@prefix rdf: . @prefix rdfs: . @prefix rdf4j: . @prefix sesame: . @prefix owl: . @prefix xsd: . @prefix fn: . a , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; ; ; ; """CONSTRUCT { _:883044 up:source unirule:MF_03211 . _:883045 up:source unirule:MF_03211 . _:883046 up:source unirule:MF_03211 . _:883047 up:source unirule:MF_03211 . _:883048 up:source unirule:MF_03211 . _:883049 up:source unirule:MF_03211 . _:883050 up:source unirule:MF_03211 . _:883051 up:source unirule:MF_03211 . _:883052 up:source unirule:MF_03211 . _:883053 up:source unirule:MF_03211 . _:883054 up:source unirule:MF_03211 . _:883055 up:source unirule:MF_03211 . _:883056 up:source unirule:MF_03211 . _:883057 up:source unirule:MF_03211 . _:883058 up:source unirule:MF_03211 . _:883059 up:source unirule:MF_03211 . _:883060 up:source unirule:MF_03211 . _:883061 up:source unirule:MF_03211 . _:883062 up:source unirule:MF_03211 . _:883063 up:source unirule:MF_03211 . _:883064 up:source unirule:MF_03211 . _:883065 up:source unirule:MF_03211 . _:883066 up:source unirule:MF_03211 . _:883067 up:source unirule:MF_03211 . ?this up:alternativeName ?name1 ; up:annotation ?annotation2 , ?annotation4 , ?annotation6 , ?annotation8 ; up:classifiedWith GO:0000154 , GO:0005524 , GO:0005730 , GO:0008080 , GO:0042274 , GO:0051391 , keyword:12 , keyword:539 , keyword:547 , keyword:67 , keyword:698 , keyword:808 , keyword:819 ; up:recommendedName ?name0 . ?name0 up:ecName '2.3.1.-' ; up:fullName 'RNA cytidine acetyltransferase' ; rdf:type up:Structured_Name . ?name1 up:fullName '18S rRNA cytosine acetyltransferase' ; rdf:type up:Structured_Name . ?annotation2 up:activity ?activity3 ; rdf:type up:Catalytic_Activity_Annotation . ?activity3 up:catalyticActivity . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity . ?annotation6 a up:Subcellular_Location_Annotation . ?annotation6li7 up:cellularComponent . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the RNA cytidine acetyltransferase family. NAT10 subfamily.' . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:30616 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:57288 . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; up:ligand ?ligand33 ; rdf:type up:Binding_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand33 rdfs:subClassOf chebi:57288 . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:30616 . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:57288 . _:883068 a rdf:Statement ; up:attribution _:883044 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:883069 a rdf:Statement ; up:attribution _:883045 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:883070 a rdf:Statement ; up:attribution _:883046 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:883071 a rdf:Statement ; up:attribution _:883047 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:883072 a rdf:Statement ; up:attribution _:883048 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:883073 a rdf:Statement ; up:attribution _:883049 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:883074 a rdf:Statement ; up:attribution _:883050 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:12 . _:883075 a rdf:Statement ; up:attribution _:883051 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:883076 a rdf:Statement ; up:attribution _:883052 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:883077 a rdf:Statement ; up:attribution _:883053 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:883078 a rdf:Statement ; up:attribution _:883054 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:698 . _:883079 a rdf:Statement ; up:attribution _:883055 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:883080 a rdf:Statement ; up:attribution _:883056 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:883081 a rdf:Statement ; up:attribution _:883057 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005730 . _:883082 a rdf:Statement ; up:attribution _:883058 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:883083 a rdf:Statement ; up:attribution _:883059 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008080 . _:883084 a rdf:Statement ; up:attribution _:883060 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0051391 . _:883085 a rdf:Statement ; up:attribution _:883061 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000154 . _:883086 a rdf:Statement ; up:attribution _:883062 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0042274 . _:883087 a rdf:Statement ; up:source unirule:MF_03211 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:883088 a rdf:Statement ; up:attribution _:883063 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:883089 a rdf:Statement ; up:source unirule:MF_03211 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:883090 a rdf:Statement ; up:attribution _:883064 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:883091 a rdf:Statement ; up:source unirule:MF_03211 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:883092 a rdf:Statement ; up:attribution _:883065 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:883093 a rdf:Statement ; up:source unirule:MF_03211 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:883094 a rdf:Statement ; up:attribution _:883066 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:883095 a rdf:Statement ; up:source unirule:MF_03211 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:883096 a rdf:Statement ; up:attribution _:883067 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03211 #Rule MF_03211 Created by:? on:2015-11-11 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03211 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03211a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_03211a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_03211a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_03211a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_03211a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_03211a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionP5391455 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5391457 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP53914MF_0321150 . ?templateMotifSequenceMatchRegionP5391455 faldo:begin ?templateMotifSequenceMatchBeginP5391456 . ?templateMotifSequenceMatchBeginP5391456 faldo:position ?templateMotifSequenceMatchBeginPositionP5391451 ; faldo:reference isoform:P53914-1 . ?templateMotifSequenceProfileAlignmentOperationP5391457 edam:has_input signature:MF_03211 ; rdf:type edam:operation_0300 . ?