CONSTRUCT { _:974805 up:source unirule:MF_04150 . _:974806 up:source unirule:MF_04150 . _:974807 up:source unirule:MF_04150 . _:974808 up:source unirule:MF_04150 . _:974809 up:source unirule:MF_04150 . _:974810 up:source unirule:MF_04150 . _:974811 up:source unirule:MF_04150 . _:974812 up:source unirule:MF_04150 . _:974813 up:source unirule:MF_04150 . _:974814 up:source unirule:MF_04150 . _:974815 up:source unirule:MF_04150 . _:974816 up:source unirule:MF_04150 . _:974817 up:source unirule:MF_04150 . _:974818 up:source unirule:MF_04150 . _:974819 up:source unirule:MF_04150 . _:974820 up:source unirule:MF_04150 . _:974821 up:source unirule:MF_04150 . _:974822 up:source unirule:MF_04150 . _:974823 up:source unirule:MF_04150 . _:974824 up:source unirule:MF_04150 . _:974825 up:source unirule:MF_04150 . _:974826 up:source unirule:MF_04150 . _:974827 up:source unirule:MF_04150 . _:974828 up:source unirule:MF_04150 . _:974829 up:source unirule:MF_04150 . _:974830 up:source unirule:MF_04150 . _:974831 up:source unirule:MF_04150 . _:974832 up:source unirule:MF_04150 . _:974833 up:source unirule:MF_04150 . _:974834 up:source unirule:MF_04150 . _:974835 up:source unirule:MF_04150 . _:974836 up:source unirule:MF_04150 . ?this up:annotation ?annotation0 , ?annotation1 , ?annotation2 ; up:classifiedWith GO:0003972 , GO:0005524 , GO:0042245 , GO:0046872 , keyword:436 , keyword:547 , keyword:67 , keyword:692 . ?annotation0 a up:Function_Annotation ; rdfs:comment "Repairs 3'-OH/5'-PO4 nicks in duplex RNA or RNA:DNA hybrid in which the broken 3'-OH strand is RNA. The nick ligation reaction entails three nucleotidyl transfer steps. In the first step, the RNA ligase reacts with ATP in the absence of nucleic acid to form a covalent ligase-AMP intermediate and release pyrophosphate. In step 2, the ligase-AMP binds to the nicked duplex nucleic acid and transfers the adenylate to the 5'-PO4 terminus to form an adenylylated nicked intermediate. In step 3, the RNA ligase directs the attack of the nick 3'-OH on the 5'-phosphoanhydride linkage, resulting in a repaired 3' - 5' phosphodiester and release of AMP." . ?annotation1 a up:Domain_Annotation ; rdfs:comment 'The adenylyltransferase domain in the N-terminus performs step 1 and step 3 reactions. The C-terminus domain is required for step 2 of the ligation pathway.' . ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the RNA ligase 2 family.' . ?case3 up:alternativeName ?name5 ; up:classifiedWith keyword:460 , keyword:479 ; up:recommendedName ?name4 . ?name4 up:ecName '6.5.1.3' ; up:fullName 'RNA ligase 2' ; rdf:type up:Structured_Name . ?name5 up:fullName 'Rnl2' ; rdf:type up:Structured_Name . ?case6 up:recommendedName ?name7 . ?name7 up:ecName '6.5.1.-' ; up:fullName 'RNA ligase' ; rdf:type up:Structured_Name . ?pfs8 up:annotation ?annotation9 , ?annotation14 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'N6-AMP-lysine intermediate' . ?pfsb10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:18420 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Region_Annotation ; rdfs:comment 'Adenylyltransferase' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:456215 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:456215 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:456215 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:456215 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:456215 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:456215 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:456215 . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf chebi:18420 . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; up:ligand ?ligand86 ; rdf:type up:Binding_Site_Annotation . ?pfsb84 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?ligand86 rdfs:subClassOf chebi:18420 . ?pfs89 up:annotation ?annotation90 . ?annotation90 faldo:begin ?pfsb91 ; faldo:end ?pfse92 ; up:ligand ?ligand93 ; rdf:type up:Binding_Site_Annotation . ?pfsb91 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?pfse92 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?ligand93 rdfs:subClassOf chebi:18420 . ?pfs96 up:annotation ?annotation97 . ?annotation97 faldo:begin ?pfsb98 ; faldo:end ?pfse99 ; up:ligand ?ligand100 ; rdf:type up:Binding_Site_Annotation . ?pfsb98 faldo:position ?thisPositionOn101 ; rdf:type faldo:ExactPosition . ?pfse99 faldo:position ?thisPositionOn102 ; rdf:type faldo:ExactPosition . ?ligand100 rdfs:subClassOf chebi:18420 . ?pfs103 up:annotation ?annotation104 . ?annotation104 faldo:begin ?pfsb105 ; faldo:end ?pfse106 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interaction with RNA' . ?pfsb105 faldo:position ?thisPositionOn107 ; rdf:type faldo:ExactPosition . ?pfse106 faldo:position ?thisPositionOn108 ; rdf:type faldo:ExactPosition . ?pfs109 up:annotation ?annotation110 . ?annotation110 faldo:begin ?pfsb111 ; faldo:end ?pfse112 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interaction with RNA' . ?pfsb111 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?pfse112 faldo:position ?thisPositionOn114 ; rdf:type faldo:ExactPosition . _:974837 a rdf:Statement ; up:attribution _:974805 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:974838 a rdf:Statement ; up:attribution _:974806 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:974839 a rdf:Statement ; up:attribution _:974807 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:974840 a rdf:Statement ; up:attribution _:974808 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:974841 a rdf:Statement ; up:attribution _:974809 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:974842 a rdf:Statement ; up:attribution _:974810 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:974843 a rdf:Statement ; up:attribution _:974811 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:692 . _:974844 a rdf:Statement ; up:attribution _:974812 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:974845 a rdf:Statement ; up:attribution _:974813 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0046872 . _:974846 a rdf:Statement ; up:attribution _:974814 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003972 . _:974847 a rdf:Statement ; up:attribution _:974815 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0042245 . _:974848 a rdf:Statement ; up:attribution _:974816 ; rdf:subject ?case3 ; rdf:predicate up:recommendedName ; rdf:object ?name4 . _:974849 a rdf:Statement ; up:attribution _:974817 ; rdf:subject ?case3 ; rdf:predicate up:alternativeName ; rdf:object ?name5 . _:974850 a rdf:Statement ; up:attribution _:974818 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:974851 a rdf:Statement ; up:attribution _:974819 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:974852 a rdf:Statement ; up:attribution _:974820 ; rdf:subject ?case6 ; rdf:predicate up:recommendedName ; rdf:object ?name7 . _:974853 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:974854 a rdf:Statement ; up:attribution _:974821 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:974855 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:974856 a rdf:Statement ; up:attribution _:974822 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:974857 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:974858 a rdf:Statement ; up:attribution _:974823 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:974859 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:974860 a rdf:Statement ; up:attribution _:974824 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:974861 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:974862 a rdf:Statement ; up:attribution _:974825 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:974863 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:974864 a rdf:Statement ; up:attribution _:974826 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:974865 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:974866 a rdf:Statement ; up:attribution _:974827 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:974867 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:974868 a rdf:Statement ; up:attribution _:974828 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:974869 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:974870 a rdf:Statement ; up:attribution _:974829 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:974871 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:974872 a rdf:Statement ; up:attribution _:974830 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:974873 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:974874 a rdf:Statement ; up:attribution _:974831 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:974875 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:974876 a rdf:Statement ; up:attribution _:974832 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:974877 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs89 ; rdf:predicate up:annotation ; rdf:object ?annotation90 . _:974878 a rdf:Statement ; up:attribution _:974833 ; rdf:subject ?pfs89 ; rdf:predicate up:annotation ; rdf:object ?annotation90 . _:974879 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:974880 a rdf:Statement ; up:attribution _:974834 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:974881 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs103 ; rdf:predicate up:annotation ; rdf:object ?annotation104 . _:974882 a rdf:Statement ; up:attribution _:974835 ; rdf:subject ?pfs103 ; rdf:predicate up:annotation ; rdf:object ?annotation104 . _:974883 a rdf:Statement ; up:source unirule:MF_04150 ; rdf:subject ?pfs109 ; rdf:predicate up:annotation ; rdf:object ?annotation110 . _:974884 a rdf:Statement ; up:attribution _:974836 ; rdf:subject ?pfs109 ; rdf:predicate up:annotation ; rdf:object ?annotation110 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04150 #Rule MF_04150 Created by:? on:2020-03-06 Modified by:Edouard de Castro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04150 . ?thisOrganism rdfs:subClassOf+ taxon:10239 . BIND(URI(CONCAT(STR(?this), '#MF_04150a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_04150a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_04150a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP32277120 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277122 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150115 . ?templateMotifSequenceMatchRegionP32277120 faldo:begin ?templateMotifSequenceMatchBeginP32277121 . ?templateMotifSequenceMatchBeginP32277121 faldo:position ?templateMotifSequenceMatchBeginPositionP32277116 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277122 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150126 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150117 . ?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150125 . ?targetMotifMatchRegionMatchBeginMF_04150125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150118 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150126 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150115, 1, (STRLEN(?templateMotifCigarP32277MF_04150115) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150115, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP32277116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150117, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150117) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150117, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150117) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) . BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_04150118) - 1) AS ?thisPositionOn12) . BIND(?thisPositionOn12 AS ?thisPositionOn13) . BIND(?this AS ?pfs1t129) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'K')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150115, 1, (STRLEN(?templateMotifCigarP32277MF_04150115) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150115, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP32277116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150117, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150117) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150117, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150117) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_04150118) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t132) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'E')) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionP32277138 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277140 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150133 . ?templateMotifSequenceMatchRegionP32277138 faldo:begin ?templateMotifSequenceMatchBeginP32277139 . ?templateMotifSequenceMatchBeginP32277139 faldo:position ?templateMotifSequenceMatchBeginPositionP32277134 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277140 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150144 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150135 . ?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150143 . ?targetMotifMatchRegionMatchBeginMF_04150143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150136 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150144 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150133, 1, (STRLEN(?templateMotifCigarP32277MF_04150133) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150133, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP32277134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150135, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150135) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150135, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150135) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) . BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_04150136) - 1) AS ?thisPositionOn24) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150133, 1, (STRLEN(?templateMotifCigarP32277MF_04150133) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150133, CONCAT('^(?:-*[^-]){', STR(((234 - ?templateMotifSequenceMatchBeginPositionP32277134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150135, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150135) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150135, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150135) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_04150136) - 1) AS ?thisPositionOn25) . BIND(?this AS ?pfs2t149) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) . BIND(URI(CONCAT(STR(?this), '#MF_04150a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP32277155 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277157 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150150 . ?templateMotifSequenceMatchRegionP32277155 faldo:begin ?templateMotifSequenceMatchBeginP32277156 . ?templateMotifSequenceMatchBeginP32277156 faldo:position ?templateMotifSequenceMatchBeginPositionP32277151 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277157 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150161 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150152 . ?