| http://purl.uniprot.org/unirules/MF_00065#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:25435 up:source unirule:MF_00065 .
_:25436 up:source unirule:MF_00065 .
_:25437 up:source unirule:MF_00065 .
_:25438 up:source unirule:MF_00065 .
_:25439 up:source unirule:MF_00065 .
_:25440 up:source unirule:MF_00065 .
_:25441 up:source unirule:MF_00065 .
_:25442 up:source unirule:MF_00065 .
_:25443 up:source unirule:MF_00065 .
_:25444 up:source unirule:MF_00065 .
_:25445 up:source unirule:MF_00065 .
_:25446 up:source unirule:MF_00065 .
_:25447 up:source unirule:MF_00065 .
_:25448 up:source unirule:MF_00065 .
_:25449 up:source unirule:MF_00065 .
_:25450 up:source unirule:MF_00065 .
_:25451 up:source unirule:MF_00065 .
_:25452 up:source unirule:MF_00065 .
_:25453 up:source unirule:MF_00065 .
_:25454 up:source unirule:MF_00065 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0000103 ,
GO:0004020 ,
GO:0005524 ,
GO:0070814 ,
keyword:418 ,
keyword:547 ,
keyword:597 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.25' ;
up:fullName 'Adenylyl-sulfate kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'APS kinase' ;
rdf:type up:Structured_Name .
?name2 up:fullName "ATP adenosine-5'-phosphosulfate 3'-phosphotransferase" ;
rdf:type up:Structured_Name .
?name3 up:fullName "Adenosine-5'-phosphosulfate kinase" ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'cysC' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the synthesis of activated sulfate.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 2/3.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the APS kinase family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Phosphoserine intermediate' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
_:25455 a rdf:Statement ;
up:attribution _:25435 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:25456 a rdf:Statement ;
up:attribution _:25436 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:25457 a rdf:Statement ;
up:attribution _:25437 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:25458 a rdf:Statement ;
up:attribution _:25438 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:25459 a rdf:Statement ;
up:attribution _:25439 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:25460 a rdf:Statement ;
up:attribution _:25440 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:25461 a rdf:Statement ;
up:attribution _:25441 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:25462 a rdf:Statement ;
up:attribution _:25442 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:25463 a rdf:Statement ;
up:attribution _:25443 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:25464 a rdf:Statement ;
up:attribution _:25444 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:25465 a rdf:Statement ;
up:attribution _:25445 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:25466 a rdf:Statement ;
up:attribution _:25446 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:25467 a rdf:Statement ;
up:attribution _:25447 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:25468 a rdf:Statement ;
up:attribution _:25448 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:25469 a rdf:Statement ;
up:attribution _:25449 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004020 .
_:25470 a rdf:Statement ;
up:attribution _:25450 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:25471 a rdf:Statement ;
up:attribution _:25451 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000103 .
_:25472 a rdf:Statement ;
up:attribution _:25452 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070814 .
_:25473 a rdf:Statement ;
up:source unirule:MF_00065 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:25474 a rdf:Statement ;
up:attribution _:25453 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:25475 a rdf:Statement ;
up:source unirule:MF_00065 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:25476 a rdf:Statement ;
up:attribution _:25454 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00065
#Rule MF_00065 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-05-14
VALUES ?supertaxon23 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00065 .
?thisOrganism rdfs:subClassOf+ ?supertaxon23 .
BIND(URI(CONCAT(STR(?this), '#MF_00065a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00065a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00065a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00065a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_00065a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00065a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00065a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00065a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch28 faldo:location ?templateMotifSequenceMatchRegionP0A6J129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6J131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6J1MF_0006524 .
?templateMotifSequenceMatchRegionP0A6J129 faldo:begin ?templateMotifSequenceMatchBeginP0A6J130 .
?templateMotifSequenceMatchBeginP0A6J130 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6J125 ;
faldo:reference isoform:P0A6J1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6J131 edam:has_input signature:MF_00065 ;
rdf:type edam:operation_0300 .
?targetMotifMatch32 faldo:location ?targetMotifMatchRegionMatch33 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0006535 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6J1MF_0006526 .
?targetMotifMatchRegionMatch33 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0006534 .
?targetMotifMatchRegionMatchBeginMF_0006534 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0006527 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0006535 edam:has_input signature:MF_00065 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6J1MF_0006524, 1, (STRLEN(?templateMotifCigarP0A6J1MF_0006524) - STRLEN(REPLACE(?templateMotifCigarP0A6J1MF_0006524, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP0A6J125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6J1MF_0006526, 1, (STRLEN(?targetMotifMatchCigarP0A6J1MF_0006526) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6J1MF_0006526, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6J1MF_0006526, 1, (STRLEN(?targetMotifMatchCigarP0A6J1MF_0006526) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6J1MF_0006526, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), '')))), '[^-]', ''))) AS ?step237) .
BIND(((?step237 + ?targetMotifMatchRegionMatchBeginPositionMF_0006527) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6J1MF_0006524, 1, (STRLEN(?templateMotifCigarP0A6J1MF_0006524) - STRLEN(REPLACE(?templateMotifCigarP0A6J1MF_0006524, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP0A6J125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6J1MF_0006526, 1, (STRLEN(?targetMotifMatchCigarP0A6J1MF_0006526) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6J1MF_0006526, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6J1MF_0006526, 1, (STRLEN(?targetMotifMatchCigarP0A6J1MF_0006526) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6J1MF_0006526, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0006527) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00065a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP0A6J146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6J148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6J1MF_0006541 .
?templateMotifSequenceMatchRegionP0A6J146 faldo:begin ?templateMotifSequenceMatchBeginP0A6J147 .
?templateMotifSequenceMatchBeginP0A6J147 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6J142 ;
faldo:reference isoform:P0A6J1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6J148 edam:has_input signature:MF_00065 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0006552 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6J1MF_0006543 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0006551 .
?targetMotifMatchRegionMatchBeginMF_0006551 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0006544 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0006552 edam:has_input signature:MF_00065 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6J1MF_0006541, 1, (STRLEN(?templateMotifCigarP0A6J1MF_0006541) - STRLEN(REPLACE(?templateMotifCigarP0A6J1MF_0006541, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP0A6J142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6J1MF_0006543, 1, (STRLEN(?targetMotifMatchCigarP0A6J1MF_0006543) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6J1MF_0006543, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6J1MF_0006543, 1, (STRLEN(?targetMotifMatchCigarP0A6J1MF_0006543) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6J1MF_0006543, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0006544) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00065a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
}
"xsd:string |