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0321161 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP53914MF_0321152 . ?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0321160 . ?targetMotifMatchRegionMatchBeginMF_0321160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0321153 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0321161 edam:has_input signature:MF_03211 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53914MF_0321150, 1, (STRLEN(?templateMotifCigarP53914MF_0321150) - STRLEN(REPLACE(?templateMotifCigarP53914MF_0321150, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP5391451) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53914MF_0321152, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321152) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53914MF_0321152, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321152) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) . BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0321153) - 1) AS ?thisPositionOn20) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53914MF_0321150, 1, (STRLEN(?templateMotifCigarP53914MF_0321150) - STRLEN(REPLACE(?templateMotifCigarP53914MF_0321150, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionP5391451) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53914MF_0321152, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321152) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53914MF_0321152, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321152) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) . BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0321153) - 1) AS ?thisPositionOn21) . BIND(?this AS ?pfs1t66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER (REGEX('GRGKSA[TAS][IVLM]G[IVLM]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) . BIND(URI(CONCAT(STR(?this), '#MF_03211a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP5391472 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5391474 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP53914MF_0321167 . ?templateMotifSequenceMatchRegionP5391472 faldo:begin ?templateMotifSequenceMatchBeginP5391473 . ?templateMotifSequenceMatchBeginP5391473 faldo:position ?templateMotifSequenceMatchBeginPositionP5391468 ; faldo:reference isoform:P53914-1 . ?templateMotifSequenceProfileAlignmentOperationP5391474 edam:has_input signature:MF_03211 ; rdf:type edam:operation_0300 . ?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0321178 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP53914MF_0321169 . ?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0321177 . ?targetMotifMatchRegionMatchBeginMF_0321177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0321170 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0321178 edam:has_input signature:MF_03211 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53914MF_0321167, 1, (STRLEN(?templateMotifCigarP53914MF_0321167) - STRLEN(REPLACE(?templateMotifCigarP53914MF_0321167, CONCAT('^(?:-*[^-]){', STR(((638 - ?templateMotifSequenceMatchBeginPositionP5391468) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53914MF_0321169, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321169) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53914MF_0321169, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321169) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) . BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0321170) - 1) AS ?thisPositionOn27) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53914MF_0321167, 1, (STRLEN(?templateMotifCigarP53914MF_0321167) - STRLEN(REPLACE(?templateMotifCigarP53914MF_0321167, CONCAT('^(?:-*[^-]){', STR(((640 - ?templateMotifSequenceMatchBeginPositionP5391468) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53914MF_0321169, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321169) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53914MF_0321169, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321169) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) . BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0321170) - 1) AS ?thisPositionOn28) . BIND(?this AS ?pfs1t83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER (REGEX('[IV]A[ATV]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) . BIND(URI(CONCAT(STR(?this), '#MF_03211a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP5391489 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5391491 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP53914MF_0321184 . ?templateMotifSequenceMatchRegionP5391489 faldo:begin ?templateMotifSequenceMatchBeginP5391490 . ?templateMotifSequenceMatchBeginP5391490 faldo:position ?templateMotifSequenceMatchBeginPositionP5391485 ; faldo:reference isoform:P53914-1 . ?templateMotifSequenceProfileAlignmentOperationP5391491 edam:has_input signature:MF_03211 ; rdf:type edam:operation_0300 . ?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0321195 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP53914MF_0321186 . ?