CONSTRUCT { _:953368 up:source unirule:MF_04101 . _:953369 up:source unirule:MF_04101 . _:953370 up:source unirule:MF_04101 . _:953371 up:source unirule:MF_04101 . _:953372 up:source unirule:MF_04101 . _:953373 up:source unirule:MF_04101 . _:953374 up:source unirule:MF_04101 . _:953375 up:source unirule:MF_04101 . _:953376 up:source unirule:MF_04101 . _:953377 up:source unirule:MF_04101 . _:953378 up:source unirule:MF_04101 . _:953379 up:source unirule:MF_04101 . _:953380 up:source unirule:MF_04101 . _:953381 up:source unirule:MF_04101 . _:953382 up:source unirule:MF_04101 . _:953383 up:source unirule:MF_04101 . _:953384 up:source unirule:MF_04101 . _:953385 up:source unirule:MF_04101 . _:953386 up:source unirule:MF_04101 . _:953387 up:source unirule:MF_04101 . _:953388 up:source unirule:MF_04101 . _:953389 up:source unirule:MF_04101 . _:953390 up:source unirule:MF_04101 . _:953391 up:source unirule:MF_04101 . _:953392 up:source unirule:MF_04101 . _:953393 up:source unirule:MF_04101 . _:953394 up:source unirule:MF_04101 . _:953395 up:source unirule:MF_04101 . _:953396 up:source unirule:MF_04101 . _:953397 up:source unirule:MF_04101 . _:953398 up:source unirule:MF_04101 . _:953399 up:source unirule:MF_04101 . _:953400 up:source unirule:MF_04101 . _:953401 up:source unirule:MF_04101 . _:953402 up:source unirule:MF_04101 . _:953403 up:source unirule:MF_04101 . ?this up:annotation ?annotation1 , ?annotation2 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0000166 , GO:0003677 , GO:0003887 , GO:0008408 , keyword:1194 , keyword:235 , keyword:238 , keyword:239 , keyword:269 , keyword:378 , keyword:460 , keyword:479 , keyword:511 , keyword:540 , keyword:548 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.7' , '3.1.11.-' ; up:fullName 'DNA-directed DNA polymerase' ; rdf:type up:Structured_Name . ?annotation1 a up:Function_Annotation ; rdfs:comment "Replicates viral genomic DNA. This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction." . ?annotation2 up:activity ?activity3 ; rdf:type up:Catalytic_Activity_Annotation . ?activity3 up:catalyticActivity <http://rdf.rhea-db.org/22508>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.7>. ?annotation4 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the DNA polymerase type-A family.' . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; rdf:type up:Region_Annotation ; rdfs:comment "3'-5'exonuclease" . ?pfsb8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; rdf:type up:Region_Annotation ; rdfs:comment 'Polymerase' . ?pfsb14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:18420 . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:18420 . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:18420 . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf chebi:18420 . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf chebi:18420 . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; up:ligand ?ligand57 ; rdf:type up:Binding_Site_Annotation . ?pfsb55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?ligand57 rdfs:subClassOf chebi:18420 . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; up:ligand ?ligand64 ; rdf:type up:Binding_Site_Annotation . ?pfsb62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?ligand64 rdfs:subClassOf chebi:18420 . ?pfs67 up:annotation ?annotation68 . ?annotation68 faldo:begin ?pfsb69 ; faldo:end ?pfse70 ; up:ligand ?ligand71 ; rdf:type up:Binding_Site_Annotation . ?pfsb69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?ligand71 rdfs:subClassOf chebi:18420 . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; up:ligand ?ligand78 ; rdf:type up:Binding_Site_Annotation . ?pfsb76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?ligand78 rdfs:subClassOf chebi:18420 . ?pfs81 up:annotation ?annotation82 . ?annotation82 faldo:begin ?pfsb83 ; faldo:end ?pfse84 ; up:ligand ?ligand85 ; rdf:type up:Binding_Site_Annotation . ?pfsb83 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfse84 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?ligand85 rdfs:subClassOf ?molecule86 . ?molecule86 rdfs:label 'substrate' . ?pfs89 up:annotation ?annotation90 . ?annotation90 faldo:begin ?pfsb91 ; faldo:end ?pfse92 ; up:ligand ?ligand93 ; rdf:type up:Binding_Site_Annotation . ?pfsb91 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?pfse92 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?ligand93 rdfs:subClassOf ?molecule94 . ?molecule94 rdfs:label 'substrate' . ?pfs97 up:annotation ?annotation98 . ?annotation98 faldo:begin ?pfsb99 ; faldo:end ?pfse100 ; up:ligand ?ligand101 ; rdf:type up:Binding_Site_Annotation . ?pfsb99 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?pfse100 faldo:position ?thisPositionOn104 ; rdf:type faldo:ExactPosition . ?ligand101 rdfs:subClassOf ?molecule102 . ?molecule102 rdfs:label 'substrate' . ?pfs105 up:annotation ?annotation106 . ?annotation106 faldo:begin ?pfsb107 ; faldo:end ?pfse108 ; up:ligand ?ligand109 ; rdf:type up:Binding_Site_Annotation . ?pfsb107 faldo:position ?thisPositionOn111 ; rdf:type faldo:ExactPosition . ?pfse108 faldo:position ?thisPositionOn112 ; rdf:type faldo:ExactPosition . ?ligand109 rdfs:subClassOf ?molecule110 . ?molecule110 rdfs:label 'substrate' . _:953404 a rdf:Statement ; up:attribution _:953368 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:953405 a rdf:Statement ; up:attribution _:953369 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:953406 a rdf:Statement ; up:attribution _:953370 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:953407 a rdf:Statement ; up:attribution _:953371 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:953408 a rdf:Statement ; up:attribution _:953372 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:953409 a rdf:Statement ; up:attribution _:953373 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:235 . _:953410 a rdf:Statement ; up:attribution _:953374 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:953411 a rdf:Statement ; up:attribution _:953375 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:239 . _:953412 a rdf:Statement ; up:attribution _:953376 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:269 . _:953413 a rdf:Statement ; up:attribution _:953377 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:953414 a rdf:Statement ; up:attribution _:953378 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:953415 a rdf:Statement ; up:attribution _:953379 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:953416 a rdf:Statement ; up:attribution _:953380 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:511 . _:953417 a rdf:Statement ; up:attribution _:953381 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:953418 a rdf:Statement ; up:attribution _:953382 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:953419 a rdf:Statement ; up:attribution _:953383 