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150160 . ?targetMotifMatchRegionMatchBeginMF_04150160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150153 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150161 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150150, 1, (STRLEN(?templateMotifCigarP32277MF_04150150) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150150, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP32277151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150152, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150152) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150152, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150152) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) . BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_04150153) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs2t164) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP32277170 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277172 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150165 . ?templateMotifSequenceMatchRegionP32277170 faldo:begin ?templateMotifSequenceMatchBeginP32277171 . ?templateMotifSequenceMatchBeginP32277171 faldo:position ?templateMotifSequenceMatchBeginPositionP32277166 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277172 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150176 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150167 . ?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150175 . ?targetMotifMatchRegionMatchBeginMF_04150175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150168 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150176 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150165, 1, (STRLEN(?templateMotifCigarP32277MF_04150165) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150165, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP32277166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150167, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150167) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150167, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150167) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) . BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_04150168) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs2t179) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER (REGEX('[IL]', SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_04150a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP32277185 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277187 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150180 . ?templateMotifSequenceMatchRegionP32277185 faldo:begin ?templateMotifSequenceMatchBeginP32277186 . ?templateMotifSequenceMatchBeginP32277186 faldo:position ?templateMotifSequenceMatchBeginPositionP32277181 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277187 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150191 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150182 . ?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150190 . ?targetMotifMatchRegionMatchBeginMF_04150190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150183 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150191 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150180, 1, (STRLEN(?templateMotifCigarP32277MF_04150180) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150180, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP32277181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150182, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150182) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150182, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150182) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_04150183) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs2t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP32277200 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277202 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150195 . ?templateMotifSequenceMatchRegionP32277200 faldo:begin ?templateMotifSequenceMatchBeginP32277201 . ?templateMotifSequenceMatchBeginP32277201 faldo:position ?templateMotifSequenceMatchBeginPositionP32277196 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277202 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150206 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150197 . ?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150205 . ?targetMotifMatchRegionMatchBeginMF_04150205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150198 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150206 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150195, 1, (STRLEN(?templateMotifCigarP32277MF_04150195) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150195, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP32277196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150197, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150197) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150197, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150197) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) . BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_04150198) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs2t209) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP32277215 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277217 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150210 . ?templateMotifSequenceMatchRegionP32277215 faldo:begin ?templateMotifSequenceMatchBeginP32277216 . ?templateMotifSequenceMatchBeginP32277216 faldo:position ?templateMotifSequenceMatchBeginPositionP32277211 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277217 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150221 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150212 . ?