| http://purl.uniprot.org/unirules/MF_00139#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:54509 up:source unirule:MF_00139 .
_:54510 up:ecName '2.1.2.3' ;
up:fullName 'Phosphoribosylaminoimidazolecarboxamide formyltransferase' ;
rdf:type up:Structured_Name .
_:54511 up:fullName 'AICAR transformylase' ;
rdf:type up:Structured_Name .
_:54512 up:source unirule:MF_00139 .
_:54513 up:ecName '3.5.4.10' ;
up:fullName 'IMP cyclohydrolase' ;
rdf:type up:Structured_Name .
_:54514 up:fullName 'ATIC' ;
rdf:type up:Structured_Name .
_:54515 up:fullName 'IMP synthase' ;
rdf:type up:Structured_Name .
_:54516 up:fullName 'Inosinicase' ;
rdf:type up:Structured_Name .
_:54517 up:source unirule:MF_00139 .
_:54518 up:source unirule:MF_00139 .
_:54519 up:source unirule:MF_00139 .
_:54520 up:source unirule:MF_00139 .
_:54521 up:source unirule:MF_00139 .
_:54522 up:source unirule:MF_00139 .
_:54523 up:source unirule:MF_00139 .
_:54524 up:source unirule:MF_00139 .
_:54525 up:source unirule:MF_00139 .
_:54526 up:source unirule:MF_00139 .
_:54527 up:source unirule:MF_00139 .
_:54528 up:source unirule:MF_00139 .
_:54529 up:source unirule:MF_00139 .
_:54530 up:source unirule:MF_00139 .
_:54531 up:source unirule:MF_00139 .
_:54532 up:source unirule:MF_00139 .
_:54533 up:source unirule:MF_00139 .
?this up:annotation ?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0003937 ,
GO:0004643 ,
GO:0006189 ,
keyword:378 ,
keyword:511 ,
keyword:658 ,
keyword:808 ;
up:domain ?namedpart1 ,
?namedpart2 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Bifunctional purine biosynthesis protein PurH' ;
rdf:type up:Structured_Name .
?namedpart1 up:alternativeName _:54511 ;
up:recommendedName _:54510 .
?namedpart2 up:alternativeName _:54514 ,
_:54515 ,
_:54516 ;
up:recommendedName _:54513 .
?gene3 skos:prefLabel 'purH' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; IMP biosynthesis via de novo pathway; 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide (10-formyl THF route): step 1/1.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; IMP biosynthesis via de novo pathway; IMP from 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide: step 1/1.' .
?annotation10 a up:Domain_Annotation ;
rdfs:comment 'The IMP cyclohydrolase activity resides in the N-terminal region.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PurH family.' .
?case12 up:classifiedWith keyword:7 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
_:54534 a rdf:Statement ;
up:attribution _:54509 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:54535 a rdf:Statement ;
up:attribution _:54512 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:54536 a rdf:Statement ;
up:attribution _:54517 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:54537 a rdf:Statement ;
up:attribution _:54518 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:54538 a rdf:Statement ;
up:attribution _:54519 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:54539 a rdf:Statement ;
up:attribution _:54520 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:54540 a rdf:Statement ;
up:attribution _:54521 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:54541 a rdf:Statement ;
up:attribution _:54522 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:54542 a rdf:Statement ;
up:attribution _:54523 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:54543 a rdf:Statement ;
up:attribution _:54524 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:54544 a rdf:Statement ;
up:attribution _:54525 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:54545 a rdf:Statement ;
up:attribution _:54526 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:54546 a rdf:Statement ;
up:attribution _:54527 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:658 .
_:54547 a rdf:Statement ;
up:attribution _:54528 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:54548 a rdf:Statement ;
up:attribution _:54529 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003937 .
_:54549 a rdf:Statement ;
up:attribution _:54530 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004643 .
_:54550 a rdf:Statement ;
up:attribution _:54531 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006189 .
_:54551 a rdf:Statement ;
up:attribution _:54532 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:54552 a rdf:Statement ;
up:source unirule:MF_00139 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:54553 a rdf:Statement ;
up:attribution _:54533 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00139
#Rule MF_00139 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00139 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00139a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00139a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_00139a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_00139a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00139a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00139a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00139a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00139a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00139a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP1563925 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1563927 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15639MF_0013920 .
?templateMotifSequenceMatchRegionP1563925 faldo:begin ?templateMotifSequenceMatchBeginP1563926 .
?templateMotifSequenceMatchBeginP1563926 faldo:position ?templateMotifSequenceMatchBeginPositionP1563921 ;
faldo:reference isoform:P15639-1 .
?templateMotifSequenceProfileAlignmentOperationP1563927 edam:has_input signature:MF_00139 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0013931 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15639MF_0013922 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0013930 .
?targetMotifMatchRegionMatchBeginMF_0013930 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0013923 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0013931 edam:has_input signature:MF_00139 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
VALUES ?supertaxon19 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon19 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15639MF_0013920, 1, (STRLEN(?templateMotifCigarP15639MF_0013920) - STRLEN(REPLACE(?templateMotifCigarP15639MF_0013920, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionP1563921) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15639MF_0013922, 1, (STRLEN(?targetMotifMatchCigarP15639MF_0013922) - STRLEN(REPLACE(?targetMotifMatchCigarP15639MF_0013922, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15639MF_0013922, 1, (STRLEN(?targetMotifMatchCigarP15639MF_0013922) - STRLEN(REPLACE(?targetMotifMatchCigarP15639MF_0013922, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0013923) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00139a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:561 .
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:620 .
}
BIND(?this AS ?caseWithTag35) .
}
BIND(IF(BOUND(?tagFT_1), ?caseWithTag35, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
