| http://purl.uniprot.org/unirules/MF_00101#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:39352 up:source unirule:MF_00101 .
_:39353 up:source unirule:MF_00101 .
_:39354 up:source unirule:MF_00101 .
_:39355 up:source unirule:MF_00101 .
_:39356 up:source unirule:MF_00101 .
_:39357 up:source unirule:MF_00101 .
_:39358 up:source unirule:MF_00101 .
_:39359 up:source unirule:MF_00101 .
_:39360 up:source unirule:MF_00101 .
_:39361 up:source unirule:MF_00101 .
_:39362 up:source unirule:MF_00101 .
_:39363 up:source unirule:MF_00101 .
_:39364 up:source unirule:MF_00101 .
_:39365 up:source unirule:MF_00101 .
_:39366 up:source unirule:MF_00101 .
_:39367 up:source unirule:MF_00101 .
_:39368 up:source unirule:MF_00101 .
_:39369 up:source unirule:MF_00101 .
_:39370 up:source unirule:MF_00101 .
_:39371 up:source unirule:MF_00101 .
_:39372 up:source unirule:MF_00101 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0006633 ,
GO:0008897 ,
keyword:275 ,
keyword:276 ,
keyword:443 ,
keyword:444 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.8.7' ;
up:fullName 'Holo-[acyl-carrier-protein] synthase' ;
up:shortName 'Holo-ACP synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName "4'-phosphopantetheinyl transferase AcpS" ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'acpS' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the P-Pant transferase superfamily. AcpS family.' .
?case9 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:18420 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:18420 .
_:39373 a rdf:Statement ;
up:attribution _:39352 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:39374 a rdf:Statement ;
up:attribution _:39353 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:39375 a rdf:Statement ;
up:attribution _:39354 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:39376 a rdf:Statement ;
up:attribution _:39355 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:39377 a rdf:Statement ;
up:attribution _:39356 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:39378 a rdf:Statement ;
up:attribution _:39357 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:39379 a rdf:Statement ;
up:attribution _:39358 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:39380 a rdf:Statement ;
up:attribution _:39359 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:39381 a rdf:Statement ;
up:attribution _:39360 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:275 .
_:39382 a rdf:Statement ;
up:attribution _:39361 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:276 .
_:39383 a rdf:Statement ;
up:attribution _:39362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:39384 a rdf:Statement ;
up:attribution _:39363 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:39385 a rdf:Statement ;
up:attribution _:39364 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:39386 a rdf:Statement ;
up:attribution _:39365 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008897 .
_:39387 a rdf:Statement ;
up:attribution _:39366 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006633 .
_:39388 a rdf:Statement ;
up:attribution _:39367 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:39389 a rdf:Statement ;
up:attribution _:39368 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:39390 a rdf:Statement ;
up:attribution _:39369 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:39391 a rdf:Statement ;
up:attribution _:39370 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:39392 a rdf:Statement ;
up:source unirule:MF_00101 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:39393 a rdf:Statement ;
up:attribution _:39371 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:39394 a rdf:Statement ;
up:source unirule:MF_00101 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:39395 a rdf:Statement ;
up:attribution _:39372 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00101
#Rule MF_00101 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00101 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00101a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00101a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00101a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00101a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00101a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00101a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch28 faldo:location ?templateMotifSequenceMatchRegionP2422429 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2422431 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24224MF_0010124 .
?templateMotifSequenceMatchRegionP2422429 faldo:begin ?templateMotifSequenceMatchBeginP2422430 .
?templateMotifSequenceMatchBeginP2422430 faldo:position ?templateMotifSequenceMatchBeginPositionP2422425 ;
faldo:reference isoform:P24224-1 .
?templateMotifSequenceProfileAlignmentOperationP2422431 edam:has_input signature:MF_00101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch32 faldo:location ?targetMotifMatchRegionMatch33 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0010135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24224MF_0010126 .
?targetMotifMatchRegionMatch33 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0010134 .
?targetMotifMatchRegionMatchBeginMF_0010134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0010127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0010135 edam:has_input signature:MF_00101 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24224MF_0010124, 1, (STRLEN(?templateMotifCigarP24224MF_0010124) - STRLEN(REPLACE(?templateMotifCigarP24224MF_0010124, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP2422425) + 1)), '}'), '')))), '[a-z]', '')) AS ?step136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24224MF_0010126, 1, (STRLEN(?targetMotifMatchCigarP24224MF_0010126) - STRLEN(REPLACE(?targetMotifMatchCigarP24224MF_0010126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24224MF_0010126, 1, (STRLEN(?targetMotifMatchCigarP24224MF_0010126) - STRLEN(REPLACE(?targetMotifMatchCigarP24224MF_0010126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), '')))), '[^-]', ''))) AS ?step237) .
BIND(((?step237 + ?targetMotifMatchRegionMatchBeginPositionMF_0010127) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('[EQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00101a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionP2422444 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2422446 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24224MF_0010139 .
?templateMotifSequenceMatchRegionP2422444 faldo:begin ?templateMotifSequenceMatchBeginP2422445 .
?templateMotifSequenceMatchBeginP2422445 faldo:position ?templateMotifSequenceMatchBeginPositionP2422440 ;
faldo:reference isoform:P24224-1 .
?templateMotifSequenceProfileAlignmentOperationP2422446 edam:has_input signature:MF_00101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0010150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24224MF_0010141 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0010149 .
?targetMotifMatchRegionMatchBeginMF_0010149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0010142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0010150 edam:has_input signature:MF_00101 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24224MF_0010139, 1, (STRLEN(?templateMotifCigarP24224MF_0010139) - STRLEN(REPLACE(?templateMotifCigarP24224MF_0010139, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP2422440) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24224MF_0010141, 1, (STRLEN(?targetMotifMatchCigarP24224MF_0010141) - STRLEN(REPLACE(?targetMotifMatchCigarP24224MF_0010141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24224MF_0010141, 1, (STRLEN(?targetMotifMatchCigarP24224MF_0010141) - STRLEN(REPLACE(?targetMotifMatchCigarP24224MF_0010141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0010142) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs2t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00101a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag54) .
}
BIND(IF((BOUND(?tagFT_1) || BOUND(?tagFT_2)), ?caseWithTag54, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