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0321194 . ?targetMotifMatchRegionMatchBeginMF_0321194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0321187 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0321195 edam:has_input signature:MF_03211 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53914MF_0321184, 1, (STRLEN(?templateMotifCigarP53914MF_0321184) - STRLEN(REPLACE(?templateMotifCigarP53914MF_0321184, CONCAT('^(?:-*[^-]){', STR(((645 - ?templateMotifSequenceMatchBeginPositionP5391485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53914MF_0321186, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321186) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53914MF_0321186, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321186) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0321187) - 1) AS ?thisPositionOn34) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53914MF_0321184, 1, (STRLEN(?templateMotifCigarP53914MF_0321184) - STRLEN(REPLACE(?templateMotifCigarP53914MF_0321184, CONCAT('^(?:-*[^-]){', STR(((651 - ?templateMotifSequenceMatchBeginPositionP5391485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53914MF_0321186, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321186) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53914MF_0321186, 1, (STRLEN(?targetMotifMatchCigarP53914MF_0321186) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_0321186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) . BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0321187) - 1) AS ?thisPositionOn35) . BIND(?this AS ?pfs1t100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[MLA][GN]YG[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)))) . BIND(URI(CONCAT(STR(?this), '#MF_03211a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP53914106 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53914108 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP53914MF_03211101 . ?templateMotifSequenceMatchRegionP53914106 faldo:begin ?templateMotifSequenceMatchBeginP53914107 . ?templateMotifSequenceMatchBeginP53914107 faldo:position ?templateMotifSequenceMatchBeginPositionP53914102 ; faldo:reference isoform:P53914-1 . ?templateMotifSequenceProfileAlignmentOperationP53914108 edam:has_input signature:MF_03211 ; rdf:type edam:operation_0300 . ?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03211112 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP53914MF_03211103 . ?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03211111 . ?targetMotifMatchRegionMatchBeginMF_03211111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03211104 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03211112 edam:has_input signature:MF_03211 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53914MF_03211101, 1, (STRLEN(?templateMotifCigarP53914MF_03211101) - STRLEN(REPLACE(?templateMotifCigarP53914MF_03211101, CONCAT('^(?:-*[^-]){', STR(((475 - ?templateMotifSequenceMatchBeginPositionP53914102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53914MF_03211103, 1, (STRLEN(?targetMotifMatchCigarP53914MF_03211103) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_03211103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53914MF_03211103, 1, (STRLEN(?targetMotifMatchCigarP53914MF_03211103) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_03211103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_03211104) - 1) AS ?thisPositionOn41) . BIND(?thisPositionOn41 AS ?thisPositionOn42) . BIND(?this AS ?pfs1t115) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03211a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP53914121 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53914123 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP53914MF_03211116 . ?templateMotifSequenceMatchRegionP53914121 faldo:begin ?templateMotifSequenceMatchBeginP53914122 . ?templateMotifSequenceMatchBeginP53914122 faldo:position ?templateMotifSequenceMatchBeginPositionP53914117 ; faldo:reference isoform:P53914-1 . ?templateMotifSequenceProfileAlignmentOperationP53914123 edam:has_input signature:MF_03211 ; rdf:type edam:operation_0300 . ?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03211127 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP53914MF_03211118 . ?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03211126 . ?targetMotifMatchRegionMatchBeginMF_03211126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03211119 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03211127 edam:has_input signature:MF_03211 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53914MF_03211116, 1, (STRLEN(?templateMotifCigarP53914MF_03211116) - STRLEN(REPLACE(?templateMotifCigarP53914MF_03211116, CONCAT('^(?:-*[^-]){', STR(((739 - ?templateMotifSequenceMatchBeginPositionP53914117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53914MF_03211118, 1, (STRLEN(?targetMotifMatchCigarP53914MF_03211118) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_03211118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53914MF_03211118, 1, (STRLEN(?targetMotifMatchCigarP53914MF_03211118) - STRLEN(REPLACE(?targetMotifMatchCigarP53914MF_03211118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) . BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_03211119) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t130) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER (REGEX('[RKN]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03211a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:6237 . BIND(?this AS ?case12) . } OPTIONAL { ?this a up:Protein . VALUES ?supertaxon131 {taxon:7742 taxon:4751} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon131 . BIND(?this AS ?case13) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon132 {taxon:4751 taxon:7742} ?thisOrganism rdfs:subClassOf+ ?supertaxon132 . })) . BIND(?this AS ?case14) . } } """ . .