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SubjectPredicateObject
http://purl.uniprot.org/unirules/MF_00213#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00213#construct-template-74
http://purl.uniprot.org/unirules/MF_00213#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00213#construct-template-100
http://purl.uniprot.org/unirules/MF_00213#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00213#construct-template-79
http://purl.uniprot.org/unirules/MF_00213#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_00213#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_00213#construct-where-list-0
http://purl.uniprot.org/unirules/MF_00213#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_00213#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00213#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:89539 up:source unirule:MF_00213 . _:89540 up:source unirule:MF_00213 . _:89541 up:source unirule:MF_00213 . _:89542 up:source unirule:MF_00213 . _:89543 up:source unirule:MF_00213 . _:89544 up:source unirule:MF_00213 . _:89545 up:source unirule:MF_00213 . _:89546 up:source unirule:MF_00213 . _:89547 up:source unirule:MF_00213 . _:89548 up:source unirule:MF_00213 . _:89549 up:source unirule:MF_00213 . _:89550 up:source unirule:MF_00213 . _:89551 up:source unirule:MF_00213 . _:89552 up:source unirule:MF_00213 . _:89553 up:source unirule:MF_00213 . ?this up:annotation ?annotation2 , ?annotation3 ; up:classifiedWith GO:0016151 , GO:0036211 , keyword:479 , keyword:533 ; up:recommendedName ?name0 . ?name0 up:fullName 'Hydrogenase maturation factor HypA' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'hypA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.' . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the HypA/HybF family.' . ?case4 up:classifiedWith GO:0008270 , keyword:862 . ?pfs5 up:annotation ?annotation6 , ?annotation12 , ?annotation18 , ?annotation24 . ?annotation6 faldo:begin ?pfsb7 ; faldo:end ?pfse8 ; up:ligand ?ligand9 ; rdf:type up:Binding_Site_Annotation . ?pfsb7 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse8 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?ligand9 rdfs:subClassOf chebi:29105 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; up:ligand ?ligand15 ; rdf:type up:Binding_Site_Annotation . ?pfsb13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?ligand15 rdfs:subClassOf chebi:29105 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; up:ligand ?ligand21 ; rdf:type up:Binding_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand21 rdfs:subClassOf chebi:29105 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:29105 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:49786 . _:89554 a rdf:Statement ; up:attribution _:89539 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:89555 a rdf:Statement ; up:attribution _:89540 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:89556 a rdf:Statement ; up:attribution _:89541 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:89557 a rdf:Statement ; up:attribution _:89542 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:89558 a rdf:Statement ; up:attribution _:89543 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:89559 a rdf:Statement ; up:attribution _:89544 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:533 . _:89560 a rdf:Statement ; up:attribution _:89545 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016151 . _:89561 a rdf:Statement ; up:attribution _:89546 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0036211 . _:89562 a rdf:Statement ; up:attribution _:89547 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:89563 a rdf:Statement ; up:attribution _:89548 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:89564 a rdf:Statement ; up:source unirule:MF_00213 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:89565 a rdf:Statement ; up:attribution _:89549 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:89566 a rdf:Statement ; up:source unirule:MF_00213 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:89567 a rdf:Statement ; up:attribution _:89550 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:89568 a rdf:Statement ; up:source unirule:MF_00213 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:89569 a rdf:Statement ; up:attribution _:89551 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:89570 a rdf:Statement ; up:source unirule:MF_00213 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:89571 a rdf:Statement ; up:attribution _:89552 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:89572 a rdf:Statement ; up:source unirule:MF_00213 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:89573 a rdf:Statement ; up:attribution _:89553 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00213 #Rule MF_00213 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01 VALUES ?supertaxon37 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00213 . ?thisOrganism rdfs:subClassOf+ ?supertaxon37 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_02099 . })) . BIND(URI(CONCAT(STR(?this), '#MF_00213a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00213a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00213a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch42 faldo:location ?templateMotifSequenceMatchRegionP0A0U443 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A0U445 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A0U4MF_0021338 . ?templateMotifSequenceMatchRegionP0A0U443 faldo:begin ?templateMotifSequenceMatchBeginP0A0U444 . ?templateMotifSequenceMatchBeginP0A0U444 faldo:position ?templateMotifSequenceMatchBeginPositionP0A0U439 ; faldo:reference isoform:P0A0U4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A0U445 edam:has_input signature:MF_00213 ; rdf:type edam:operation_0300 . ?targetMotifMatch46 faldo:location ?targetMotifMatchRegionMatch47 