143 . ?templateMotifSequenceMatchBeginP43122143 faldo:position ?templateMotifSequenceMatchBeginPositionP43122138 ; faldo:reference isoform:P43122-1 . ?templateMotifSequenceProfileAlignmentOperationP43122144 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445148 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP43122MF_01445139 . ?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445147 . ?targetMotifMatchRegionMatchBeginMF_01445147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445140 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445148 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445137, 1, (STRLEN(?templateMotifCigarP43122MF_01445137) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445137, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP43122138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445139, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445139) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445139, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445139) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_01445140) - 1) AS ?thisPositionOn38) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445137, 1, (STRLEN(?templateMotifCigarP43122MF_01445137) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445137, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP43122138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445139, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445139) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445139, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445139) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) . BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_01445140) - 1) AS ?thisPositionOn39) . BIND(?this AS ?pfs1t153) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse35) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]SG[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)))) . BIND(URI(CONCAT(STR(?this), '#MF_03179a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP43122159 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122161 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP43122MF_01445154 . ?templateMotifSequenceMatchRegionP43122159 faldo:begin ?templateMotifSequenceMatchBeginP43122160 . ?templateMotifSequenceMatchBeginP43122160 faldo:position ?templateMotifSequenceMatchBeginPositionP43122155 ; faldo:reference isoform:P43122-1 . ?templateMotifSequenceProfileAlignmentOperationP43122161 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445165 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP43122MF_01445156 . ?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445164 . ?targetMotifMatchRegionMatchBeginMF_01445164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445157 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445165 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445154, 1, (STRLEN(?templateMotifCigarP43122MF_01445154) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445154, CONCAT('^(?:-*[^-]){', STR(((328 - ?templateMotifSequenceMatchBeginPositionP43122155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445156, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445156) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445156, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445156) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) . BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_01445157) - 1) AS ?thisPositionOn46) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445154, 1, (STRLEN(?templateMotifCigarP43122MF_01445154) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445154, CONCAT('^(?:-*[^-]){', STR(((329 - ?templateMotifSequenceMatchBeginPositionP43122155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445156, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445156) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445156, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445156) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) . BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01445157) - 1) AS ?thisPositionOn47) . BIND(?this AS ?pfs1t170) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse43) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]N', SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)))) . BIND(URI(CONCAT(STR(?this), '#MF_03179a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP43122176 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122178 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP43122MF_01445171 . ?templateMotifSequenceMatchRegionP43122176 faldo:begin ?templateMotifSequenceMatchBeginP43122177 . ?templateMotifSequenceMatchBeginP43122177 faldo:position ?templateMotifSequenceMatchBeginPositionP43122172 ; faldo:reference isoform:P43122-1 . ?templateMotifSequenceProfileAlignmentOperationP43122178 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445182 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP43122MF_01445173 . ?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445181 . ?targetMotifMatchRegionMatchBeginMF_01445181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445174 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445182 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445171, 1, (STRLEN(?templateMotifCigarP43122MF_01445171) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445171, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionP43122172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445173, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445173) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445173, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445173) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) . BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_01445174) - 1) AS ?thisPositionOn53) . BIND(?thisPositionOn53 AS ?thisPositionOn54) . BIND(?this AS ?pfs1t185) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03179a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionP43122191 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122193 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP43122MF_01445186 . ?templateMotifSequenceMatchRegionP43122191 faldo:begin ?templateMotifSequenceMatchBeginP43122192 . ?templateMotifSequenceMatchBeginP43122192 faldo:position ?templateMotifSequenceMatchBeginPositionP43122187 ; faldo:reference isoform:P43122-1 . ?templateMotifSequenceProfileAlignmentOperationP43122193 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445197 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP43122MF_01445188 . ?