CONSTRUCT { _:902479 up:source unirule:MF_04048 . _:902480 up:fullName 'Endosome lysis protein' ; rdf:type up:Structured_Name . _:902481 up:source unirule:MF_04048 . _:902482 up:fullName 'Protease cofactor' ; rdf:type up:Structured_Name . _:902483 up:fullName 'pVI-C' ; rdf:type up:Structured_Name . _:902484 up:source unirule:MF_04048 . _:902485 up:source unirule:MF_04048 . _:902486 up:source unirule:MF_04048 . _:902487 up:source unirule:MF_04048 . _:902488 up:source unirule:MF_04048 . _:902489 up:source unirule:MF_04048 . _:902490 up:source unirule:MF_04048 . _:902491 up:source unirule:MF_04048 . _:902492 up:source unirule:MF_04048 . _:902493 up:source unirule:MF_04048 . _:902494 up:source unirule:MF_04048 . _:902495 up:source unirule:MF_04048 . _:902496 up:source unirule:MF_04048 . _:902497 up:source unirule:MF_04048 . _:902498 up:source unirule:MF_04048 . _:902499 up:source unirule:MF_04048 . _:902500 up:source unirule:MF_04048 . _:902501 up:source unirule:MF_04048 . _:902502 up:source unirule:MF_04048 . _:902503 up:source unirule:MF_04048 . _:902504 up:source unirule:MF_04048 . _:902505 up:source unirule:MF_04048 . _:902506 up:source unirule:MF_04048 . _:902507 up:source unirule:MF_04048 . _:902508 up:source unirule:MF_04048 . _:902509 up:source unirule:MF_04048 . _:902510 up:source unirule:MF_04048 . _:902511 up:source unirule:MF_04048 . _:902512 up:source unirule:MF_04048 . _:902513 up:source unirule:MF_04048 . _:902514 up:source unirule:MF_04048 . _:902515 up:source unirule:MF_04048 . _:902516 up:source unirule:MF_04048 . _:902517 up:source unirule:MF_04048 . _:902518 up:source unirule:MF_04048 . _:902519 up:source unirule:MF_04048 . _:902520 up:source unirule:MF_04048 . _:902521 up:source unirule:MF_04048 . _:902522 up:source unirule:MF_04048 . _:902523 up:source unirule:MF_04048 . _:902524 up:source unirule:MF_04048 . _:902525 up:source unirule:MF_04048 . _:902526 up:source unirule:MF_04048 . _:902527 up:source unirule:MF_04048 . _:902528 up:source unirule:MF_04048 . _:902529 up:source unirule:MF_04048 . _:902530 up:source unirule:MF_04048 . _:902531 up:source unirule:MF_04048 . _:902532 up:source unirule:MF_04048 . _:902533 up:source unirule:MF_04048 . _:902534 up:source unirule:MF_04048 . _:902535 up:source unirule:MF_04048 . _:902536 up:source unirule:MF_04048 . _:902537 up:source unirule:MF_04048 . _:902538 up:source unirule:MF_04048 . _:902539 up:source unirule:MF_04048 . _:902540 up:source unirule:MF_04048 . _:902541 up:source unirule:MF_04048 . _:902542 up:source unirule:MF_04048 . ?this up:annotation ?annotation4 , ?annotation5 , ?annotation6 , ?annotation7 , ?annotation8 , ?annotation9 , ?annotation10 , ?annotation13 , ?annotation15 , ?annotation16 , ?annotation17 , ?annotation18 , ?annotation19 , ?annotation20 , ?annotation21 ; up:classifiedWith GO:0019028 , GO:0019076 , GO:0030430 , GO:0039664 , GO:0042025 , GO:0046729 , GO:0075521 , keyword:1015 , keyword:1035 , keyword:1048 , keyword:1160 , keyword:1162 , keyword:1174 , keyword:1176 , keyword:1177 , keyword:1188 , keyword:118 , keyword:167 , keyword:426 , keyword:597 , keyword:832 , keyword:945 , keyword:946 ; up:component ?namedpart1 , ?namedpart2 ; up:recommendedName ?name0 . ?name0 up:fullName 'Pre-protein VI' ; up:shortName 'pVI' ; rdf:type up:Structured_Name . ?namedpart1 up:recommendedName _:902480 . ?namedpart2 up:alternativeName _:902483 ; up:recommendedName _:902482 . ?gene3 skos:prefLabel 'L3' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Pre-protein VI: During virus assembly, promotes hexon trimers nuclear import through nuclear pore complexes via an importin alpha/beta-dependent mechanism. By analogy to herpesviruses capsid assembly, might act as a chaperone to promote the formation of the icosahedral capsid.' . ?annotation5 a up:Function_Annotation ; rdfs:comment 'Endosome lysis protein: Structural component of the virion that provides increased stability to the particle shell through its interaction with the core-capsid bridging protein and the hexon-linking protein VIII. Fibers shedding during virus entry into host cell allows the endosome lysis protein to be exposed as a membrane-lytic peptide. Exhibits pH-independent membrane fragmentation activity and probably mediates viral rapid escape from host endosome via organellar membrane lysis. It is not clear if it then remains partially associated with the capsid and involved in the intracellular microtubule-dependent transport of capsid to the nucleus, or if it is lost during endosomal penetration.' . ?annotation6 a up:Function_Annotation ; rdfs:comment 'Protease cofactor: Cofactor that activates the viral protease. Binds to viral protease in a 1:1 ratio.' . ?annotation7 a up:Subunit_Annotation ; rdfs:comment '[Pre-protein VI]: Interacts with hexon protein; this interaction allows nuclear import of hexon trimers and possibly pre-capsid assembly. Interacts (via C-terminal NLS) with importin alpha/beta.' . ?annotation8 a up:Subunit_Annotation ; rdfs:comment '[Endosome lysis protein]: Interacts (via PPxY motif) with host NEDD4 ubiquitine ligase; this interaction might play a role in virus intracellular transport during entry. Part of a complex composed of the core-capsid bridging protein, the endosome lysis protein VI and the hexon-linking protein VIII; these interactions bridge the virus core to the capsid. Interacts with peripentonal hexons; this interaction stabilizes the capsid by gluing two peripentonal hexons together and joining them with an adjacent group-of-nine hexon.' . ?annotation9 a up:Subunit_Annotation ; rdfs:comment '[Protease cofactor]: Heterodimer with the viral protease; disulfide-linked. Interacts with the viral protease.' . ?annotation10 a up:Subcellular_Location_Annotation ; rdfs:comment 'Shuttles between host cytoplasm and nucleus' . ?annotation10li11 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation10li12 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation13 a up:Subcellular_Location_Annotation ; rdfs:comment 'Associates with the base of each peripentonal hexon on the capsid interior. Present in around 360 copies per virion' . ?annotation13li14 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation15 a up:Induction_Annotation ; rdfs:comment 'Expressed in the late phase of the viral replicative cycle.' . ?annotation16 a up:Domain_Annotation ; rdfs:comment 'N-terminal amphipathic alpha-helix domain is essential for the membrane lytic activity.' . ?annotation17 a up:Domain_Annotation ; rdfs:comment 'Late-budding domains (L domains) are short sequence motifs essential for viral particle release. They can occur individually or in close proximity within structural proteins. They interacts with sorting cellular proteins of the multivesicular body (MVB) pathway. Most of these proteins are class E vacuolar protein sorting factors belonging to ESCRT-I, ESCRT-II or ESCRT-III complexes. Minor capsid protein 6 contains one L domain: a PPXY motif which binds to the WW domains of HECT (homologous to E6-AP C-terminus) E3 ubiquitin ligases, like NEDD4. In adenoviruses, this motif seems to play a role in microtubule-dependent intracellular trafficking toward the nucleus during virus entry into host cell and in suppression of DAXX-mediated repression of the immediate early E1A promoter.' . ?annotation18 a up:PTM_Annotation ; rdfs:comment 'Ubiquitinated by Nedd4 following partial capsid disassembly; which might play a role in intracellular virus movement during entry.' . ?annotation19 a up:PTM_Annotation ; rdfs:comment 'Protease cofactor: Contains the major nuclear import and export signals. Proteolytically removed during virion maturation. The processing of the C-terminus turns the precursor into a mature viral structural protein and abrogates its ability to promote hexon import and act as a potential chaperone protein.' . ?annotation20 a up:Annotation ; rdfs:comment 'All late proteins expressed from the major late promoter are produced by alternative splicing and alternative polyadenylation of the same gene giving rise to non-overlapping ORFs. A leader sequence is present in the N-terminus of all these mRNAs and is recognized by the viral shutoff protein to provide expression although conventional translation via ribosome scanning from the cap has been shut off in the host cell.' . ?annotation21 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the adenoviridae protein VI family.' . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Pre-protein VI' . ?pfsb24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; rdf:type up:Propeptide_Annotation . ?pfsb30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Endosome lysis protein' . ?pfsb36 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Protease cofactor' . ?pfsb42 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; rdf:type up:Region_Annotation ; rdfs:comment 'Amphipathic alpha-helix essential for membrane lytic activity' . ?pfsb48 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; rdf:type up:Region_Annotation ; rdfs:comment 'Involved in endosomal membrane lysis' . ?pfsb54 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with hexon protein' . ?pfsb60 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfs64 up:annotation ?annotation65 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with hexon protein' . ?pfsb66 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; rdf:type up:Region_Annotation ; rdfs:comment 'Binds to importin alpha/beta, involved in hexon nuclear import' . ?pfsb72 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfs76 up:annotation ?annotation77 . ?annotation77 faldo:begin ?pfsb78 ; faldo:end ?pfse79 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Nuclear export signal' . ?pfsb78 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse79 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Nuclear export signal' . ?pfsb84 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfs88 up:annotation ?annotation89 . ?annotation89 faldo:begin ?pfsb90 ; faldo:end ?pfse91 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by viral protease' . ?pfsb90 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse91 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?pfs94 up:annotation ?annotation95 . ?annotation95 faldo:begin ?pfsb96 ; faldo:end ?pfse97 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by viral protease' . ?pfsb96 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?pfse97 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?pfs100 up:annotation ?annotation101 . ?annotation101 faldo:begin ?pfsb102 ; faldo:end ?pfse103 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Nuclear localization signal' . ?pfsb102 faldo:position ?thisPositionOn104 ; rdf:type faldo:ExactPosition . ?pfse103 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?pfs106 up:annotation ?annotation107 . ?annotation107 faldo:begin ?pfsb108 ; faldo:end ?pfse109 ; rdf:type up:Motif_Annotation ; rdfs:comment 'PPXY motif' . ?pfsb108 faldo:position ?thisPositionOn110 ; rdf:type faldo:ExactPosition . ?pfse109 faldo:position ?thisPositionOn111 ; rdf:type faldo:ExactPosition . ?pfs112 up:annotation ?annotation113 . ?annotation113 faldo:begin ?pfsb114 ; faldo:end ?pfse115 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Nuclear localization signal' . ?pfsb114 faldo:position ?thisPositionOn116 ; rdf:type faldo:ExactPosition . ?pfse115 faldo:position ?thisPositionOn117 ; rdf:type faldo:ExactPosition . ?pfs118 up:annotation ?annotation119 . ?annotation119 faldo:begin ?pfsb120 ; faldo:end ?pfse121 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by host' . ?pfsb120 faldo:position ?thisPositionOn122 ; rdf:type faldo:ExactPosition . ?pfse121 faldo:position ?thisPositionOn123 ; rdf:type faldo:ExactPosition . ?pfs124 up:annotation ?annotation125 . ?annotation125 faldo:begin ?pfsb126 ; faldo:end ?pfse127 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphothreonine; by host' . ?pfsb126 faldo:position ?thisPositionOn128 ; rdf:type faldo:ExactPosition . ?pfse127 faldo:position ?thisPositionOn129 ; rdf:type faldo:ExactPosition . ?pfs130 up:annotation ?annotation131 . ?annotation131 faldo:begin ?pfsb132 ; faldo:end ?pfse133 ; rdf:type up:Disulfide_Bond_Annotation ; rdfs:comment 'Interchain (with Adenovirus protease)' . ?pfsb132 faldo:position ?thisPositionOn134 ; rdf:type faldo:ExactPosition . ?pfse133 faldo:position ?thisPositionOn135 ; rdf:type faldo:ExactPosition . _:902543 a rdf:Statement ; up:attribution _:902479 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:902544 a rdf:Statement ; up:attribution _:902481 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart1 . _:902545 a rdf:Statement ; up:attribution _:902484 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart2 . _:902546 a rdf:Statement ; up:attribution _:902485 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:902547 a rdf:Statement ; up:attribution _:902486 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:902548 a rdf:Statement ; up:attribution _:902487 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:902549 a rdf:Statement ; up:attribution _:902488 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:902550 a rdf:Statement ; up:attribution _:902489 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:902551 a rdf:Statement ; up:attribution _:902490 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:902552 a rdf:Statement ; up:attribution _:902491 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:902553 a rdf:Statement ; up:attribution _:902492 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:902554 a rdf:Statement ; up:attribution _:902493 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:902555 a rdf:Statement ; up:attribution _:902494 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:902556 a rdf:Statement ; up:attribution _:902495 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:902557 a rdf:Statement ; up:attribution _:902496 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:902558 a rdf:Statement ; up:attribution _:902497 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:902559 a rdf:Statement ; up:attribution _:902498 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:902560 a rdf:Statement ; up:attribution _:902499 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:902561 a rdf:Statement ; up:attribution _:902500 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:902562 a rdf:Statement ; up:attribution _:902501 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:167 . _:902563 a rdf:Statement ; up:attribution _:902502 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1176 . _:902564 a rdf:Statement ; up:attribution _:902503 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1015 . _:902565 a rdf:Statement ; up:attribution _:902504 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1035 . _:902566 a rdf:Statement ; up:attribution _:902505 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1048 . _:902567 a rdf:Statement ; up:attribution _:902506 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:945 . _:902568 a rdf:Statement ; up:attribution _:902507 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:426 . _:902569 a rdf:Statement ; up:attribution _:902508 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1177 . _:902570 a rdf:Statement ; up:attribution _:902509 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:902571 a rdf:Statement ; up:attribution _:902510 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:832 . _:902572 a rdf:Statement ; up:attribution _:902511 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:118 . _:902573 a rdf:Statement ; up:attribution _:902512 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1162 . _:902574 a rdf:Statement ; up:attribution _:902513 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1174 . _:902575 a rdf:Statement ; up:attribution _:902514 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:946 . _:902576 a rdf:Statement ; up:attribution _:902515 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1160 . _:902577 a rdf:Statement ; up:attribution _:902516 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1188 . _:902578 a rdf:Statement ; up:attribution _:902517 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030430 . _:902579 a rdf:Statement ; up:attribution _:902518 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0042025 . _:902580 a rdf:Statement ; up:attribution _:902519 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019028 . _:902581 a rdf:Statement ; up:attribution _:902520 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0046729 . _:902582 a rdf:Statement ; up:attribution _:902521 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0039664 . _:902583 a rdf:Statement ; up:attribution _:902522 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0075521 . _:902584 a rdf:Statement ; up:attribution _:902523 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019076 . _:902585 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:902586 a rdf:Statement ; up:attribution _:902524 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:902587 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:902588 a rdf:Statement ; up:attribution _:902525 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:902589 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:902590 a rdf:Statement ; up:attribution _:902526 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:902591 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:902592 a rdf:Statement ; up:attribution _:902527 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:902593 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:902594 a rdf:Statement ; up:attribution _:902528 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:902595 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:902596 a rdf:Statement ; up:attribution _:902529 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:902597 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:902598 a rdf:Statement ; up:attribution _:902530 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:902599 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:902600 a rdf:Statement ; up:attribution _:902531 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:902601 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:902602 a rdf:Statement ; up:attribution _:902532 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:902603 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:902604 a rdf:Statement ; up:attribution _:902533 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:902605 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:902606 a rdf:Statement ; up:attribution _:902534 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:902607 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:902608 a rdf:Statement ; up:attribution _:902535 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:902609 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:902610 a rdf:Statement ; up:attribution _:902536 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:902611 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:902612 a rdf:Statement ; up:attribution _:902537 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:902613 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs106 ; rdf:predicate up:annotation ; rdf:object ?annotation107 . _:902614 a rdf:Statement ; up:attribution _:902538 ; rdf:subject ?pfs106 ; rdf:predicate up:annotation ; rdf:object ?annotation107 . _:902615 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs112 ; rdf:predicate up:annotation ; rdf:object ?annotation113 . _:902616 a rdf:Statement ; up:attribution _:902539 ; rdf:subject ?pfs112 ; rdf:predicate up:annotation ; rdf:object ?annotation113 . _:902617 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs118 ; rdf:predicate up:annotation ; rdf:object ?annotation119 . _:902618 a rdf:Statement ; up:attribution _:902540 ; rdf:subject ?pfs118 ; rdf:predicate up:annotation ; rdf:object ?annotation119 . _:902619 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs124 ; rdf:predicate up:annotation ; rdf:object ?annotation125 . _:902620 a rdf:Statement ; up:attribution _:902541 ; rdf:subject ?pfs124 ; rdf:predicate up:annotation ; rdf:object ?annotation125 . _:902621 a rdf:Statement ; up:source unirule:MF_04048 ; rdf:subject ?pfs130 ; rdf:predicate up:annotation ; rdf:object ?annotation131 . _:902622 a rdf:Statement ; up:attribution _:902542 ; rdf:subject ?pfs130 ; rdf:predicate up:annotation ; rdf:object ?annotation131 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04048 #Rule MF_04048 Created by:pmasson on:2017-02-23 Modified by:crivoire on:2021-10-15 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04048 . ?thisOrganism rdfs:subClassOf+ taxon:10508 . BIND(URI(CONCAT(STR(?this), '#MF_04048a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04048a1')) AS ?namedpart1) . BIND(URI(CONCAT(STR(?this), '#MF_04048a2')) AS ?namedpart2) . BIND(URI(CONCAT(STR(?this), '#MF_04048a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_04048a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_04048a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_04048a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_04048a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_04048a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_04048a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_04048a13')) AS ?annotation13) . BIND(URI(CONCAT(STR(?this), '#MF_04048a15')) AS ?annotation15) . BIND(URI(CONCAT(STR(?this), '#MF_04048a16')) AS ?annotation16) . BIND(URI(CONCAT(STR(?this), '#MF_04048a17')) AS ?annotation17) . BIND(URI(CONCAT(STR(?this), '#MF_04048a18')) AS ?annotation18) . BIND(URI(CONCAT(STR(?this), '#MF_04048a19')) AS ?annotation19) . BIND(URI(CONCAT(STR(?this), '#MF_04048a20')) AS ?annotation20) . BIND(URI(CONCAT(STR(?this), '#MF_04048a21')) AS ?annotation21) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionP24937141 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937143 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048136 . ?templateMotifSequenceMatchRegionP24937141 faldo:begin ?templateMotifSequenceMatchBeginP24937142 . ?templateMotifSequenceMatchBeginP24937142 faldo:position ?templateMotifSequenceMatchBeginPositionP24937137 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937143 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048147 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048138 . ?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048146 . ?targetMotifMatchRegionMatchBeginMF_04048146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048139 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048147 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn26) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn27) . BIND(?this AS ?pfs1t148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) . FILTER ((BOUND(?thisPositionOn26) && BOUND(?thisPositionOn27))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP24937154 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937156 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048149 . ?templateMotifSequenceMatchRegionP24937154 faldo:begin ?templateMotifSequenceMatchBeginP24937155 . ?templateMotifSequenceMatchBeginP24937155 faldo:position ?templateMotifSequenceMatchBeginPositionP24937150 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937156 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048160 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048151 . ?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048159 . ?targetMotifMatchRegionMatchBeginMF_04048159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048152 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048160 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn32) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048149, 1, (STRLEN(?templateMotifCigarP24937MF_04048149) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048149, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP24937150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048151, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048151) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048151, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048151) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_04048152) - 1) AS ?thisPositionOn33) . BIND(?this AS ?pfs1t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) . FILTER ((BOUND(?thisPositionOn32) && BOUND(?thisPositionOn33))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP24937169 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937171 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048164 . ?templateMotifSequenceMatchRegionP24937169 faldo:begin ?templateMotifSequenceMatchBeginP24937170 . ?templateMotifSequenceMatchBeginP24937170 faldo:position ?templateMotifSequenceMatchBeginPositionP24937165 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937171 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048175 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048166 . ?