CONSTRUCT { _:970481 up:source unirule:MF_04144 . _:970482 up:source unirule:MF_04144 . _:970483 up:source unirule:MF_04144 . _:970484 up:source unirule:MF_04144 . _:970485 up:source unirule:MF_04144 . _:970486 up:source unirule:MF_04144 . _:970487 up:source unirule:MF_04144 . _:970488 up:source unirule:MF_04144 . _:970489 up:source unirule:MF_04144 . _:970490 up:source unirule:MF_04144 . _:970491 up:source unirule:MF_04144 . _:970492 up:source unirule:MF_04144 . _:970493 up:source unirule:MF_04144 . _:970494 up:source unirule:MF_04144 . _:970495 up:source unirule:MF_04144 . _:970496 up:source unirule:MF_04144 . _:970497 up:ecName '3.1.21.4' ; up:fullName 'Endonuclease' ; rdf:type up:Structured_Name . _:970498 up:source unirule:MF_04144 . _:970499 up:ecName '3.6.4.-' ; up:fullName 'ATPase' ; rdf:type up:Structured_Name . _:970500 up:source unirule:MF_04144 . _:970501 up:ecName '3.6.4.-' ; up:fullName 'ATPase' ; rdf:type up:Structured_Name . _:970502 up:source unirule:MF_04144 . _:970503 up:source unirule:MF_04144 . _:970504 up:source unirule:MF_04144 . _:970505 up:source unirule:MF_04144 . _:970506 up:source unirule:MF_04144 . _:970507 up:source unirule:MF_04144 . _:970508 up:source unirule:MF_04144 . _:970509 up:source unirule:MF_04144 . _:970510 up:source unirule:MF_04144 . _:970511 up:source unirule:MF_04144 . _:970512 up:source unirule:MF_04144 . _:970513 up:source unirule:MF_04144 . _:970514 up:source unirule:MF_04144 . _:970515 up:source unirule:MF_04144 . _:970516 up:source unirule:MF_04144 . ?this up:annotation ?annotation0 , ?annotation2 ; up:classifiedWith GO:0004519 , GO:0005524 , GO:0009036 , GO:0016887 , GO:0019073 , GO:0098009 , keyword:1035 , keyword:1188 , keyword:231 , keyword:255 , keyword:378 , keyword:540 , keyword:547 , keyword:67 ; up:domain ?namedpart3 , ?namedpart4 , ?namedpart5 . ?annotation0 a up:Subcellular_Location_Annotation ; rdfs:comment 'The terminase lies at a unique vertex of the procapsid during viral DNA packaging' . ?annotation0li1 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the lambdavirus large terminase family.' . ?namedpart3 up:recommendedName _:970497 . ?namedpart4 up:recommendedName _:970499 . ?namedpart5 up:recommendedName _:970501 . ?case6 up:classifiedWith GO:0046872 , keyword:460 , keyword:479 . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:18420 . ?pfs17 up:annotation ?annotation18 , ?annotation23 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Walker A motif' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Walker B motif' . ?pfsb24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:30616 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; rdf:type up:Region_Annotation ; rdfs:comment 'Leucine zipper' . ?pfsb37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'For ATPase activity' . ?pfsb43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; rdf:type up:Site_Annotation ; rdfs:comment 'ATP-binding' . ?pfsb49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with the terminase small subunit' . ?pfsb55 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; rdf:type up:Region_Annotation ; rdfs:comment 'DNA packaging/ATPase' . ?pfsb61 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; rdf:type up:Region_Annotation ; rdfs:comment 'Endonuclease' . ?pfsb67 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; rdf:type up:Region_Annotation ; rdfs:comment 'Prohead binding' . ?pfsb73 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . _:970517 a rdf:Statement ; up:attribution _:970481 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:970518 a rdf:Statement ; up:attribution _:970482 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:970519 a rdf:Statement ; up:attribution _:970483 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:970520 a rdf:Statement ; up:attribution _:970484 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:255 . _:970521 a rdf:Statement ; up:attribution _:970485 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1035 . _:970522 a rdf:Statement ; up:attribution _:970486 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:970523 a rdf:Statement ; up:attribution _:970487 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:970524 a rdf:Statement ; up:attribution _:970488 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:970525 a rdf:Statement ; up:attribution _:970489 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:231 . _:970526 a rdf:Statement ; up:attribution _:970490 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1188 . _:970527 a rdf:Statement ; up:attribution _:970491 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0098009 . _:970528 a rdf:Statement ; up:attribution _:970492 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:970529 a rdf:Statement ; up:attribution _:970493 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016887 . _:970530 a rdf:Statement ; up:attribution _:970494 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004519 . _:970531 a rdf:Statement ; up:attribution _:970495 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019073 . _:970532 a rdf:Statement ; up:attribution _:970496 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009036 . _:970533 a rdf:Statement ; up:attribution _:970498 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart3 . _:970534 a rdf:Statement ; up:attribution _:970500 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart4 . _:970535 a rdf:Statement ; up:attribution _:970502 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart5 . _:970536 a rdf:Statement ; up:attribution _:970503 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:970537 a rdf:Statement ; up:attribution _:970504 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:970538 a rdf:Statement ; up:attribution _:970505 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0046872 . _:970539 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:970540 a rdf:Statement ; up:attribution _:970506 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:970541 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:970542 a rdf:Statement ; up:attribution _:970507 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:970543 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:970544 a rdf:Statement ; up:attribution _:970508 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:970545 