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HAMAP families
The HAMAP families are a collection of orthologous microbial families manually created by expert curators. They are written in the UniRule format and contain data which is used to annotate bacterial, archaeal and plastid-encoded proteins in the UniProt/Swiss-Prot format [More details].

Uniprot release 2012_01 of 25-Jan-2012

HAMAP families access
 e.g: MF_01200, zinc
The wildcard * is supported.

Sample family: MF_00834 (bioA)
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Hamap tools
HAMAP-Scan - advanced scan:
Scan several sequences or a whole genome (all ORFs) against the HAMAP families, with partial or complete annotation in the UniProtKB/Swiss-Prot format.
Summary Statistics
Number of HAMAP families 1693
Number of alignments 1725
Number of profiles 1753
Coverage of UniProtKB/Swiss-Prot entries 1786794
Number of families by taxonomic scopes
  • Archaea: 589
  • Bacteria: 1502
  • Plastid: 158
  • Archaea only: 189
  • Archaea+Bacteria: 354
  • Archaea+Bacteria+Plastid: 46
  • Bacteria only: 992
  • Bacteria+Plastid: 110
  • Plastid only: 2