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048174 . ?targetMotifMatchRegionMatchBeginMF_04048174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048167 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048175 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048164, 1, (STRLEN(?templateMotifCigarP24937MF_04048164) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048164, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP24937165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048166, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048166) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048166, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048166) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) . BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_04048167) - 1) AS ?thisPositionOn38) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048164, 1, (STRLEN(?templateMotifCigarP24937MF_04048164) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048164, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP24937165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048166, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048166) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048166, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048166) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) . BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_04048167) - 1) AS ?thisPositionOn39) . BIND(?this AS ?pfs1t180) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) . FILTER ((BOUND(?thisPositionOn38) && BOUND(?thisPositionOn39))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP24937186 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937188 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048181 . ?templateMotifSequenceMatchRegionP24937186 faldo:begin ?templateMotifSequenceMatchBeginP24937187 . ?templateMotifSequenceMatchBeginP24937187 faldo:position ?templateMotifSequenceMatchBeginPositionP24937182 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937188 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048192 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048183 . ?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048191 . ?targetMotifMatchRegionMatchBeginMF_04048191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048184 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048192 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048181, 1, (STRLEN(?templateMotifCigarP24937MF_04048181) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048181, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP24937182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048183, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048183) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048183, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048183) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) . BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_04048184) - 1) AS ?thisPositionOn44) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048181, 1, (STRLEN(?templateMotifCigarP24937MF_04048181) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048181, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP24937182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048183, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048183) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048183, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048183) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_04048184) - 1) AS ?thisPositionOn45) . BIND(?this AS ?pfs1t197) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) . FILTER ((BOUND(?thisPositionOn44) && BOUND(?thisPositionOn45))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP24937203 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937205 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048198 . ?templateMotifSequenceMatchRegionP24937203 faldo:begin ?templateMotifSequenceMatchBeginP24937204 . ?templateMotifSequenceMatchBeginP24937204 faldo:position ?templateMotifSequenceMatchBeginPositionP24937199 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937205 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048209 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048200 . ?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048208 . ?targetMotifMatchRegionMatchBeginMF_04048208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048201 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048209 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048198, 1, (STRLEN(?templateMotifCigarP24937MF_04048198) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048198, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP24937199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048200, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048200) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048200, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048200) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_04048201) - 1) AS ?thisPositionOn50) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048198, 1, (STRLEN(?templateMotifCigarP24937MF_04048198) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048198, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP24937199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048200, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048200) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048200, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048200) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) . BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_04048201) - 1) AS ?thisPositionOn51) . BIND(?this AS ?pfs1t214) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) . FILTER ((BOUND(?thisPositionOn50) && BOUND(?thisPositionOn51))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionP24937220 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937222 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048215 . ?templateMotifSequenceMatchRegionP24937220 faldo:begin ?templateMotifSequenceMatchBeginP24937221 . ?templateMotifSequenceMatchBeginP24937221 faldo:position ?templateMotifSequenceMatchBeginPositionP24937216 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937222 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048226 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048217 . ?