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:953420 a rdf:Statement ; up:attribution _:953384 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1194 . _:953421 a rdf:Statement ; up:attribution _:953385 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008408 . _:953422 a rdf:Statement ; up:attribution _:953386 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003677 . _:953423 a rdf:Statement ; up:attribution _:953387 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003887 . _:953424 a rdf:Statement ; up:attribution _:953388 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000166 . _:953425 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:953426 a rdf:Statement ; up:attribution _:953389 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:953427 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:953428 a rdf:Statement ; up:attribution _:953390 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:953429 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:953430 a rdf:Statement ; up:attribution _:953391 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:953431 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:953432 a rdf:Statement ; up:attribution _:953392 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:953433 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:953434 a rdf:Statement ; up:attribution _:953393 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:953435 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:953436 a rdf:Statement ; up:attribution _:953394 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:953437 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:953438 a rdf:Statement ; up:attribution _:953395 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:953439 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:953440 a rdf:Statement ; up:attribution _:953396 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:953441 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:953442 a rdf:Statement ; up:attribution _:953397 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:953443 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:953444 a rdf:Statement ; up:attribution _:953398 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:953445 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:953446 a rdf:Statement ; up:attribution _:953399 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:953447 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:953448 a rdf:Statement ; up:attribution _:953400 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:953449 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs89 ; rdf:predicate up:annotation ; rdf:object ?annotation90 . _:953450 a rdf:Statement ; up:attribution _:953401 ; rdf:subject ?pfs89 ; rdf:predicate up:annotation ; rdf:object ?annotation90 . _:953451 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs97 ; rdf:predicate up:annotation ; rdf:object ?annotation98 . _:953452 a rdf:Statement ; up:attribution _:953402 ; rdf:subject ?pfs97 ; rdf:predicate up:annotation ; rdf:object ?annotation98 . _:953453 a rdf:Statement ; up:source unirule:MF_04101 ; rdf:subject ?pfs105 ; rdf:predicate up:annotation ; rdf:object ?annotation106 . _:953454 a rdf:Statement ; up:attribution _:953403 ; rdf:subject ?pfs105 ; rdf:predicate up:annotation ; rdf:object ?annotation106 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04101 #Rule MF_04101 Created by:? on:2016-06-28 Modified by:Edouard de Castro on:2024-09-02 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04101 . ?thisOrganism rdfs:subClassOf+ taxon:2731619 . BIND(URI(CONCAT(STR(?this), '#MF_04101a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04101a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_04101a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_04101a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_04101a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP00581118 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581120 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101113 . ?templateMotifSequenceMatchRegionP00581118 faldo:begin ?templateMotifSequenceMatchBeginP00581119 . ?templateMotifSequenceMatchBeginP00581119 faldo:position ?templateMotifSequenceMatchBeginPositionP00581114 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581120 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101124 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101115 . ?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101123 . ?targetMotifMatchRegionMatchBeginMF_04101123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101116 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101124 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101113, 1, (STRLEN(?templateMotifCigarP00581MF_04101113) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101113, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP00581114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101115, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101115) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101115, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101115) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) . BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_04101116) - 1) AS ?thisPositionOn10) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101113, 1, (STRLEN(?templateMotifCigarP00581MF_04101113) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101113, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP00581114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101115, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101115) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101115, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101115) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) . BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_04101116) - 1) AS ?thisPositionOn11) . BIND(?this AS ?pfs1t129) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) . FILTER ((BOUND(?thisPositionOn10) && BOUND(?thisPositionOn11))) . BIND(URI(CONCAT(STR(?this), '#MF_04101a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP00581135 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581137 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101130 . ?templateMotifSequenceMatchRegionP00581135 faldo:begin ?templateMotifSequenceMatchBeginP00581136 . ?templateMotifSequenceMatchBeginP00581136 faldo:position ?templateMotifSequenceMatchBeginPositionP00581131 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581137 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101132 . ?