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HAMAP families
The HAMAP families are a collection of orthologous microbial families manually created by expert curators. They are written in the UniRule format and contain data which is used to annotate bacterial, archaeal and plastid-encoded proteins in the UniProtKB/Swiss-Prot format [More details].

UniProt release 2012_05 of 16-May-2012

HAMAP families access
 e.g: MF_01200, zinc
The wildcard * is supported.

Sample family: MF_00500 (rpsT)
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HAMAP tools
HAMAP-Scan - advanced scan:
Scan several sequences or a whole genome (all ORFs) against the HAMAP families, with partial or complete annotation in the UniProtKB/Swiss-Prot format.
Summary Statistics
Number of HAMAP families 1710
Number of alignments 1742
Number of profiles 1770
Coverage of UniProtKB entries 2100728
Number of families by taxonomic scopes
  • Archaea: 599
  • Bacteria: 1520
  • Plastid: 158
  • Archaea only: 188
  • Archaea+Bacteria: 365
  • Archaea+Bacteria+Plastid: 46
  • Bacteria only: 999
  • Bacteria+Plastid: 110
  • Plastid only: 2