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048225 . ?targetMotifMatchRegionMatchBeginMF_04048225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048218 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048226 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048215, 1, (STRLEN(?templateMotifCigarP24937MF_04048215) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048215, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP24937216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048217, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048217) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048217, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048217) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) . BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_04048218) - 1) AS ?thisPositionOn56) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048215, 1, (STRLEN(?templateMotifCigarP24937MF_04048215) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048215, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP24937216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048217, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048217) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048217, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048217) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) . BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_04048218) - 1) AS ?thisPositionOn57) . BIND(?this AS ?pfs1t231) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse55) . FILTER ((BOUND(?thisPositionOn56) && BOUND(?thisPositionOn57))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionP24937237 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937239 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048232 . ?templateMotifSequenceMatchRegionP24937237 faldo:begin ?templateMotifSequenceMatchBeginP24937238 . ?templateMotifSequenceMatchBeginP24937238 faldo:position ?templateMotifSequenceMatchBeginPositionP24937233 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937239 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048243 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048234 . ?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048242 . ?targetMotifMatchRegionMatchBeginMF_04048242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048235 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048243 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048232, 1, (STRLEN(?templateMotifCigarP24937MF_04048232) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048232, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP24937233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048234, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048234) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048234, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048234) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) . BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_04048235) - 1) AS ?thisPositionOn62) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048232, 1, (STRLEN(?templateMotifCigarP24937MF_04048232) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048232, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP24937233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048234, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048234) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048234, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048234) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) . BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_04048235) - 1) AS ?thisPositionOn63) . BIND(?this AS ?pfs1t248) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse61) . FILTER ((BOUND(?thisPositionOn62) && BOUND(?thisPositionOn63))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionP24937254 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937256 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048249 . ?templateMotifSequenceMatchRegionP24937254 faldo:begin ?templateMotifSequenceMatchBeginP24937255 . ?templateMotifSequenceMatchBeginP24937255 faldo:position ?templateMotifSequenceMatchBeginPositionP24937250 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937256 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048260 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048251 . ?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048259 . ?targetMotifMatchRegionMatchBeginMF_04048259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048252 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048260 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048249, 1, (STRLEN(?templateMotifCigarP24937MF_04048249) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048249, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP24937250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048251, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048251) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048251, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048251) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) . BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_04048252) - 1) AS ?thisPositionOn68) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048249, 1, (STRLEN(?templateMotifCigarP24937MF_04048249) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048249, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP24937250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048251, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048251) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048251, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048251) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) . BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_04048252) - 1) AS ?thisPositionOn69) . BIND(?this AS ?pfs1t265) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse67) . FILTER ((BOUND(?thisPositionOn68) && BOUND(?thisPositionOn69))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a65')) AS ?annotation65) . BIND(?this AS ?pfs64) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionP24937271 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937273 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048266 . ?templateMotifSequenceMatchRegionP24937271 faldo:begin ?templateMotifSequenceMatchBeginP24937272 . ?templateMotifSequenceMatchBeginP24937272 faldo:position ?templateMotifSequenceMatchBeginPositionP24937267 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937273 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048277 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048268 . ?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048276 . ?targetMotifMatchRegionMatchBeginMF_04048276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048269 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048277 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048266, 1, (STRLEN(?templateMotifCigarP24937MF_04048266) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048266, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP24937267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048268, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048268) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048268, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048268) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) . BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_04048269) - 1) AS ?thisPositionOn74) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048266, 1, (STRLEN(?templateMotifCigarP24937MF_04048266) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048266, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP24937267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048268, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048268) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048268, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048268) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) . BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_04048269) - 1) AS ?thisPositionOn75) . BIND(?this AS ?pfs1t282) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse73) . FILTER ((BOUND(?thisPositionOn74) && BOUND(?thisPositionOn75))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch287 faldo:location ?templateMotifSequenceMatchRegionP24937288 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937290 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048283 . ?templateMotifSequenceMatchRegionP24937288 faldo:begin ?templateMotifSequenceMatchBeginP24937289 . ?templateMotifSequenceMatchBeginP24937289 faldo:position ?templateMotifSequenceMatchBeginPositionP24937284 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937290 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch291 faldo:location ?targetMotifMatchRegionMatch292 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048294 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048285 . ?targetMotifMatchRegionMatch292 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048293 . ?targetMotifMatchRegionMatchBeginMF_04048293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048286 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048294 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048283, 1, (STRLEN(?templateMotifCigarP24937MF_04048283) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048283, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP24937284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048285, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048285) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048285, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048285) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) . BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_04048286) - 1) AS ?thisPositionOn80) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048283, 1, (STRLEN(?templateMotifCigarP24937MF_04048283) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048283, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP24937284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048285, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048285) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048285, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048285) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) . BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_04048286) - 1) AS ?thisPositionOn81) . BIND(?this AS ?pfs1t299) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) . FILTER ((BOUND(?thisPositionOn80) && BOUND(?thisPositionOn81))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a77')) AS ?annotation77) . BIND(?this AS ?pfs76) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch304 faldo:location ?templateMotifSequenceMatchRegionP24937305 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937307 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048300 . ?templateMotifSequenceMatchRegionP24937305 faldo:begin ?templateMotifSequenceMatchBeginP24937306 . ?templateMotifSequenceMatchBeginP24937306 faldo:position ?templateMotifSequenceMatchBeginPositionP24937301 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937307 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch308 faldo:location ?targetMotifMatchRegionMatch309 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048311 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048302 . ?targetMotifMatchRegionMatch309 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048310 . ?targetMotifMatchRegionMatchBeginMF_04048310 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048303 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048311 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048300, 1, (STRLEN(?templateMotifCigarP24937MF_04048300) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048300, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP24937301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048302, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048302) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048302, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048302) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) . BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_04048303) - 1) AS ?thisPositionOn86) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048300, 1, (STRLEN(?templateMotifCigarP24937MF_04048300) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048300, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionP24937301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048302, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048302) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048302, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048302) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) . BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_04048303) - 1) AS ?thisPositionOn87) . BIND(?this AS ?pfs1t316) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) . FILTER ((BOUND(?thisPositionOn86) && BOUND(?thisPositionOn87))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch321 faldo:location ?templateMotifSequenceMatchRegionP24937322 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937324 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048317 . ?templateMotifSequenceMatchRegionP24937322 faldo:begin ?templateMotifSequenceMatchBeginP24937323 . ?templateMotifSequenceMatchBeginP24937323 faldo:position ?templateMotifSequenceMatchBeginPositionP24937318 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937324 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch325 faldo:location ?targetMotifMatchRegionMatch326 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048328 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048319 . ?targetMotifMatchRegionMatch326 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048327 . ?targetMotifMatchRegionMatchBeginMF_04048327 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048320 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048328 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048317, 1, (STRLEN(?templateMotifCigarP24937MF_04048317) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048317, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP24937318) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1329) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048319, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048319) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048319, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048319) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), '')))), '[^-]', ''))) AS ?step2330) . BIND(((?step2330 + ?targetMotifMatchRegionMatchBeginPositionMF_04048320) - 1) AS ?thisPositionOn92) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048317, 1, (STRLEN(?templateMotifCigarP24937MF_04048317) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048317, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP24937318) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1331) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048319, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048319) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048319, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048319) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), '')))), '[^-]', ''))) AS ?step2332) . BIND(((?step2332 + ?targetMotifMatchRegionMatchBeginPositionMF_04048320) - 1) AS ?thisPositionOn93) . BIND(?this AS ?pfs1t333) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) . FILTER ((BOUND(?thisPositionOn92) && BOUND(?thisPositionOn93))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a89')) AS ?annotation89) . BIND(?this AS ?pfs88) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch338 faldo:location ?templateMotifSequenceMatchRegionP24937339 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937341 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048334 . ?templateMotifSequenceMatchRegionP24937339 faldo:begin ?templateMotifSequenceMatchBeginP24937340 . ?templateMotifSequenceMatchBeginP24937340 faldo:position ?templateMotifSequenceMatchBeginPositionP24937335 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937341 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch342 faldo:location ?targetMotifMatchRegionMatch343 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048345 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048336 . ?targetMotifMatchRegionMatch343 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048344 . ?targetMotifMatchRegionMatchBeginMF_04048344 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048337 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048345 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048334, 1, (STRLEN(?templateMotifCigarP24937MF_04048334) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048334, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP24937335) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1346) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048336, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048336) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048336, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048336) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), '')))), '[^-]', ''))) AS ?step2347) . BIND(((?step2347 + ?targetMotifMatchRegionMatchBeginPositionMF_04048337) - 1) AS ?thisPositionOn98) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048334, 1, (STRLEN(?templateMotifCigarP24937MF_04048334) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048334, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP24937335) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1348) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048336, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048336) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048336, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048336) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), '')))), '[^-]', ''))) AS ?step2349) . BIND(((?step2349 + ?targetMotifMatchRegionMatchBeginPositionMF_04048337) - 1) AS ?thisPositionOn99) . BIND(?this AS ?pfs1t350) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse97) . FILTER ((BOUND(?thisPositionOn98) && BOUND(?thisPositionOn99))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a95')) AS ?annotation95) . BIND(?this AS ?pfs94) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch355 faldo:location ?templateMotifSequenceMatchRegionP24937356 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937358 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048351 . ?templateMotifSequenceMatchRegionP24937356 faldo:begin ?templateMotifSequenceMatchBeginP24937357 . ?templateMotifSequenceMatchBeginP24937357 faldo:position ?templateMotifSequenceMatchBeginPositionP24937352 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937358 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch359 faldo:location ?targetMotifMatchRegionMatch360 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048362 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048353 . ?targetMotifMatchRegionMatch360 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048361 . ?targetMotifMatchRegionMatchBeginMF_04048361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048354 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048362 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048351, 1, (STRLEN(?templateMotifCigarP24937MF_04048351) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048351, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP24937352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048353, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048353) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048353, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048353) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) . BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_04048354) - 1) AS ?thisPositionOn104) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048351, 1, (STRLEN(?templateMotifCigarP24937MF_04048351) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048351, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP24937352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1365) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048353, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048353) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048353, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048353) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), '')))), '[^-]', ''))) AS ?step2366) . BIND(((?step2366 + ?targetMotifMatchRegionMatchBeginPositionMF_04048354) - 1) AS ?thisPositionOn105) . BIND(?this AS ?pfs1t367) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfsb102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfse103) . FILTER (REGEX('[KR][KR][ARNDCQEGHILKMFPSTWYVBZJUOX][KR][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn104, (?thisPositionOn105 - ?thisPositionOn104)))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a101')) AS ?annotation101) . BIND(?this AS ?pfs100) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch372 faldo:location ?templateMotifSequenceMatchRegionP24937373 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937375 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048368 . ?templateMotifSequenceMatchRegionP24937373 faldo:begin ?templateMotifSequenceMatchBeginP24937374 . ?templateMotifSequenceMatchBeginP24937374 faldo:position ?templateMotifSequenceMatchBeginPositionP24937369 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937375 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch376 faldo:location ?targetMotifMatchRegionMatch377 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048379 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048370 . ?targetMotifMatchRegionMatch377 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048378 . ?targetMotifMatchRegionMatchBeginMF_04048378 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048371 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048379 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048368, 1, (STRLEN(?templateMotifCigarP24937MF_04048368) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048368, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP24937369) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1380) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048370, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048370) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048370, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048370) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), '')))), '[^-]', ''))) AS ?step2381) . BIND(((?step2381 + ?targetMotifMatchRegionMatchBeginPositionMF_04048371) - 1) AS ?thisPositionOn110) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048368, 1, (STRLEN(?templateMotifCigarP24937MF_04048368) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048368, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP24937369) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1382) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048370, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048370) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1382), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048370, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048370) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1382), '}'), '')))), '[^-]', ''))) AS ?step2383) . BIND(((?step2383 + ?targetMotifMatchRegionMatchBeginPositionMF_04048371) - 1) AS ?thisPositionOn111) . BIND(?this AS ?pfs1t384) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb108) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse109) . FILTER (REGEX('PP[ARNDCQEGHILKMFPSTWYVBZJUOX]Y', SUBSTR(?thisSequenceValue, ?thisPositionOn110, (?thisPositionOn111 - ?thisPositionOn110)))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a107')) AS ?annotation107) . BIND(?this AS ?pfs106) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch389 faldo:location ?templateMotifSequenceMatchRegionP24937390 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937392 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048385 . ?templateMotifSequenceMatchRegionP24937390 faldo:begin ?templateMotifSequenceMatchBeginP24937391 . ?templateMotifSequenceMatchBeginP24937391 faldo:position ?templateMotifSequenceMatchBeginPositionP24937386 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937392 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch393 faldo:location ?targetMotifMatchRegionMatch394 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048396 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048387 . ?targetMotifMatchRegionMatch394 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048395 . ?targetMotifMatchRegionMatchBeginMF_04048395 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048388 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048396 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048385, 