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:970546 a rdf:Statement ; up:attribution _:970509 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:970547 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:970548 a rdf:Statement ; up:attribution _:970510 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:970549 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:970550 a rdf:Statement ; up:attribution _:970511 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:970551 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:970552 a rdf:Statement ; up:attribution _:970512 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:970553 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:970554 a rdf:Statement ; up:attribution _:970513 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:970555 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:970556 a rdf:Statement ; up:attribution _:970514 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:970557 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:970558 a rdf:Statement ; up:attribution _:970515 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:970559 a rdf:Statement ; up:source unirule:MF_04144 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:970560 a rdf:Statement ; up:attribution _:970516 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04144 #Rule MF_04144 Created by:? on:2019-12-20 Modified by:Chantal Hulo on:2025-04-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04144 . ?thisOrganism rdfs:subClassOf+ taxon:2731619 . BIND(URI(CONCAT(STR(?this), '#MF_04144a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_04144a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_04144a3')) AS ?namedpart3) . BIND(URI(CONCAT(STR(?this), '#MF_04144a4')) AS ?namedpart4) . BIND(URI(CONCAT(STR(?this), '#MF_04144a5')) AS ?namedpart5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP0370882 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0370884 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03708MF_0414477 . ?templateMotifSequenceMatchRegionP0370882 faldo:begin ?templateMotifSequenceMatchBeginP0370883 . ?templateMotifSequenceMatchBeginP0370883 faldo:position ?templateMotifSequenceMatchBeginPositionP0370878 ; faldo:reference isoform:P03708-1 . ?templateMotifSequenceProfileAlignmentOperationP0370884 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0414488 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03708MF_0414479 . ?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0414487 . ?targetMotifMatchRegionMatchBeginMF_0414487 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414480 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0414488 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagMagnesium) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_0414477, 1, (STRLEN(?templateMotifCigarP03708MF_0414477) - STRLEN(REPLACE(?templateMotifCigarP03708MF_0414477, CONCAT('^(?:-*[^-]){', STR(((401 - ?templateMotifSequenceMatchBeginPositionP0370878) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_0414479, 1, (STRLEN(?targetMotifMatchCigarP03708MF_0414479) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_0414479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_0414479, 1, (STRLEN(?targetMotifMatchCigarP03708MF_0414479) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_0414479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) . BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0414480) - 1) AS ?thisPositionOn15) . BIND(?thisPositionOn15 AS ?thisPositionOn16) . BIND(?this AS ?pfs1t91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04144a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP0370897 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0370899 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03708MF_0414492 . ?templateMotifSequenceMatchRegionP0370897 faldo:begin ?templateMotifSequenceMatchBeginP0370898 . ?templateMotifSequenceMatchBeginP0370898 faldo:position ?templateMotifSequenceMatchBeginPositionP0370893 ; faldo:reference isoform:P03708-1 . ?templateMotifSequenceProfileAlignmentOperationP0370899 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04144103 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03708MF_0414494 . ?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04144102 . ?targetMotifMatchRegionMatchBeginMF_04144102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414495 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04144103 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_0414492, 1, (STRLEN(?templateMotifCigarP03708MF_0414492) - STRLEN(REPLACE(?templateMotifCigarP03708MF_0414492, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP0370893) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_0414494, 1, (STRLEN(?targetMotifMatchCigarP03708MF_0414494) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_0414494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_0414494, 1, (STRLEN(?targetMotifMatchCigarP03708MF_0414494) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_0414494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) . BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0414495) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_0414492, 1, (STRLEN(?templateMotifCigarP03708MF_0414492) - STRLEN(REPLACE(?templateMotifCigarP03708MF_0414492, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP0370893) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_0414494, 1, (STRLEN(?targetMotifMatchCigarP03708MF_0414494) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_0414494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_0414494, 1, (STRLEN(?targetMotifMatchCigarP03708MF_0414494) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_0414494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) . BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0414495) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs2t108) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)[QR][ARNDCQEGHILKMFPSTWYVBZJUOX][GLM][FKILY][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_0414492, 1, (STRLEN(?templateMotifCigarP03708MF_0414492) - STRLEN(REPLACE(?templateMotifCigarP03708MF_0414492, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP0370893) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_0414494, 