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150220 . ?targetMotifMatchRegionMatchBeginMF_04150220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150213 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150221 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150210, 1, (STRLEN(?templateMotifCigarP32277MF_04150210) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150210, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP32277211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150212, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150212) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150212, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150212) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) . BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_04150213) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs2t224) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP32277230 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277232 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150225 . ?templateMotifSequenceMatchRegionP32277230 faldo:begin ?templateMotifSequenceMatchBeginP32277231 . ?templateMotifSequenceMatchBeginP32277231 faldo:position ?templateMotifSequenceMatchBeginPositionP32277226 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277232 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150236 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150227 . ?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150235 . ?targetMotifMatchRegionMatchBeginMF_04150235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150228 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150236 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150225, 1, (STRLEN(?templateMotifCigarP32277MF_04150225) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150225, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP32277226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150227, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150227) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150227, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150227) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) . BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_04150228) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs2t239) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP32277245 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277247 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150240 . ?templateMotifSequenceMatchRegionP32277245 faldo:begin ?templateMotifSequenceMatchBeginP32277246 . ?templateMotifSequenceMatchBeginP32277246 faldo:position ?templateMotifSequenceMatchBeginPositionP32277241 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277247 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150251 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150242 . ?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150250 . ?targetMotifMatchRegionMatchBeginMF_04150250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150243 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150251 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150240, 1, (STRLEN(?templateMotifCigarP32277MF_04150240) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150240, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionP32277241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150242, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150242) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150242, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150242) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) . BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_04150243) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs2t254) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP32277260 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277262 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150255 . ?templateMotifSequenceMatchRegionP32277260 faldo:begin ?templateMotifSequenceMatchBeginP32277261 . ?templateMotifSequenceMatchBeginP32277261 faldo:position ?templateMotifSequenceMatchBeginPositionP32277256 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277262 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150266 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150257 . ?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150265 . ?targetMotifMatchRegionMatchBeginMF_04150265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150258 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150266 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:10663 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150255, 1, (STRLEN(?templateMotifCigarP32277MF_04150255) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150255, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP32277256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150257, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150257) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150257, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150257) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) . BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_04150258) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs3t269) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'I')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP32277275 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277277 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150270 . ?templateMotifSequenceMatchRegionP32277275 faldo:begin ?templateMotifSequenceMatchBeginP32277276 . ?templateMotifSequenceMatchBeginP32277276 faldo:position ?templateMotifSequenceMatchBeginPositionP32277271 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277277 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150281 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150272 . ?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150280 . ?targetMotifMatchRegionMatchBeginMF_04150280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150273 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150281 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:10663 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150270, 1, (STRLEN(?templateMotifCigarP32277MF_04150270) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150270, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP32277271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150272, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150272) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150272, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150272) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) . BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_04150273) - 1) AS ?thisPositionOn87) . BIND(?thisPositionOn87 AS ?thisPositionOn88) . BIND(?this AS ?pfs3t284) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'L')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP32277290 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277292 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150285 . ?templateMotifSequenceMatchRegionP32277290 faldo:begin ?templateMotifSequenceMatchBeginP32277291 . ?templateMotifSequenceMatchBeginP32277291 faldo:position ?templateMotifSequenceMatchBeginPositionP32277286 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277292 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150296 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150287 . ?