1, (STRLEN(?templateMotifCigarP24937MF_04048385) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048385, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionP24937386) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1397) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048387, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048387) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048387, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048387) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), '')))), '[^-]', ''))) AS ?step2398) . BIND(((?step2398 + ?targetMotifMatchRegionMatchBeginPositionMF_04048388) - 1) AS ?thisPositionOn116) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048385, 1, (STRLEN(?templateMotifCigarP24937MF_04048385) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048385, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP24937386) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1399) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048387, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048387) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048387, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048387) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), '')))), '[^-]', ''))) AS ?step2400) . BIND(((?step2400 + ?targetMotifMatchRegionMatchBeginPositionMF_04048388) - 1) AS ?thisPositionOn117) . BIND(?this AS ?pfs1t401) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb114) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse115) . FILTER (REGEX('[KR][KR][KR][KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn116, (?thisPositionOn117 - ?thisPositionOn116)))) . BIND(URI(CONCAT(STR(?this), '#MF_04048a113')) AS ?annotation113) . BIND(?this AS ?pfs112) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch406 faldo:location ?templateMotifSequenceMatchRegionP24937407 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937409 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048402 . ?templateMotifSequenceMatchRegionP24937407 faldo:begin ?templateMotifSequenceMatchBeginP24937408 . ?templateMotifSequenceMatchBeginP24937408 faldo:position ?templateMotifSequenceMatchBeginPositionP24937403 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937409 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch410 faldo:location ?targetMotifMatchRegionMatch411 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048413 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048404 . ?targetMotifMatchRegionMatch411 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048412 . ?targetMotifMatchRegionMatchBeginMF_04048412 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048405 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048413 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048402, 1, (STRLEN(?templateMotifCigarP24937MF_04048402) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048402, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP24937403) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1414) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048404, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048404) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048404, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048404, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048404) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048404, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), '')))), '[^-]', ''))) AS ?step2415) . BIND(((?step2415 + ?targetMotifMatchRegionMatchBeginPositionMF_04048405) - 1) AS ?thisPositionOn122) . BIND(?thisPositionOn122 AS ?thisPositionOn123) . BIND(?this AS ?pfs1t416) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb120) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse121) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn122, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04048a119')) AS ?annotation119) . BIND(?this AS ?pfs118) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch421 faldo:location ?templateMotifSequenceMatchRegionP24937422 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937424 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048417 . ?templateMotifSequenceMatchRegionP24937422 faldo:begin ?templateMotifSequenceMatchBeginP24937423 . ?templateMotifSequenceMatchBeginP24937423 faldo:position ?templateMotifSequenceMatchBeginPositionP24937418 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937424 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch425 faldo:location ?targetMotifMatchRegionMatch426 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048428 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048419 . ?targetMotifMatchRegionMatch426 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048427 . ?targetMotifMatchRegionMatchBeginMF_04048427 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048420 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048428 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048417, 1, (STRLEN(?templateMotifCigarP24937MF_04048417) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048417, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP24937418) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1429) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048419, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048419) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048419, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048419) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), '')))), '[^-]', ''))) AS ?step2430) . BIND(((?step2430 + ?targetMotifMatchRegionMatchBeginPositionMF_04048420) - 1) AS ?thisPositionOn128) . BIND(?thisPositionOn128 AS ?thisPositionOn129) . BIND(?this AS ?pfs1t431) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb126) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse127) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn128, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_04048a125')) AS ?annotation125) . BIND(?this AS ?pfs124) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch436 faldo:location ?templateMotifSequenceMatchRegionP24937437 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937439 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24937MF_04048432 . ?templateMotifSequenceMatchRegionP24937437 faldo:begin ?templateMotifSequenceMatchBeginP24937438 . ?templateMotifSequenceMatchBeginP24937438 faldo:position ?templateMotifSequenceMatchBeginPositionP24937433 ; faldo:reference isoform:P24937-1 . ?templateMotifSequenceProfileAlignmentOperationP24937439 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . ?targetMotifMatch440 faldo:location ?targetMotifMatchRegionMatch441 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048443 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24937MF_04048434 . ?targetMotifMatchRegionMatch441 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048442 . ?targetMotifMatchRegionMatchBeginMF_04048442 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048435 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04048443 edam:has_input signature:MF_04048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048432, 1, (STRLEN(?templateMotifCigarP24937MF_04048432) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048432, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP24937433) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1444) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048434, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048434) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1444), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048434, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048434) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1444), '}'), '')))), '[^-]', ''))) AS ?step2445) . BIND(((?step2445 + ?targetMotifMatchRegionMatchBeginPositionMF_04048435) - 1) AS ?thisPositionOn134) . BIND(?thisPositionOn134 AS ?thisPositionOn135) . BIND(?this AS ?pfs1t446) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb132) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse133) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn134, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_04048a131')) AS ?annotation131) . BIND(?this AS ?pfs130) . } }