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101140 . ?targetMotifMatchRegionMatchBeginMF_04101140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101141 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101130, 1, (STRLEN(?templateMotifCigarP00581MF_04101130) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101130, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP00581131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101132, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101132) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101132, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101132) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_04101133) - 1) AS ?thisPositionOn16) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn17) . BIND(?this AS ?pfs1t144) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) . FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) . BIND(URI(CONCAT(STR(?this), '#MF_04101a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionP00581150 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581152 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101145 . ?templateMotifSequenceMatchRegionP00581150 faldo:begin ?templateMotifSequenceMatchBeginP00581151 . ?templateMotifSequenceMatchBeginP00581151 faldo:position ?templateMotifSequenceMatchBeginPositionP00581146 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581152 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101156 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101147 . ?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101155 . ?targetMotifMatchRegionMatchBeginMF_04101155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101148 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101156 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101145, 1, (STRLEN(?templateMotifCigarP00581MF_04101145) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101145, CONCAT('^(?:-*[^-]){', STR(((5 - ?templateMotifSequenceMatchBeginPositionP00581146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101147, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101147) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101147, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101147) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_04101148) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP00581165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101160 . ?templateMotifSequenceMatchRegionP00581165 faldo:begin ?templateMotifSequenceMatchBeginP00581166 . ?templateMotifSequenceMatchBeginP00581166 faldo:position ?templateMotifSequenceMatchBeginPositionP00581161 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581167 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101170 . ?targetMotifMatchRegionMatchBeginMF_04101170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101171 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101160, 1, (STRLEN(?templateMotifCigarP00581MF_04101160) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101160, CONCAT('^(?:-*[^-]){', STR(((5 - ?templateMotifSequenceMatchBeginPositionP00581161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101162, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101162) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101162, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101162) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_04101163) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs1t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP00581180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101175 . ?templateMotifSequenceMatchRegionP00581180 faldo:begin ?templateMotifSequenceMatchBeginP00581181 . ?templateMotifSequenceMatchBeginP00581181 faldo:position ?templateMotifSequenceMatchBeginPositionP00581176 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581182 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101185 . ?targetMotifMatchRegionMatchBeginMF_04101185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101186 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101175, 1, (STRLEN(?templateMotifCigarP00581MF_04101175) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101175, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP00581176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101177, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101177) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101177, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101177) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_04101178) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t189) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP00581195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101190 . ?templateMotifSequenceMatchRegionP00581195 faldo:begin ?templateMotifSequenceMatchBeginP00581196 . ?templateMotifSequenceMatchBeginP00581196 faldo:position ?templateMotifSequenceMatchBeginPositionP00581191 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581197 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101201 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101192 . ?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101200 . ?targetMotifMatchRegionMatchBeginMF_04101200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101193 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101201 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101190, 1, (STRLEN(?templateMotifCigarP00581MF_04101190) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101190, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP00581191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101192, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101192) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101192, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101192) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_04101193) - 1) AS ?thisPositionOn44) . BIND(?thisPositionOn44 AS ?thisPositionOn45) . BIND(?this AS ?pfs1t204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP00581210 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581212 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101205 . ?templateMotifSequenceMatchRegionP00581210 faldo:begin ?templateMotifSequenceMatchBeginP00581211 . ?templateMotifSequenceMatchBeginP00581211 faldo:position ?templateMotifSequenceMatchBeginPositionP00581206 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581212 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101216 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101207 . ?