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445196 . ?targetMotifMatchRegionMatchBeginMF_01445196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445189 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445197 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445186, 1, (STRLEN(?templateMotifCigarP43122MF_01445186) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445186, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionP43122187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445188, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445188) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445188, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445188) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) . BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_01445189) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs1t200) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03179a56')) AS ?annotation56) . BIND(?this AS ?pfs55) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionP43122206 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122208 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP43122MF_01445201 . ?templateMotifSequenceMatchRegionP43122206 faldo:begin ?templateMotifSequenceMatchBeginP43122207 . ?templateMotifSequenceMatchBeginP43122207 faldo:position ?templateMotifSequenceMatchBeginPositionP43122202 ; faldo:reference isoform:P43122-1 . ?templateMotifSequenceProfileAlignmentOperationP43122208 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445212 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP43122MF_01445203 . ?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445211 . ?targetMotifMatchRegionMatchBeginMF_01445211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445204 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445212 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445201, 1, (STRLEN(?templateMotifCigarP43122MF_01445201) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445201, CONCAT('^(?:-*[^-]){', STR(((361 - ?templateMotifSequenceMatchBeginPositionP43122202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445203, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445203) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445203, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445203) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) . BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_01445204) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs1t215) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03179a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionP43122221 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122223 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP43122MF_01445216 . ?templateMotifSequenceMatchRegionP43122221 faldo:begin ?templateMotifSequenceMatchBeginP43122222 . ?templateMotifSequenceMatchBeginP43122222 faldo:position ?templateMotifSequenceMatchBeginPositionP43122217 ; faldo:reference isoform:P43122-1 . ?templateMotifSequenceProfileAlignmentOperationP43122223 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445227 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP43122MF_01445218 . ?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445226 . ?targetMotifMatchRegionMatchBeginMF_01445226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445219 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445227 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445216, 1, (STRLEN(?templateMotifCigarP43122MF_01445216) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445216, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP43122217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445218, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445218) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445218, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445218) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) . BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_01445219) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs1t230) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse72) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03179a70')) AS ?annotation70) . BIND(?this AS ?pfs69) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch235 faldo:location ?templateMotifSequenceMatchRegionP43122236 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122238 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP43122MF_01445231 . ?templateMotifSequenceMatchRegionP43122236 faldo:begin ?templateMotifSequenceMatchBeginP43122237 . ?templateMotifSequenceMatchBeginP43122237 faldo:position ?templateMotifSequenceMatchBeginPositionP43122232 ; faldo:reference isoform:P43122-1 . ?templateMotifSequenceProfileAlignmentOperationP43122238 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch239 faldo:location ?targetMotifMatchRegionMatch240 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445242 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP43122MF_01445233 . ?targetMotifMatchRegionMatch240 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445241 . ?targetMotifMatchRegionMatchBeginMF_01445241 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445234 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445242 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445231, 1, (STRLEN(?templateMotifCigarP43122MF_01445231) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445231, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP43122232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445233, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445233) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445233, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445233) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) . BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_01445234) - 1) AS ?thisPositionOn83) . BIND(?thisPositionOn83 AS ?thisPositionOn84) . BIND(?this AS ?pfs1t245) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse80) . FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03179a78')) AS ?annotation78) . BIND(?this AS ?pfs77) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionP43122251 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122253 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP43122MF_01445246 . ?templateMotifSequenceMatchRegionP43122251 faldo:begin ?templateMotifSequenceMatchBeginP43122252 . ?templateMotifSequenceMatchBeginP43122252 faldo:position ?templateMotifSequenceMatchBeginPositionP43122247 ; faldo:reference isoform:P43122-1 . ?templateMotifSequenceProfileAlignmentOperationP43122253 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445257 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP43122MF_01445248 . ?