1, (STRLEN(?targetMotifMatchCigarP03708MF_0414494) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_0414494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_0414494, 1, (STRLEN(?targetMotifMatchCigarP03708MF_0414494) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_0414494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) . BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0414495) - 1) AS ?thisPositionOn26) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_0414492, 1, (STRLEN(?templateMotifCigarP03708MF_0414492) - STRLEN(REPLACE(?templateMotifCigarP03708MF_0414492, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP0370893) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_0414494, 1, (STRLEN(?targetMotifMatchCigarP03708MF_0414494) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_0414494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_0414494, 1, (STRLEN(?targetMotifMatchCigarP03708MF_0414494) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_0414494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_0414495) - 1) AS ?thisPositionOn27) . BIND(?this AS ?pfs2t113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)DE', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP03708119 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03708121 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03708MF_04144114 . ?templateMotifSequenceMatchRegionP03708119 faldo:begin ?templateMotifSequenceMatchBeginP03708120 . ?templateMotifSequenceMatchBeginP03708120 faldo:position ?templateMotifSequenceMatchBeginPositionP03708115 ; faldo:reference isoform:P03708-1 . ?templateMotifSequenceProfileAlignmentOperationP03708121 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04144125 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03708MF_04144116 . ?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04144124 . ?targetMotifMatchRegionMatchBeginMF_04144124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04144117 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04144125 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144114, 1, (STRLEN(?templateMotifCigarP03708MF_04144114) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144114, CONCAT('^(?:-*[^-]){', STR(((491 - ?templateMotifSequenceMatchBeginPositionP03708115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144116, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144116) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144116, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144116) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) . BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_04144117) - 1) AS ?thisPositionOn33) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144114, 1, (STRLEN(?templateMotifCigarP03708MF_04144114) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144114, CONCAT('^(?:-*[^-]){', STR(((498 - ?templateMotifSequenceMatchBeginPositionP03708115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144116, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144116) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144116, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144116) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) . BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_04144117) - 1) AS ?thisPositionOn34) . BIND(?this AS ?pfs3t130) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)GKP', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) . BIND(URI(CONCAT(STR(?this), '#MF_04144a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP03708136 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03708138 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03708MF_04144131 . ?templateMotifSequenceMatchRegionP03708136 faldo:begin ?templateMotifSequenceMatchBeginP03708137 . ?templateMotifSequenceMatchBeginP03708137 faldo:position ?templateMotifSequenceMatchBeginPositionP03708132 ; faldo:reference isoform:P03708-1 . ?templateMotifSequenceProfileAlignmentOperationP03708138 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04144142 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03708MF_04144133 . ?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04144141 . ?targetMotifMatchRegionMatchBeginMF_04144141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04144134 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04144142 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144131, 1, (STRLEN(?templateMotifCigarP03708MF_04144131) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144131, CONCAT('^(?:-*[^-]){', STR(((588 - ?templateMotifSequenceMatchBeginPositionP03708132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144133, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144133) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144133, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144133) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) . BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_04144134) - 1) AS ?thisPositionOn39) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144131, 1, (STRLEN(?templateMotifCigarP03708MF_04144131) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144131, CONCAT('^(?:-*[^-]){', STR(((616 - ?templateMotifSequenceMatchBeginPositionP03708132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144133, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144133) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144133, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144133) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) . BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_04144134) - 1) AS ?thisPositionOn40) . BIND(?this AS ?pfs3t147) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) . FILTER (REGEX('L[ARNDCQEGHILKMFPSTWYVBZJUOX]{6)L[ARNDCQEGHILKMFPSTWYVBZJUOX]{6)[IL][ARNDCQEGHILKMFPSTWYVBZJUOX]{6)L[ARNDCQEGHILKMFPSTWYVBZJUOX]{6)L', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) . BIND(URI(CONCAT(STR(?this), '#MF_04144a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP03708153 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03708155 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03708MF_04144148 . ?templateMotifSequenceMatchRegionP03708153 faldo:begin ?templateMotifSequenceMatchBeginP03708154 . ?templateMotifSequenceMatchBeginP03708154 faldo:position ?templateMotifSequenceMatchBeginPositionP03708149 ; faldo:reference isoform:P03708-1 . ?templateMotifSequenceProfileAlignmentOperationP03708155 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04144159 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03708MF_04144150 . ?