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101215 . ?targetMotifMatchRegionMatchBeginMF_04101215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101208 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101216 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101205, 1, (STRLEN(?templateMotifCigarP00581MF_04101205) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101205, CONCAT('^(?:-*[^-]){', STR(((475 - ?templateMotifSequenceMatchBeginPositionP00581206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101207, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101207) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101207, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101207) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_04101208) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs1t219) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP00581225 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581227 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101220 . ?templateMotifSequenceMatchRegionP00581225 faldo:begin ?templateMotifSequenceMatchBeginP00581226 . ?templateMotifSequenceMatchBeginP00581226 faldo:position ?templateMotifSequenceMatchBeginPositionP00581221 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581227 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101231 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101222 . ?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101230 . ?targetMotifMatchRegionMatchBeginMF_04101230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101223 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101231 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101220, 1, (STRLEN(?templateMotifCigarP00581MF_04101220) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101220, CONCAT('^(?:-*[^-]){', STR(((475 - ?templateMotifSequenceMatchBeginPositionP00581221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101222, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101222) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101222, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101222) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) . BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_04101223) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs1t234) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP00581240 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581242 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101235 . ?templateMotifSequenceMatchRegionP00581240 faldo:begin ?templateMotifSequenceMatchBeginP00581241 . ?templateMotifSequenceMatchBeginP00581241 faldo:position ?templateMotifSequenceMatchBeginPositionP00581236 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581242 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101246 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101237 . ?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101245 . ?targetMotifMatchRegionMatchBeginMF_04101245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101238 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101246 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101235, 1, (STRLEN(?templateMotifCigarP00581MF_04101235) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101235, CONCAT('^(?:-*[^-]){', STR(((476 - ?templateMotifSequenceMatchBeginPositionP00581236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101237, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101237) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101237, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101237) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) . BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_04101238) - 1) AS ?thisPositionOn65) . BIND(?thisPositionOn65 AS ?thisPositionOn66) . BIND(?this AS ?pfs1t249) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'A')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP00581255 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581257 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101250 . ?templateMotifSequenceMatchRegionP00581255 faldo:begin ?templateMotifSequenceMatchBeginP00581256 . ?templateMotifSequenceMatchBeginP00581256 faldo:position ?templateMotifSequenceMatchBeginPositionP00581251 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581257 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101261 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101252 . ?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101260 . ?targetMotifMatchRegionMatchBeginMF_04101260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101253 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101261 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101250, 1, (STRLEN(?templateMotifCigarP00581MF_04101250) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101250, CONCAT('^(?:-*[^-]){', STR(((654 - ?templateMotifSequenceMatchBeginPositionP00581251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101252, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101252) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101252, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101252) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) . BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_04101253) - 1) AS ?thisPositionOn72) . BIND(?thisPositionOn72 AS ?thisPositionOn73) . BIND(?this AS ?pfs1t264) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a68')) AS ?annotation68) . BIND(?this AS ?pfs67) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP00581270 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581272 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101265 . ?templateMotifSequenceMatchRegionP00581270 faldo:begin ?templateMotifSequenceMatchBeginP00581271 . ?templateMotifSequenceMatchBeginP00581271 faldo:position ?templateMotifSequenceMatchBeginPositionP00581266 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581272 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101276 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101267 . ?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101275 . ?targetMotifMatchRegionMatchBeginMF_04101275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101268 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101276 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101265, 1, (STRLEN(?templateMotifCigarP00581MF_04101265) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101265, CONCAT('^(?:-*[^-]){', STR(((654 - ?templateMotifSequenceMatchBeginPositionP00581266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101267, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101267) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101267, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101267) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) . BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_04101268) - 1) AS ?thisPositionOn79) . BIND(?thisPositionOn79 AS ?thisPositionOn80) . BIND(?this AS ?pfs1t279) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP00581285 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581287 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101280 . ?templateMotifSequenceMatchRegionP00581285 faldo:begin ?templateMotifSequenceMatchBeginP00581286 . ?templateMotifSequenceMatchBeginP00581286 faldo:position ?templateMotifSequenceMatchBeginPositionP00581281 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581287 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101291 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101282 . ?