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445256 . ?targetMotifMatchRegionMatchBeginMF_01445256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445249 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445257 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445246, 1, (STRLEN(?templateMotifCigarP43122MF_01445246) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445246, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP43122247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445248, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445248) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445248, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445248) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) . BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_01445249) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs1t260) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb87) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse88) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03179a86')) AS ?annotation86) . BIND(?this AS ?pfs85) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch265 faldo:location ?templateMotifSequenceMatchRegionP43122266 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122268 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP43122MF_01445261 . ?templateMotifSequenceMatchRegionP43122266 faldo:begin ?templateMotifSequenceMatchBeginP43122267 . ?templateMotifSequenceMatchBeginP43122267 faldo:position ?templateMotifSequenceMatchBeginPositionP43122262 ; faldo:reference isoform:P43122-1 . ?templateMotifSequenceProfileAlignmentOperationP43122268 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch269 faldo:location ?targetMotifMatchRegionMatch270 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445272 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP43122MF_01445263 . ?targetMotifMatchRegionMatch270 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445271 . ?targetMotifMatchRegionMatchBeginMF_01445271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445264 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445272 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445261, 1, (STRLEN(?templateMotifCigarP43122MF_01445261) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445261, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionP43122262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1273) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445263, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445263) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445263, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445263) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), '')))), '[^-]', ''))) AS ?step2274) . BIND(((?step2274 + ?targetMotifMatchRegionMatchBeginPositionMF_01445264) - 1) AS ?thisPositionOn99) . BIND(?thisPositionOn99 AS ?thisPositionOn100) . BIND(?this AS ?pfs1t275) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse96) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03179a94')) AS ?annotation94) . BIND(?this AS ?pfs93) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch280 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0281 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0283 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9H4B0MF_01445276 . ?templateMotifSequenceMatchRegionQ9H4B0281 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0282 . ?templateMotifSequenceMatchBeginQ9H4B0282 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0277 ; faldo:reference isoform:Q9H4B0-1 . ?templateMotifSequenceProfileAlignmentOperationQ9H4B0283 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch284 faldo:location ?targetMotifMatchRegionMatch285 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445287 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445278 . ?targetMotifMatchRegionMatch285 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445286 . ?targetMotifMatchRegionMatchBeginMF_01445286 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445279 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445287 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445276, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445276) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445276, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionQ9H4B0277) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1288) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445278, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445278) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445278, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445278) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), '')))), '[^-]', ''))) AS ?step2289) . BIND(((?step2289 + ?targetMotifMatchRegionMatchBeginPositionMF_01445279) - 1) AS ?thisPositionOn105) . BIND(?thisPositionOn105 AS ?thisPositionOn106) . BIND(?this AS ?pfs2t290) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse104) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03179a102')) AS ?annotation102) . BIND(?this AS ?pfs101) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch295 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0296 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0298 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9H4B0MF_01445291 . ?templateMotifSequenceMatchRegionQ9H4B0296 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0297 . ?templateMotifSequenceMatchBeginQ9H4B0297 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0292 ; faldo:reference isoform:Q9H4B0-1 . ?templateMotifSequenceProfileAlignmentOperationQ9H4B0298 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch299 faldo:location ?targetMotifMatchRegionMatch300 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445302 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445293 . ?targetMotifMatchRegionMatch300 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445301 . ?targetMotifMatchRegionMatchBeginMF_01445301 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445294 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445302 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445291, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445291) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445291, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionQ9H4B0292) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1303) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445293, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445293) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445293, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445293) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), '')))), '[^-]', ''))) AS ?step2304) . BIND(((?step2304 + ?targetMotifMatchRegionMatchBeginPositionMF_01445294) - 1) AS ?thisPositionOn111) . BIND(?thisPositionOn111 AS ?thisPositionOn112) . BIND(?this AS ?pfs2t305) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfsb109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfse110) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn111, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03179a108')) AS ?annotation108) . BIND(?this AS ?pfs107) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch310 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0311 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0313 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9H4B0MF_01445306 . ?templateMotifSequenceMatchRegionQ9H4B0311 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0312 . ?templateMotifSequenceMatchBeginQ9H4B0312 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0307 ; faldo:reference isoform:Q9H4B0-1 . ?templateMotifSequenceProfileAlignmentOperationQ9H4B0313 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch314 faldo:location ?targetMotifMatchRegionMatch315 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445317 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445308 . ?targetMotifMatchRegionMatch315 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445316 . ?targetMotifMatchRegionMatchBeginMF_01445316 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445309 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445317 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445306, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445306) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445306, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionQ9H4B0307) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1318) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445308, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445308) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445308, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445308) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), '')))), '[^-]', ''))) AS ?step2319) . BIND(((?step2319 + ?targetMotifMatchRegionMatchBeginPositionMF_01445309) - 1) AS ?thisPositionOn117) . BIND(?thisPositionOn117 AS ?thisPositionOn118) . BIND(?this AS ?pfs2t320) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb115) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse116) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03179a114')) AS ?annotation114) . BIND(?this AS ?pfs113) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch325 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0326 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0328 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9H4B0MF_01445321 . ?templateMotifSequenceMatchRegionQ9H4B0326 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0327 . ?templateMotifSequenceMatchBeginQ9H4B0327 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0322 ; faldo:reference isoform:Q9H4B0-1 . ?templateMotifSequenceProfileAlignmentOperationQ9H4B0328 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch329 faldo:location ?targetMotifMatchRegionMatch330 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445332 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445323 . ?targetMotifMatchRegionMatch330 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445331 . ?targetMotifMatchRegionMatchBeginMF_01445331 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445324 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445332 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445321, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445321) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445321, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionQ9H4B0322) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1333) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445323, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445323) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445323, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445323, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445323) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445323, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), '')))), '[^-]', ''))) AS ?step2334) . BIND(((?step2334 + ?targetMotifMatchRegionMatchBeginPositionMF_01445324) - 1) AS ?thisPositionOn123) . BIND(?thisPositionOn123 AS ?thisPositionOn124) . BIND(?this AS ?pfs2t335) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse122) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn123, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03179a120')) AS ?annotation120) . BIND(?this AS ?pfs119) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch340 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0341 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0343 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9H4B0MF_01445336 . ?templateMotifSequenceMatchRegionQ9H4B0341 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0342 . ?templateMotifSequenceMatchBeginQ9H4B0342 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0337 ; faldo:reference isoform:Q9H4B0-1 . ?templateMotifSequenceProfileAlignmentOperationQ9H4B0343 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch344 faldo:location ?targetMotifMatchRegionMatch345 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445347 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445338 . ?targetMotifMatchRegionMatch345 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445346 . ?targetMotifMatchRegionMatchBeginMF_01445346 