| http://purl.uniprot.org/unirules/MF_00164#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:65526 up:source unirule:MF_00164 .
_:65527 up:source unirule:MF_00164 .
_:65528 up:source unirule:MF_00164 .
_:65529 up:source unirule:MF_00164 .
_:65530 up:source unirule:MF_00164 .
_:65531 up:source unirule:MF_00164 .
_:65532 up:source unirule:MF_00164 .
_:65533 up:source unirule:MF_00164 .
_:65534 up:source unirule:MF_00164 .
_:65535 up:source unirule:MF_00164 .
_:65536 up:source unirule:MF_00164 .
_:65537 up:source unirule:MF_00164 .
_:65538 up:source unirule:MF_00164 .
_:65539 up:source unirule:MF_00164 .
_:65540 up:source unirule:MF_00164 .
_:65541 up:source unirule:MF_00164 .
_:65542 up:source unirule:MF_00164 .
_:65543 up:source unirule:MF_00164 .
_:65544 up:source unirule:MF_00164 .
_:65545 up:source unirule:MF_00164 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ,
?name4 ,
?name5 ;
up:annotation ?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0004360 ,
GO:0005975 ,
keyword:32 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.6.1.16' ;
up:fullName 'Glutamine--fructose-6-phosphate aminotransferase [isomerizing]' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'D-fructose-6-phosphate amidotransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'GFAT' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Glucosamine-6-phosphate synthase' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'Hexosephosphate aminotransferase' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'L-glutamine--D-fructose-6-phosphate amidotransferase' ;
rdf:type up:Structured_Name .
?gene6 skos:prefLabel 'glmS' .
?annotation7 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.' .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?case11 up:classifiedWith GO:0009507 .
?case12 up:classifiedWith GO:0005737 ,
keyword:963 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile; for GATase activity' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'For Fru-6P isomerization activity' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
_:65546 a rdf:Statement ;
up:attribution _:65526 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:65547 a rdf:Statement ;
up:attribution _:65527 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:65548 a rdf:Statement ;
up:attribution _:65528 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:65549 a rdf:Statement ;
up:attribution _:65529 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:65550 a rdf:Statement ;
up:attribution _:65530 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:65551 a rdf:Statement ;
up:attribution _:65531 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:65552 a rdf:Statement ;
up:attribution _:65532 ;
rdf:subject ?gene6 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene6 .
_:65553 a rdf:Statement ;
up:attribution _:65533 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:65554 a rdf:Statement ;
up:attribution _:65534 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:65555 a rdf:Statement ;
up:attribution _:65535 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:65556 a rdf:Statement ;
up:attribution _:65536 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:65557 a rdf:Statement ;
up:attribution _:65537 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:32 .
_:65558 a rdf:Statement ;
up:attribution _:65538 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004360 .
_:65559 a rdf:Statement ;
up:attribution _:65539 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005975 .
_:65560 a rdf:Statement ;
up:attribution _:65540 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:65561 a rdf:Statement ;
up:attribution _:65541 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:65562 a rdf:Statement ;
up:attribution _:65542 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:65563 a rdf:Statement ;
up:source unirule:MF_00164 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:65564 a rdf:Statement ;
up:attribution _:65543 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:65565 a rdf:Statement ;
up:source unirule:MF_00164 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:65566 a rdf:Statement ;
up:attribution _:65544 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:65567 a rdf:Statement ;
up:source unirule:MF_00164 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:65568 a rdf:Statement ;
up:attribution _:65545 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00164
#Rule MF_00164 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
{
VALUES ?supertaxon31 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00164 .
?thisOrganism rdfs:subClassOf+ ?supertaxon31 .
} UNION {
?this rdfs:seeAlso signature:MF_00164 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_00164a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch36 faldo:location ?templateMotifSequenceMatchRegionP1716937 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1716939 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17169MF_0016432 .
?templateMotifSequenceMatchRegionP1716937 faldo:begin ?templateMotifSequenceMatchBeginP1716938 .