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0021349 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A0U4MF_0021340 . ?targetMotifMatchRegionMatch47 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0021348 . ?targetMotifMatchRegionMatchBeginMF_0021348 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0021341 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0021349 edam:has_input signature:MF_00213 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A0U4MF_0021338, 1, (STRLEN(?templateMotifCigarP0A0U4MF_0021338) - STRLEN(REPLACE(?templateMotifCigarP0A0U4MF_0021338, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP0A0U439) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A0U4MF_0021340, 1, (STRLEN(?targetMotifMatchCigarP0A0U4MF_0021340) - STRLEN(REPLACE(?targetMotifMatchCigarP0A0U4MF_0021340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A0U4MF_0021340, 1, (STRLEN(?targetMotifMatchCigarP0A0U4MF_0021340) - STRLEN(REPLACE(?targetMotifMatchCigarP0A0U4MF_0021340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) . BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0021341) - 1) AS ?thisPositionOn10) . BIND(?thisPositionOn10 AS ?thisPositionOn11) . BIND(?this AS ?pfs1t52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb7) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse8) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A0U4MF_0021338, 1, (STRLEN(?templateMotifCigarP0A0U4MF_0021338) - STRLEN(REPLACE(?templateMotifCigarP0A0U4MF_0021338, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP0A0U439) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A0U4MF_0021340, 1, (STRLEN(?targetMotifMatchCigarP0A0U4MF_0021340) - STRLEN(REPLACE(?targetMotifMatchCigarP0A0U4MF_0021340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A0U4MF_0021340, 1, (STRLEN(?targetMotifMatchCigarP0A0U4MF_0021340) - STRLEN(REPLACE(?targetMotifMatchCigarP0A0U4MF_0021340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) . BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0021341) - 1) AS ?thisPositionOn16) . BIND(?thisPositionOn16 AS ?thisPositionOn17) . BIND(?this AS ?pfs1t55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) . FILTER (REGEX('[CH]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A0U4MF_0021338, 1, (STRLEN(?templateMotifCigarP0A0U4MF_0021338) - STRLEN(REPLACE(?templateMotifCigarP0A0U4MF_0021338, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP0A0U439) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A0U4MF_0021340, 1, (STRLEN(?targetMotifMatchCigarP0A0U4MF_0021340) - STRLEN(REPLACE(?targetMotifMatchCigarP0A0U4MF_0021340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A0U4MF_0021340, 1, (STRLEN(?targetMotifMatchCigarP0A0U4MF_0021340) - STRLEN(REPLACE(?targetMotifMatchCigarP0A0U4MF_0021340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) . BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0021341) - 1) AS ?thisPositionOn22) . BIND(?thisPositionOn22 AS ?thisPositionOn23) . BIND(?this AS ?pfs1t58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A0U4MF_0021338, 1, (STRLEN(?templateMotifCigarP0A0U4MF_0021338) - STRLEN(REPLACE(?templateMotifCigarP0A0U4MF_0021338, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP0A0U439) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A0U4MF_0021340, 1, (STRLEN(?targetMotifMatchCigarP0A0U4MF_0021340) - STRLEN(REPLACE(?targetMotifMatchCigarP0A0U4MF_0021340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A0U4MF_0021340, 1, (STRLEN(?targetMotifMatchCigarP0A0U4MF_0021340) - STRLEN(REPLACE(?targetMotifMatchCigarP0A0U4MF_0021340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) . BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0021341) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) . BIND(?this AS ?pfs5) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP0A0U467 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A0U469 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A0U4MF_0021362 . ?templateMotifSequenceMatchRegionP0A0U467 faldo:begin ?templateMotifSequenceMatchBeginP0A0U468 . ?templateMotifSequenceMatchBeginP0A0U468 faldo:position ?templateMotifSequenceMatchBeginPositionP0A0U463 ; faldo:reference isoform:P0A0U4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A0U469 edam:has_input signature:MF_00213 ; rdf:type edam:operation_0300 . ?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0021373 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A0U4MF_0021364 . ?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0021372 . ?targetMotifMatchRegionMatchBeginMF_0021372 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0021365 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0021373 edam:has_input signature:MF_00213 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A0U4MF_0021362, 1, (STRLEN(?templateMotifCigarP0A0U4MF_0021362) - STRLEN(REPLACE(?templateMotifCigarP0A0U4MF_0021362, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP0A0U463) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A0U4MF_0021364, 1, (STRLEN(?targetMotifMatchCigarP0A0U4MF_0021364) - STRLEN(REPLACE(?targetMotifMatchCigarP0A0U4MF_0021364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A0U4MF_0021364, 1, (STRLEN(?targetMotifMatchCigarP0A0U4MF_0021364) - STRLEN(REPLACE(?targetMotifMatchCigarP0A0U4MF_0021364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) . BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0021365) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs2t76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00213a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag77) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag77, ?UNBOUND_VARIABLE) AS ?case4) . } "xsd:string
http://purl.uniprot.org/unirules/MF_00213http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00213#construct
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