| http://purl.uniprot.org/unirules/MF_00061#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:23824 up:source unirule:MF_00061 .
_:23825 up:source unirule:MF_00061 .
_:23826 up:source unirule:MF_00061 .
_:23827 up:source unirule:MF_00061 .
_:23828 up:source unirule:MF_00061 .
_:23829 up:source unirule:MF_00061 .
_:23830 up:source unirule:MF_00061 .
_:23831 up:source unirule:MF_00061 .
_:23832 up:source unirule:MF_00061 .
_:23833 up:source unirule:MF_00061 .
_:23834 up:source unirule:MF_00061 .
_:23835 up:source unirule:MF_00061 .
_:23836 up:source unirule:MF_00061 .
_:23837 up:source unirule:MF_00061 .
_:23838 up:source unirule:MF_00061 .
_:23839 up:source unirule:MF_00061 .
_:23840 up:source unirule:MF_00061 .
_:23841 up:source unirule:MF_00061 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0005524 ,
GO:0050515 ,
keyword:418 ,
keyword:547 ,
keyword:67 ,
keyword:808 .
?annotation0 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the GHMP kinase family. IspE subfamily.' .
?case5 up:alternativeName ?name7 ;
up:recommendedName ?name6 .
?name6 up:ecName '2.7.1.148' ;
up:fullName 'Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase' ;
up:shortName 'CMK' ;
rdf:type up:Structured_Name .
?name7 up:fullName "4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase" ;
rdf:type up:Structured_Name .
?case8 up:alternativeName ?name10 ;
up:classifiedWith GO:0019288 ,
keyword:414 ;
up:recommendedName ?name9 .
?name9 up:ecName '2.7.1.148' ;
up:fullName '4-diphosphocytidyl-2-C-methyl-D-erythritol kinase' ;
up:shortName 'CMK' ;
rdf:type up:Structured_Name .
?name10 up:fullName "4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase" ;
rdf:type up:Structured_Name .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:30616 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Active_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
_:23842 a rdf:Statement ;
up:attribution _:23824 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:23843 a rdf:Statement ;
up:attribution _:23825 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:23844 a rdf:Statement ;
up:attribution _:23826 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:23845 a rdf:Statement ;
up:attribution _:23827 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:23846 a rdf:Statement ;
up:attribution _:23828 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:23847 a rdf:Statement ;
up:attribution _:23829 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:23848 a rdf:Statement ;
up:attribution _:23830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:23849 a rdf:Statement ;
up:attribution _:23831 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050515 .
_:23850 a rdf:Statement ;
up:attribution _:23832 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:23851 a rdf:Statement ;
up:attribution _:23833 ;
rdf:subject ?case5 ;
rdf:predicate up:recommendedName ;
rdf:object ?name6 .
_:23852 a rdf:Statement ;
up:attribution _:23834 ;
rdf:subject ?case5 ;
rdf:predicate up:alternativeName ;
rdf:object ?name7 .
_:23853 a rdf:Statement ;
up:attribution _:23835 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:23854 a rdf:Statement ;
up:attribution _:23836 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:23855 a rdf:Statement ;
up:attribution _:23837 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:414 .
_:23856 a rdf:Statement ;
up:attribution _:23838 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019288 .
_:23857 a rdf:Statement ;
up:source unirule:MF_00061 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:23858 a rdf:Statement ;
up:attribution _:23839 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:23859 a rdf:Statement ;
up:source unirule:MF_00061 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:23860 a rdf:Statement ;
up:attribution _:23840 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:23861 a rdf:Statement ;
up:source unirule:MF_00061 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:23862 a rdf:Statement ;
up:attribution _:23841 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00061
#Rule MF_00061 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-03-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00061 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00061a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_00061a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00061a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch34 faldo:location ?templateMotifSequenceMatchRegionQ8FI0435 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FI0437 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FI04MF_0006130 .
?templateMotifSequenceMatchRegionQ8FI0435 faldo:begin ?templateMotifSequenceMatchBeginQ8FI0436 .
?templateMotifSequenceMatchBeginQ8FI0436 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FI0431 ;
faldo:reference isoform:Q8FI04-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FI0437 edam:has_input signature:MF_00061 ;
rdf:type edam:operation_0300 .
?targetMotifMatch38 faldo:location ?targetMotifMatchRegionMatch39 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0006141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FI04MF_0006132 .
?targetMotifMatchRegionMatch39 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0006140 .