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04144158 . ?targetMotifMatchRegionMatchBeginMF_04144158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04144151 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04144159 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144148, 1, (STRLEN(?templateMotifCigarP03708MF_04144148) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144148, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP03708149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144150, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144150) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144150, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144150) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) . BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_04144151) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs3t162) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_04144a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP03708168 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03708170 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03708MF_04144163 . ?templateMotifSequenceMatchRegionP03708168 faldo:begin ?templateMotifSequenceMatchBeginP03708169 . ?templateMotifSequenceMatchBeginP03708169 faldo:position ?templateMotifSequenceMatchBeginPositionP03708164 ; faldo:reference isoform:P03708-1 . ?templateMotifSequenceProfileAlignmentOperationP03708170 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04144174 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03708MF_04144165 . ?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04144173 . ?targetMotifMatchRegionMatchBeginMF_04144173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04144166 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04144174 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144163, 1, (STRLEN(?templateMotifCigarP03708MF_04144163) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144163, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP03708164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144165, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144165) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144165, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144165) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) . BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_04144166) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs3t177) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_04144a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP03708183 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03708185 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03708MF_04144178 . ?templateMotifSequenceMatchRegionP03708183 faldo:begin ?templateMotifSequenceMatchBeginP03708184 . ?templateMotifSequenceMatchBeginP03708184 faldo:position ?templateMotifSequenceMatchBeginPositionP03708179 ; faldo:reference isoform:P03708-1 . ?templateMotifSequenceProfileAlignmentOperationP03708185 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04144189 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03708MF_04144180 . ?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04144188 . ?targetMotifMatchRegionMatchBeginMF_04144188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04144181 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04144189 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:186765 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144178, 1, (STRLEN(?templateMotifCigarP03708MF_04144178) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144178, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP03708179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144180, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144180) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144180, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144180) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_04144181) - 1) AS ?thisPositionOn57) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144178, 1, (STRLEN(?templateMotifCigarP03708MF_04144178) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144178, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP03708179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144180, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144180) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144180, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144180) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_04144181) - 1) AS ?thisPositionOn58) . BIND(?this AS ?pfs4t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) . FILTER ((BOUND(?thisPositionOn57) && BOUND(?thisPositionOn58))) . BIND(URI(CONCAT(STR(?this), '#MF_04144a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP03708200 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03708202 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03708MF_04144195 . ?templateMotifSequenceMatchRegionP03708200 faldo:begin ?templateMotifSequenceMatchBeginP03708201 . ?templateMotifSequenceMatchBeginP03708201 faldo:position ?templateMotifSequenceMatchBeginPositionP03708196 ; faldo:reference isoform:P03708-1 . ?templateMotifSequenceProfileAlignmentOperationP03708202 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04144206 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03708MF_04144197 . ?