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101290 . ?targetMotifMatchRegionMatchBeginMF_04101290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101283 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101291 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101280, 1, (STRLEN(?templateMotifCigarP00581MF_04101280) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101280, CONCAT('^(?:-*[^-]){', STR(((506 - ?templateMotifSequenceMatchBeginPositionP00581281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101282, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101282) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101282, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101282) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) . BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_04101283) - 1) AS ?thisPositionOn87) . BIND(?thisPositionOn87 AS ?thisPositionOn88) . BIND(?this AS ?pfs1t294) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse84) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a82')) AS ?annotation82) . BIND(?this AS ?pfs81) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionP00581300 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581302 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101295 . ?templateMotifSequenceMatchRegionP00581300 faldo:begin ?templateMotifSequenceMatchBeginP00581301 . ?templateMotifSequenceMatchBeginP00581301 faldo:position ?templateMotifSequenceMatchBeginPositionP00581296 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581302 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101306 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101297 . ?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101305 . ?targetMotifMatchRegionMatchBeginMF_04101305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101298 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101306 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101295, 1, (STRLEN(?templateMotifCigarP00581MF_04101295) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101295, CONCAT('^(?:-*[^-]){', STR(((518 - ?templateMotifSequenceMatchBeginPositionP00581296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101297, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101297) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101297, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101297) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) . BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_04101298) - 1) AS ?thisPositionOn95) . BIND(?thisPositionOn95 AS ?thisPositionOn96) . BIND(?this AS ?pfs1t309) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse92) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a90')) AS ?annotation90) . BIND(?this AS ?pfs89) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionP00581315 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581317 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101310 . ?templateMotifSequenceMatchRegionP00581315 faldo:begin ?templateMotifSequenceMatchBeginP00581316 . ?templateMotifSequenceMatchBeginP00581316 faldo:position ?templateMotifSequenceMatchBeginPositionP00581311 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581317 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101321 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101312 . ?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101320 . ?targetMotifMatchRegionMatchBeginMF_04101320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101313 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101321 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101310, 1, (STRLEN(?templateMotifCigarP00581MF_04101310) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101310, CONCAT('^(?:-*[^-]){', STR(((522 - ?templateMotifSequenceMatchBeginPositionP00581311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101312, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101312) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101312, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101312) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) . BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_04101313) - 1) AS ?thisPositionOn103) . BIND(?thisPositionOn103 AS ?thisPositionOn104) . BIND(?this AS ?pfs1t324) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse100) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a98')) AS ?annotation98) . BIND(?this AS ?pfs97) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch329 faldo:location ?templateMotifSequenceMatchRegionP00581330 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581332 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00581MF_04101325 . ?templateMotifSequenceMatchRegionP00581330 faldo:begin ?templateMotifSequenceMatchBeginP00581331 . ?templateMotifSequenceMatchBeginP00581331 faldo:position ?templateMotifSequenceMatchBeginPositionP00581326 ; faldo:reference isoform:P00581-1 . ?templateMotifSequenceProfileAlignmentOperationP00581332 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . ?targetMotifMatch333 faldo:location ?targetMotifMatchRegionMatch334 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101336 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00581MF_04101327 . ?targetMotifMatchRegionMatch334 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101335 . ?targetMotifMatchRegionMatchBeginMF_04101335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101328 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04101336 edam:has_input signature:MF_04101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101325, 1, (STRLEN(?templateMotifCigarP00581MF_04101325) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101325, CONCAT('^(?:-*[^-]){', STR(((526 - ?templateMotifSequenceMatchBeginPositionP00581326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1337) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101327, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101327) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101327, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101327) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), '')))), '[^-]', ''))) AS ?step2338) . BIND(((?step2338 + ?targetMotifMatchRegionMatchBeginPositionMF_04101328) - 1) AS ?thisPositionOn111) . BIND(?thisPositionOn111 AS ?thisPositionOn112) . BIND(?this AS ?pfs1t339) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfsb107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfse108) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn111, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_04101a106')) AS ?annotation106) . BIND(?this AS ?pfs105) . } }