?templateMotifSequenceMatchBeginP1716938 faldo:position ?templateMotifSequenceMatchBeginPositionP1716933 ;
faldo:reference isoform:P17169-1 .
?templateMotifSequenceProfileAlignmentOperationP1716939 edam:has_input signature:MF_00164 ;
rdf:type edam:operation_0300 .
?targetMotifMatch40 faldo:location ?targetMotifMatchRegionMatch41 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0016443 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17169MF_0016434 .
?targetMotifMatchRegionMatch41 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0016442 .
?targetMotifMatchRegionMatchBeginMF_0016442 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0016435 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0016443 edam:has_input signature:MF_00164 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17169MF_0016432, 1, (STRLEN(?templateMotifCigarP17169MF_0016432) - STRLEN(REPLACE(?templateMotifCigarP17169MF_0016432, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP1716933) + 1)), '}'), '')))), '[a-z]', '')) AS ?step144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17169MF_0016434, 1, (STRLEN(?targetMotifMatchCigarP17169MF_0016434) - STRLEN(REPLACE(?targetMotifMatchCigarP17169MF_0016434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17169MF_0016434, 1, (STRLEN(?targetMotifMatchCigarP17169MF_0016434) - STRLEN(REPLACE(?targetMotifMatchCigarP17169MF_0016434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), '')))), '[^-]', ''))) AS ?step245) .
BIND(((?step245 + ?targetMotifMatchRegionMatchBeginPositionMF_0016435) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP1716952 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1716954 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17169MF_0016447 .
?templateMotifSequenceMatchRegionP1716952 faldo:begin ?templateMotifSequenceMatchBeginP1716953 .
?templateMotifSequenceMatchBeginP1716953 faldo:position ?templateMotifSequenceMatchBeginPositionP1716948 ;
faldo:reference isoform:P17169-1 .
?templateMotifSequenceProfileAlignmentOperationP1716954 edam:has_input signature:MF_00164 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0016458 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17169MF_0016449 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0016457 .
?targetMotifMatchRegionMatchBeginMF_0016457 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0016450 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0016458 edam:has_input signature:MF_00164 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17169MF_0016447, 1, (STRLEN(?templateMotifCigarP17169MF_0016447) - STRLEN(REPLACE(?templateMotifCigarP17169MF_0016447, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP1716948) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17169MF_0016449, 1, (STRLEN(?targetMotifMatchCigarP17169MF_0016449) - STRLEN(REPLACE(?targetMotifMatchCigarP17169MF_0016449, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17169MF_0016449, 1, (STRLEN(?targetMotifMatchCigarP17169MF_0016449) - STRLEN(REPLACE(?targetMotifMatchCigarP17169MF_0016449, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0016450) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP1716967 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1716969 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17169MF_0016462 .
?templateMotifSequenceMatchRegionP1716967 faldo:begin ?templateMotifSequenceMatchBeginP1716968 .
?templateMotifSequenceMatchBeginP1716968 faldo:position ?templateMotifSequenceMatchBeginPositionP1716963 ;
faldo:reference isoform:P17169-1 .
?templateMotifSequenceProfileAlignmentOperationP1716969 edam:has_input signature:MF_00164 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0016473 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17169MF_0016464 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0016472 .
?targetMotifMatchRegionMatchBeginMF_0016472 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0016465 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0016473 edam:has_input signature:MF_00164 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17169MF_0016462, 1, (STRLEN(?templateMotifCigarP17169MF_0016462) - STRLEN(REPLACE(?templateMotifCigarP17169MF_0016462, CONCAT('^(?:-*[^-]){', STR(((604 - ?templateMotifSequenceMatchBeginPositionP1716963) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17169MF_0016464, 1, (STRLEN(?targetMotifMatchCigarP17169MF_0016464) - STRLEN(REPLACE(?targetMotifMatchCigarP17169MF_0016464, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17169MF_0016464, 1, (STRLEN(?targetMotifMatchCigarP17169MF_0016464) - STRLEN(REPLACE(?targetMotifMatchCigarP17169MF_0016464, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0016465) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00164a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case12) .
}
}
"xsd:string |