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04144205 . ?targetMotifMatchRegionMatchBeginMF_04144205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04144198 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04144206 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:186765 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144195, 1, (STRLEN(?templateMotifCigarP03708MF_04144195) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144195, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP03708196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144197, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144197) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144197, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144197) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) . BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_04144198) - 1) AS ?thisPositionOn63) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144195, 1, (STRLEN(?templateMotifCigarP03708MF_04144195) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144195, CONCAT('^(?:-*[^-]){', STR(((349 - ?templateMotifSequenceMatchBeginPositionP03708196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144197, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144197) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144197, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144197) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) . BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_04144198) - 1) AS ?thisPositionOn64) . BIND(?this AS ?pfs4t211) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse62) . FILTER ((BOUND(?thisPositionOn63) && BOUND(?thisPositionOn64))) . BIND(URI(CONCAT(STR(?this), '#MF_04144a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP03708217 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03708219 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03708MF_04144212 . ?templateMotifSequenceMatchRegionP03708217 faldo:begin ?templateMotifSequenceMatchBeginP03708218 . ?templateMotifSequenceMatchBeginP03708218 faldo:position ?templateMotifSequenceMatchBeginPositionP03708213 ; faldo:reference isoform:P03708-1 . ?templateMotifSequenceProfileAlignmentOperationP03708219 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04144223 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03708MF_04144214 . ?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04144222 . ?targetMotifMatchRegionMatchBeginMF_04144222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04144215 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04144223 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:186765 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144212, 1, (STRLEN(?templateMotifCigarP03708MF_04144212) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144212, CONCAT('^(?:-*[^-]){', STR(((401 - ?templateMotifSequenceMatchBeginPositionP03708213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144214, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144214) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144214, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144214) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) . BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_04144215) - 1) AS ?thisPositionOn69) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144212, 1, (STRLEN(?templateMotifCigarP03708MF_04144212) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144212, CONCAT('^(?:-*[^-]){', STR(((586 - ?templateMotifSequenceMatchBeginPositionP03708213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144214, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144214) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144214, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144214) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) . BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_04144215) - 1) AS ?thisPositionOn70) . BIND(?this AS ?pfs4t228) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse68) . FILTER ((BOUND(?thisPositionOn69) && BOUND(?thisPositionOn70))) . BIND(URI(CONCAT(STR(?this), '#MF_04144a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP03708234 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03708236 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03708MF_04144229 . ?templateMotifSequenceMatchRegionP03708234 faldo:begin ?templateMotifSequenceMatchBeginP03708235 . ?templateMotifSequenceMatchBeginP03708235 faldo:position ?templateMotifSequenceMatchBeginPositionP03708230 ; faldo:reference isoform:P03708-1 . ?templateMotifSequenceProfileAlignmentOperationP03708236 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04144240 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03708MF_04144231 . ?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04144239 . ?targetMotifMatchRegionMatchBeginMF_04144239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04144232 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04144240 edam:has_input signature:MF_04144 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:186765 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144229, 1, (STRLEN(?templateMotifCigarP03708MF_04144229) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144229, CONCAT('^(?:-*[^-]){', STR(((610 - ?templateMotifSequenceMatchBeginPositionP03708230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144231, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144231) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144231, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144231) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) . BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_04144232) - 1) AS ?thisPositionOn75) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03708MF_04144229, 1, (STRLEN(?templateMotifCigarP03708MF_04144229) - STRLEN(REPLACE(?templateMotifCigarP03708MF_04144229, CONCAT('^(?:-*[^-]){', STR(((641 - ?templateMotifSequenceMatchBeginPositionP03708230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03708MF_04144231, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144231) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03708MF_04144231, 1, (STRLEN(?targetMotifMatchCigarP03708MF_04144231) - STRLEN(REPLACE(?targetMotifMatchCigarP03708MF_04144231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) . BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_04144232) - 1) AS ?thisPositionOn76) . BIND(?this AS ?pfs4t245) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) . FILTER ((BOUND(?thisPositionOn75) && BOUND(?thisPositionOn76))) . BIND(URI(CONCAT(STR(?this), '#MF_04144a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag246) . } BIND(IF(BOUND(?tagMagnesium), ?caseWithTag246, ?UNBOUND_VARIABLE) AS ?case6) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag247) . } BIND(IF(BOUND(?tagMagnesium), ?caseWithTag247, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:186765 . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:186765 . })) . BIND(?this AS ?case9) . } }