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150295 . ?targetMotifMatchRegionMatchBeginMF_04150295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150288 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150296 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:10663 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150285, 1, (STRLEN(?templateMotifCigarP32277MF_04150285) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150285, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP32277286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150287, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150287) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150287, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150287) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) . BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_04150288) - 1) AS ?thisPositionOn94) . BIND(?thisPositionOn94 AS ?thisPositionOn95) . BIND(?this AS ?pfs3t299) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a90')) AS ?annotation90) . BIND(?this AS ?pfs89) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch304 faldo:location ?templateMotifSequenceMatchRegionP32277305 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277307 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150300 . ?templateMotifSequenceMatchRegionP32277305 faldo:begin ?templateMotifSequenceMatchBeginP32277306 . ?templateMotifSequenceMatchBeginP32277306 faldo:position ?templateMotifSequenceMatchBeginPositionP32277301 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277307 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch308 faldo:location ?targetMotifMatchRegionMatch309 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150311 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150302 . ?targetMotifMatchRegionMatch309 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150310 . ?targetMotifMatchRegionMatchBeginMF_04150310 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150303 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150311 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:10663 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150300, 1, (STRLEN(?templateMotifCigarP32277MF_04150300) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150300, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionP32277301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150302, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150302) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150302, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150302) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) . BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_04150303) - 1) AS ?thisPositionOn101) . BIND(?thisPositionOn101 AS ?thisPositionOn102) . BIND(?this AS ?pfs3t314) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a97')) AS ?annotation97) . BIND(?this AS ?pfs96) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP32277320 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277322 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150315 . ?templateMotifSequenceMatchRegionP32277320 faldo:begin ?templateMotifSequenceMatchBeginP32277321 . ?templateMotifSequenceMatchBeginP32277321 faldo:position ?templateMotifSequenceMatchBeginPositionP32277316 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277322 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150326 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150317 . ?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150325 . ?targetMotifMatchRegionMatchBeginMF_04150325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150318 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150326 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:10663 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150315, 1, (STRLEN(?templateMotifCigarP32277MF_04150315) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150315, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionP32277316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150317, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150317) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150317, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150317) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) . BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_04150318) - 1) AS ?thisPositionOn107) . BIND(?thisPositionOn107 AS ?thisPositionOn108) . BIND(?this AS ?pfs3t329) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb105) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse106) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a104')) AS ?annotation104) . BIND(?this AS ?pfs103) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP32277335 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32277337 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32277MF_04150330 . ?templateMotifSequenceMatchRegionP32277335 faldo:begin ?templateMotifSequenceMatchBeginP32277336 . ?templateMotifSequenceMatchBeginP32277336 faldo:position ?templateMotifSequenceMatchBeginPositionP32277331 ; faldo:reference isoform:P32277-1 . ?templateMotifSequenceProfileAlignmentOperationP32277337 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04150341 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32277MF_04150332 . ?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04150340 . ?targetMotifMatchRegionMatchBeginMF_04150340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04150333 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04150341 edam:has_input signature:MF_04150 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:10663 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32277MF_04150330, 1, (STRLEN(?templateMotifCigarP32277MF_04150330) - STRLEN(REPLACE(?templateMotifCigarP32277MF_04150330, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionP32277331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32277MF_04150332, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150332) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32277MF_04150332, 1, (STRLEN(?targetMotifMatchCigarP32277MF_04150332) - STRLEN(REPLACE(?targetMotifMatchCigarP32277MF_04150332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) . BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_04150333) - 1) AS ?thisPositionOn113) . BIND(?thisPositionOn113 AS ?thisPositionOn114) . BIND(?this AS ?pfs3t344) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb111) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse112) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_04150a110')) AS ?annotation110) . BIND(?this AS ?pfs109) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag345) . BIND(URI(CONCAT(STR(?this), '#MF_04150a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_04150a5')) AS ?name5) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag345, ?UNBOUND_VARIABLE) AS ?case3) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag346) . BIND(URI(CONCAT(STR(?this), '#MF_04150a7')) AS ?name7) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag346, ?UNBOUND_VARIABLE) AS ?case6) . }