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445339 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445347 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445336, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445336) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445336, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionQ9H4B0337) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1348) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445338, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445338) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445338, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445338) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), '')))), '[^-]', ''))) AS ?step2349) . BIND(((?step2349 + ?targetMotifMatchRegionMatchBeginPositionMF_01445339) - 1) AS ?thisPositionOn129) . BIND(?thisPositionOn129 AS ?thisPositionOn130) . BIND(?this AS ?pfs2t350) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfsb127) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfse128) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn129, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03179a126')) AS ?annotation126) . BIND(?this AS ?pfs125) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch355 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0356 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0358 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9H4B0MF_01445351 . ?templateMotifSequenceMatchRegionQ9H4B0356 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0357 . ?templateMotifSequenceMatchBeginQ9H4B0357 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0352 ; faldo:reference isoform:Q9H4B0-1 . ?templateMotifSequenceProfileAlignmentOperationQ9H4B0358 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?targetMotifMatch359 faldo:location ?targetMotifMatchRegionMatch360 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445362 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445353 . ?targetMotifMatchRegionMatch360 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445361 . ?targetMotifMatchRegionMatchBeginMF_01445361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445354 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01445362 edam:has_input signature:MF_01445 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445351, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445351) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445351, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionQ9H4B0352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445353, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445353) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445353, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445353) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) . BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_01445354) - 1) AS ?thisPositionOn135) . BIND(?thisPositionOn135 AS ?thisPositionOn136) . BIND(?this AS ?pfs2t365) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfsb133) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfse134) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn135, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03179a132')) AS ?annotation132) . BIND(?this AS ?pfs131) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case7) . BIND(URI(CONCAT(STR(?this), '#MF_03179a8')) AS ?name8) . BIND(URI(CONCAT(STR(?this), '#MF_03179a9')) AS ?name9) . BIND(URI(CONCAT(STR(?this), '#MF_03179a10')) AS ?name10) . OPTIONAL { ?this up:encodedBy ?gene369 . ?gene369 up:locusName ?geneLocus367 . } OPTIONAL { ?this up:encodedBy ?gene369 . ?gene369 up:orfName ?geneOrf368 . } BIND(IF(BOUND(?geneLocus367), ?geneLocus367, ?geneOrf368) AS ?part366) . BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part366) AS ?nameValue11) . BIND(URI(CONCAT(STR(?this), '#MF_03179a12')) AS ?name12) . OPTIONAL { ?this up:encodedBy ?gene373 . ?gene373 up:locusName ?geneLocus371 . } OPTIONAL { ?this up:encodedBy ?gene373 . ?gene373 up:orfName ?geneOrf372 . } BIND(IF(BOUND(?geneLocus371), ?geneLocus371, ?geneOrf372) AS ?part370) . BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part370) AS ?nameValue13) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case14) . BIND(URI(CONCAT(STR(?this), '#MF_03179a15')) AS ?name15) . BIND(URI(CONCAT(STR(?this), '#MF_03179a16')) AS ?name16) . BIND(URI(CONCAT(STR(?this), '#MF_03179a17')) AS ?name17) . OPTIONAL { ?this up:encodedBy ?gene377 . ?gene377 up:locusName ?geneLocus375 . } OPTIONAL { ?this up:encodedBy ?gene377 . ?gene377 up:orfName ?geneOrf376 . } BIND(IF(BOUND(?geneLocus375), ?geneLocus375, ?geneOrf376) AS ?part374) . BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part374) AS ?nameValue18) . BIND(URI(CONCAT(STR(?this), '#MF_03179a19')) AS ?name19) . OPTIONAL { ?this up:encodedBy ?gene381 . ?gene381 up:locusName ?geneLocus379 . } OPTIONAL { ?this up:encodedBy ?gene381 . ?gene381 up:orfName ?geneOrf380 . } BIND(IF(BOUND(?geneLocus379), ?geneLocus379, ?geneOrf380) AS ?part378) . BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part378) AS ?nameValue20) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(?this AS ?case21) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:6237 . BIND(?this AS ?case22) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:147537 . BIND(?this AS ?case23) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:7742 . })) . BIND(?this AS ?case24) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon382 {taxon:7742 taxon:4751} ?thisOrganism rdfs:subClassOf+ ?supertaxon382 . })) . BIND(?this AS ?case25) . BIND(URI(CONCAT(STR(?this), '#MF_03179a26')) AS ?name26) . BIND(URI(CONCAT(STR(?this), '#MF_03179a27')) AS ?name27) . BIND(URI(CONCAT(STR(?this), '#MF_03179a28')) AS ?name28) . OPTIONAL { ?this up:encodedBy ?gene386 . ?gene386 up:locusName ?geneLocus384 . } OPTIONAL { ?this up:encodedBy ?gene386 . ?gene386 up:orfName ?geneOrf385 . } BIND(IF(BOUND(?geneLocus384), ?geneLocus384, ?geneOrf385) AS ?part383) . BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part383) AS ?nameValue29) . BIND(URI(CONCAT(STR(?this), '#MF_03179a30')) AS ?name30) . OPTIONAL { ?this up:encodedBy ?gene390 . ?gene390 up:locusName ?geneLocus388 . } OPTIONAL { ?this up:encodedBy ?gene390 . ?gene390 up:orfName ?geneOrf389 . } BIND(IF(BOUND(?geneLocus388), ?geneLocus388, ?geneOrf389) AS ?part387) . BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part387) AS ?nameValue31) . } }