?targetMotifMatchRegionMatchBeginMF_0006140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0006133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0006141 edam:has_input signature:MF_00061 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FI04MF_0006130, 1, (STRLEN(?templateMotifCigarQ8FI04MF_0006130) - STRLEN(REPLACE(?templateMotifCigarQ8FI04MF_0006130, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionQ8FI0431) + 1)), '}'), '')))), '[a-z]', '')) AS ?step142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FI04MF_0006132, 1, (STRLEN(?targetMotifMatchCigarQ8FI04MF_0006132) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FI04MF_0006132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FI04MF_0006132, 1, (STRLEN(?targetMotifMatchCigarQ8FI04MF_0006132) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FI04MF_0006132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), '')))), '[^-]', ''))) AS ?step243) .
BIND(((?step243 + ?targetMotifMatchRegionMatchBeginPositionMF_0006133) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FI04MF_0006130, 1, (STRLEN(?templateMotifCigarQ8FI04MF_0006130) - STRLEN(REPLACE(?templateMotifCigarQ8FI04MF_0006130, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionQ8FI0431) + 1)), '}'), '')))), '[a-z]', '')) AS ?step144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FI04MF_0006132, 1, (STRLEN(?targetMotifMatchCigarQ8FI04MF_0006132) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FI04MF_0006132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FI04MF_0006132, 1, (STRLEN(?targetMotifMatchCigarQ8FI04MF_0006132) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FI04MF_0006132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), '')))), '[^-]', ''))) AS ?step245) .
BIND(((?step245 + ?targetMotifMatchRegionMatchBeginPositionMF_0006133) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('[PL][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][GSA]G[LIMFV][GA][GS][GAD]S[STAG]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00061a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionQ8FI0452 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FI0454 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FI04MF_0006147 .
?templateMotifSequenceMatchRegionQ8FI0452 faldo:begin ?templateMotifSequenceMatchBeginQ8FI0453 .
?templateMotifSequenceMatchBeginQ8FI0453 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FI0448 ;
faldo:reference isoform:Q8FI04-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FI0454 edam:has_input signature:MF_00061 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0006158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FI04MF_0006149 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0006157 .
?targetMotifMatchRegionMatchBeginMF_0006157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0006150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0006158 edam:has_input signature:MF_00061 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FI04MF_0006147, 1, (STRLEN(?templateMotifCigarQ8FI04MF_0006147) - STRLEN(REPLACE(?templateMotifCigarQ8FI04MF_0006147, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ8FI0448) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FI04MF_0006149, 1, (STRLEN(?targetMotifMatchCigarQ8FI04MF_0006149) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FI04MF_0006149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FI04MF_0006149, 1, (STRLEN(?targetMotifMatchCigarQ8FI04MF_0006149) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FI04MF_0006149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0006150) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00061a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionQ8FI0467 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FI0469 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FI04MF_0006162 .
?templateMotifSequenceMatchRegionQ8FI0467 faldo:begin ?templateMotifSequenceMatchBeginQ8FI0468 .
?templateMotifSequenceMatchBeginQ8FI0468 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FI0463 ;
faldo:reference isoform:Q8FI04-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FI0469 edam:has_input signature:MF_00061 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0006173 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FI04MF_0006164 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0006172 .
?targetMotifMatchRegionMatchBeginMF_0006172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0006165 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0006173 edam:has_input signature:MF_00061 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FI04MF_0006162, 1, (STRLEN(?templateMotifCigarQ8FI04MF_0006162) - STRLEN(REPLACE(?templateMotifCigarQ8FI04MF_0006162, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionQ8FI0463) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FI04MF_0006164, 1, (STRLEN(?targetMotifMatchCigarQ8FI04MF_0006164) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FI04MF_0006164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FI04MF_0006164, 1, (STRLEN(?targetMotifMatchCigarQ8FI04MF_0006164) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FI04MF_0006164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0006165) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00061a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon77 {taxon:1279 taxon:1301}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon77 .
BIND(?this AS ?case5) .
BIND(URI(CONCAT(STR(?this), '#MF_00061a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_00061a7')) AS ?name7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon78 {taxon:1279 taxon:1301}
?thisOrganism rdfs:subClassOf+ ?supertaxon78 .
})) .
BIND(?this AS ?case8) .
BIND(URI(CONCAT(STR(?this), '#MF_00061a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_00061a10')) AS ?name10) .
}
}
"xsd:string |
